Clone GH11740 Report

Search the DGRC for GH11740

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:117
Well:40
Vector:pOT2
Associated Gene/TranscriptCG17027-RA
Protein status:GH11740.pep: gold
Preliminary Size:941
Sequenced Size:1383

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17027 2001-01-01 Release 2 assignment
CG17027 2003-01-01 Sim4 clustering to Release 3
CG17027 2003-03-19 Blastp of sequenced clone
CG17027 2008-04-29 Release 5.5 accounting
CG17027 2008-08-15 Release 5.9 accounting
CG17027 2008-12-18 5.12 accounting

Clone Sequence Records

GH11740.complete Sequence

1383 bp (1383 high quality bases) assembled on 2003-03-19

GenBank Submission: AY069101

> GH11740.complete
CTCCGATTAGTTGACATCGCGAGCTGAGCAGCGACGGATCGTTTTTTGCC
CAAAGGAATACGCATAGAAGCAAGATGGCAGGAGTAAGTCAAGCTGATAT
CGAGGAGTTGTACAACTTTATCCATCCCCTGGCCATCAAAGCGGGCGAGA
TCCTCATGGAGGGCTACGAGATGGCCAGTAAAAACGTCTCAATCAAAGGC
GATTTCTACGACGTGGTCACCGACTACGACAACAAGATTGAGGACTTTCT
CATGGAGAAAATATTGGCCAGATACCCGGATCACAAGTTCATCGGCGAGG
AGGAGACGGCTAAGAACAACAACGTGTCCGGAGAGCTGACGAATGCTCCC
ACCTGGATCATAGATCCCATCGATGGAACTTCGAACTTTATCAAGCAGAT
TCCACACGTTTGCGTTTCAATCGGTTTGGCAATCAACAAACAAATCGTAG
TGGGAGTAATCAACAATCCTGTCCAGAAAAAGCTCTTCACAACGAAACTG
GGCCAAGGCGCCTTTTGCAATGGCAAACCAATCCACGTGAGCAGCTGCGA
GAGCGTTAAGGATGCCAATGTGGCCTACGAAGTGTCCCTGCTGCATGTCC
ATTCGGTGGCCAACAAGCATATCAAAAGGATCTACCATGTGGGATTGAAT
GCTAGACGACTTGTTGCCTACTCCTGTGTGGTGGATGAGCTGTGCATGGT
GGCCGCTGGCAATCTGGATGCCTTCTACATTGAGGACATGTATCCCTGGG
ATTGTGCCGCCGGCTCCCTGTTGGTTAAGGAGGCGGGAGGCGTGGTAACA
CATCCCTTTGGCGGACCATTCGACATAATGAAGCCGGATCTAATCTGCGC
CGGCACAGAGAAGTTGCGCAAGGAGATCGAAGACCTTCTGCGTAAGGGAG
ACCAGGAGGAGTCCGTGGGAGGGAAGCCGGTGCAGAAGTAATTTAGGCAA
GGCAACAACGATCTTAATTGAAAAGCTTGGGGTCAGCTGCACTGCCAATT
GGCGCTCGAAGCTCTGCTAATGGGGAGCTTTCGGATATATTCCAGCTTTA
ATCGCCGGCAGCTGTTCCACGATACACGTCAAAAAGGCGGGAAAGCCCGT
CAATCTTGAGACTTTGAAAAACAACACCGTATGATACCATAATTTTAAGC
ATTTAGCTGGCAAACAACTTAATATACAGATTACCTACTTGGAAATTTAG
TATTTCTATACTTATTCACAAAGTTTCACGAATTTCGTATTGTTTATACC
TTTTTCATATAGCATCCCTCAGAAAAATGTTAGTCTAACATGGAATTTAG
ATATTTATGTACCCATATCTGTATATAGAGTAAAGTAAATAAAGAAATTT
AAAGAAATCCTTAAAAAAAAAAAAAAAAAAAAA

