Clone GH11730 Report

Search the DGRC for GH11730

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:117
Well:30
Vector:pOT2
Associated Gene/TranscriptCG11404-RA
Protein status:GH11730.pep: gold
Preliminary Size:1015
Sequenced Size:843

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11404 2002-01-01 Sim4 clustering to Release 2
CG11404 2002-05-14 Blastp of sequenced clone
CG11404 2003-01-01 Sim4 clustering to Release 3
CG11404 2008-04-29 Release 5.5 accounting
CG11404 2008-08-15 Release 5.9 accounting
CG11404 2008-12-18 5.12 accounting

Clone Sequence Records

GH11730.complete Sequence

843 bp (843 high quality bases) assembled on 2002-05-14

GenBank Submission: AY118774

> GH11730.complete
TTTTTTACAGCCGCAACATGATTTTTATGCCTGCTCTAAACTTGCTTGTG
TACAACGTACTTGTAGGTTACATAAGCATGGAAATCAATCGAATCATAAA
TGTTTCTACAGCCCAGACAAGTCTTTGGCAGAATATTCCTATTATCGGCC
AGATGTTCGCTCCGTTACAACCGGAAACCAATTATGGAGTGGAGTTCGGG
GAAAGCATGTGGGACTTTAACCTATATGTAAACATCTTACTGCTTCTCCC
CGCATTTTTTCAGATCTATCACATCTCCTTGCTGGTGGCGATTGTTCTCA
TGTGGAACTGCTACCTTCACCAGTGTCTGGCTGCTTTCCACCTGAAGATG
GTGTGGCACTTGTGGTGGAGCGACCTATGCTGGAGCTACTACGCTTCTCT
TGTCCTTTTCGGATTCCTGTTGACCATGCTGCACTTTAGTCTGATTATAG
CAACCGTTATGTATCAGATGCAGATCGACGGAGATCCCAAACCTCGGATC
CAGTCCGAGGCTCTCCCAGAGCAGCAGCCACATCCCGCAGAGGAAATTCA
GGAACGAATGGCAATGGCCCAGACCATTAAGATCTAAAAAATCAGACACT
AAACGACGGAGCACAGGTTCAGCCGCCTTTAAGTGGGTCACCATCAGTCA
GGGGCTTAACCTTGCCGCATCTACAAATACACTGGGTCGGTGGTTCAACT
AATAAATATGCCAGAAAACACCAGACACACAGATACCCCGCACGCACACA
CCAGCACACTACCGCAGACCAGGACATGTACAAATGAATCGCAGCTGAGG
TATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GH11730.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:08:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG11404-RA 1110 CG11404-RA 123..922 1..800 4000 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:18:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 22537711..22538250 261..800 2700 100 Plus
chr3L 24539361 chr3L 22537499..22537660 102..263 810 100 Plus
chr3L 24539361 chr3L 22537351..22537452 1..102 510 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:45:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:18:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22548803..22549342 261..800 2700 100 Plus
3L 28110227 3L 22548591..22548752 102..263 810 100 Plus
3L 28110227 3L 22548443..22548544 1..102 510 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:39:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 22541903..22542442 261..800 2700 100 Plus
3L 28103327 3L 22541691..22541852 102..263 810 100 Plus
3L 28103327 3L 22541543..22541644 1..102 510 100 Plus
Blast to na_te.dros performed on 2019-03-16 06:18:03 has no hits.