GH11740.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:15:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG17027-RA 1775 CG17027-RA 412..1775 1..1364 6820 100 Plus
CG17026-RA 1215 CG17026-RA 391..606 332..547 510 82.4 Plus
CG17026-RA 1215 CG17026-RA 671..824 612..765 365 82.4 Plus
CG17026-RA 1215 CG17026-RA 275..363 216..304 205 82 Plus
CG17026-RA 1215 CG17026-RA 839..920 780..861 200 82.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:59:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 15970989..15971692 658..1362 3430 99.4 Plus
chr3L 24539361 chr3L 15970100..15970757 1..658 3290 100 Plus
chr3L 24539361 chr3L 15965410..15965850 216..656 735 77.8 Plus
chr3L 24539361 chr3L 15965928..15966112 677..861 355 79.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:45:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:59:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15981184..15981890 658..1364 3535 100 Plus
3L 28110227 3L 15980296..15980953 1..658 3290 100 Plus
3L 28110227 3L 15975599..15976039 216..656 735 77.8 Plus
3L 28110227 3L 15976117..15976301 677..861 355 79.5 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:56:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 15974284..15974990 658..1364 3535 100 Plus
3L 28103327 3L 15973396..15974053 1..658 3290 100 Plus
3L 28103327 3L 15968815..15969030 332..547 510 82.4 Plus
3L 28103327 3L 15969217..15969305 677..765 235 84.2 Plus
3L 28103327 3L 15968699..15968787 216..304 205 82 Plus
3L 28103327 3L 15969320..15969401 780..861 200 82.9 Plus
3L 28103327 3L 15969095..15969139 612..656 150 88.8 Plus
3L 28103327 3L 15970434..15970474 333..373 145 90.2 Plus
3L 28103327 3L 15971901..15971944 333..376 145 88.6 Plus
Blast to na_te.dros performed on 2019-03-15 23:59:47 has no hits.

GH11740.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:00:49 Download gff for GH11740.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 15970100..15970757 1..658 100 -> Plus
chr3L 15970990..15971692 659..1362 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:36:14 Download gff for GH11740.complete
Subject Subject Range Query Range Percent Splice Strand
CG17027-RA 1..867 75..941 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:46:21 Download gff for GH11740.complete
Subject Subject Range Query Range Percent Splice Strand
CG17027-RA 1..867 75..941 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:47:09 Download gff for GH11740.complete
Subject Subject Range Query Range Percent Splice Strand
CG17027-RA 1..867 75..941 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:37:47 Download gff for GH11740.complete
Subject Subject Range Query Range Percent Splice Strand
CG17027-RA 1..867 75..941 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:54:04 Download gff for GH11740.complete
Subject Subject Range Query Range Percent Splice Strand
CG17027-RA 1..867 75..941 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:57:46 Download gff for GH11740.complete
Subject Subject Range Query Range Percent Splice Strand
CG17027-RA 341..1702 1..1362 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:46:21 Download gff for GH11740.complete
Subject Subject Range Query Range Percent Splice Strand
CG17027-RA 1..1362 1..1362 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:47:09 Download gff for GH11740.complete
Subject Subject Range Query Range Percent Splice Strand
CG17027-RA 1..1362 1..1362 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:37:47 Download gff for GH11740.complete
Subject Subject Range Query Range Percent Splice Strand
CG17027-RA 341..1702 1..1362 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:54:04 Download gff for GH11740.complete
Subject Subject Range Query Range Percent Splice Strand
CG17027-RA 1..1362 1..1362 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:00:49 Download gff for GH11740.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15980296..15980953 1..658 100 -> Plus
3L 15981185..15981888 659..1362 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:00:49 Download gff for GH11740.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15980296..15980953 1..658 100 -> Plus
3L 15981185..15981888 659..1362 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:00:49 Download gff for GH11740.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15980296..15980953 1..658 100 -> Plus
3L 15981185..15981888 659..1362 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:47:09 Download gff for GH11740.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15973396..15974053 1..658 100 -> Plus
arm_3L 15974285..15974988 659..1362 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:07:59 Download gff for GH11740.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15973396..15974053 1..658 100 -> Plus
3L 15974285..15974988 659..1362 100   Plus