GH11730.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:18:58 Download gff for GH11730.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 22537500..22537660 103..263 100 -> Plus
chr3L 22537351..22537452 1..102 100 -> Plus
chr3L 22537714..22538250 264..803 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:36:11 Download gff for GH11730.complete
Subject Subject Range Query Range Percent Splice Strand
CG11404-RA 1..570 18..587 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:52:22 Download gff for GH11730.complete
Subject Subject Range Query Range Percent Splice Strand
CG11404-RA 1..570 18..587 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:26:50 Download gff for GH11730.complete
Subject Subject Range Query Range Percent Splice Strand
CG11404-RA 1..570 18..587 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:45:01 Download gff for GH11730.complete
Subject Subject Range Query Range Percent Splice Strand
CG11404-RA 1..570 18..587 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:20:11 Download gff for GH11730.complete
Subject Subject Range Query Range Percent Splice Strand
CG11404-RA 1..570 18..587 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:30:31 Download gff for GH11730.complete
Subject Subject Range Query Range Percent Splice Strand
CG11404-RA 7..771 1..765 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:52:22 Download gff for GH11730.complete
Subject Subject Range Query Range Percent Splice Strand
CG11404-RA 7..771 1..765 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:26:50 Download gff for GH11730.complete
Subject Subject Range Query Range Percent Splice Strand
CG11404-RA 7..806 1..800 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:45:01 Download gff for GH11730.complete
Subject Subject Range Query Range Percent Splice Strand
CG11404-RA 7..771 1..765 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:20:11 Download gff for GH11730.complete
Subject Subject Range Query Range Percent Splice Strand
CG11404-RA 7..806 1..800 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:18:58 Download gff for GH11730.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22548592..22548752 103..263 100 -> Plus
3L 22548443..22548544 1..102 100 -> Plus
3L 22548806..22549342 264..803 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:18:58 Download gff for GH11730.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22548592..22548752 103..263 100 -> Plus
3L 22548443..22548544 1..102 100 -> Plus
3L 22548806..22549342 264..803 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:18:58 Download gff for GH11730.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22548592..22548752 103..263 100 -> Plus
3L 22548443..22548544 1..102 100 -> Plus
3L 22548806..22549342 264..803 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:26:50 Download gff for GH11730.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22541543..22541644 1..102 100 -> Plus
arm_3L 22541692..22541852 103..263 100 -> Plus
arm_3L 22541906..22542442 264..803 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:17:24 Download gff for GH11730.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22541906..22542442 264..803 99   Plus
3L 22541543..22541644 1..102 100 -> Plus
3L 22541692..22541852 103..263 100 -> Plus

GH11730.hyp Sequence

Translation from 2 to 586

> GH11730.hyp
FYSRNMIFMPALNLLVYNVLVGYISMEINRIINVSTAQTSLWQNIPIIGQ
MFAPLQPETNYGVEFGESMWDFNLYVNILLLLPAFFQIYHISLLVAIVLM
WNCYLHQCLAAFHLKMVWHLWWSDLCWSYYASLVLFGFLLTMLHFSLIIA
TVMYQMQIDGDPKPRIQSEALPEQQPHPAEEIQERMAMAQTIKI*

GH11730.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:24:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG11404-PA 189 CG11404-PA 1..189 6..194 1005 100 Plus
CG11404-PB 186 CG11404-PB 1..186 6..194 978 98.4 Plus

GH11730.pep Sequence

Translation from 17 to 586

> GH11730.pep
MIFMPALNLLVYNVLVGYISMEINRIINVSTAQTSLWQNIPIIGQMFAPL
QPETNYGVEFGESMWDFNLYVNILLLLPAFFQIYHISLLVAIVLMWNCYL
HQCLAAFHLKMVWHLWWSDLCWSYYASLVLFGFLLTMLHFSLIIATVMYQ
MQIDGDPKPRIQSEALPEQQPHPAEEIQERMAMAQTIKI*

GH11730.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:57:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10982-PA 177 GF10982-PA 5..170 15..189 179 32.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:57:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16261-PA 187 GG16261-PA 1..176 1..176 563 60.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:56:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG11404-PA 189 CG11404-PA 1..189 1..189 1005 100 Plus
CG11404-PB 186 CG11404-PB 1..186 1..189 978 98.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:57:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11387-PA 160 GI11387-PA 1..146 1..147 187 30.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:57:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22452-PA 194 GM22452-PA 6..194 1..189 890 87.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:57:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15033-PA 140 GD15033-PA 1..107 1..107 454 87.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:57:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11642-PA 185 GJ11642-PA 1..174 1..171 224 28.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:57:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23283-PA 186 GE23283-PA 1..175 1..176 614 63.6 Plus