GH11740.pep Sequence

Translation from 74 to 940

> GH11740.pep
MAGVSQADIEELYNFIHPLAIKAGEILMEGYEMASKNVSIKGDFYDVVTD
YDNKIEDFLMEKILARYPDHKFIGEEETAKNNNVSGELTNAPTWIIDPID
GTSNFIKQIPHVCVSIGLAINKQIVVGVINNPVQKKLFTTKLGQGAFCNG
KPIHVSSCESVKDANVAYEVSLLHVHSVANKHIKRIYHVGLNARRLVAYS
CVVDELCMVAAGNLDAFYIEDMYPWDCAAGSLLVKEAGGVVTHPFGGPFD
IMKPDLICAGTEKLRKEIEDLLRKGDQEESVGGKPVQK*

GH11740.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:46:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24105-PA 288 GF24105-PA 1..288 1..288 1415 91 Plus
Dana\GF24102-PA 286 GF24102-PA 2..286 3..286 1192 76.5 Plus
Dana\GF24103-PA 284 GF24103-PA 5..277 4..277 736 48.5 Plus
Dana\GF24104-PA 284 GF24104-PA 5..277 4..277 608 41.6 Plus
Dana\GF10177-PA 277 GF10177-PA 6..263 8..268 442 36.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:46:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15939-PA 288 GG15939-PA 1..288 1..288 1496 97.6 Plus
Dere\GG15937-PA 284 GG15937-PA 5..283 6..283 1178 76.7 Plus
Dere\GG15938-PA 284 GG15938-PA 3..277 2..277 726 46.7 Plus
Dere\GG13252-PA 278 GG13252-PA 6..270 8..274 453 36.7 Plus
Dere\GG13251-PA 602 GG13251-PA 278..546 5..274 416 35 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:46:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14776-PA 290 GH14776-PA 3..286 7..283 1253 82 Plus
Dgri\GH14774-PA 289 GH14774-PA 7..281 9..282 1147 76.7 Plus
Dgri\GH14775-PA 286 GH14775-PA 7..279 4..277 714 46.7 Plus
Dgri\GH14777-PA 286 GH14777-PA 3..279 2..277 591 41.7 Plus
Dgri\GH16522-PA 278 GH16522-PA 6..270 8..274 446 38.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:41:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG17027-PB 288 CG17027-PB 1..288 1..288 1510 100 Plus
CG17027-PA 288 CG17027-PA 1..288 1..288 1510 100 Plus
CG17026-PA 284 CG17026-PA 4..284 5..284 1170 77.6 Plus
CG17029-PB 284 CG17029-PB 3..277 2..277 713 46.7 Plus
CG17029-PA 284 CG17029-PA 3..277 2..277 713 46.7 Plus
CG17028-PB 284 CG17028-PB 5..277 4..277 633 41.6 Plus
CG17028-PA 284 CG17028-PA 5..277 4..277 633 41.6 Plus
CG9391-PC 278 CG9391-PC 6..268 8..272 455 37.7 Plus
CG9391-PA 278 CG9391-PA 6..268 8..272 455 37.7 Plus
CG9389-PA 596 CG9389-PA 272..540 5..274 409 35.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:46:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11878-PA 282 GI11878-PA 3..279 7..283 1296 86.3 Plus
Dmoj\GI11876-PA 287 GI11876-PA 4..284 5..284 1157 74.4 Plus
Dmoj\GI11877-PA 283 GI11877-PA 1..276 1..277 703 45.8 Plus
Dmoj\GI11880-PA 284 GI11880-PA 7..277 6..277 605 43 Plus
Dmoj\GI12203-PA 278 GI12203-PA 6..270 8..274 467 37 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:46:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12746-PA 284 GL12746-PA 10..284 14..288 1336 89.8 Plus
Dper\GL12743-PA 287 GL12743-PA 2..283 3..283 1174 76.6 Plus
Dper\GL12744-PA 258 GL12744-PA 6..254 4..280 635 44.4 Plus
Dper\GL12745-PA 286 GL12745-PA 6..279 4..277 614 40 Plus
Dper\GL24596-PA 278 GL24596-PA 6..270 8..274 479 37.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:46:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14279-PA 292 GA14279-PA 6..292 2..288 1366 87.8 Plus
Dpse\GA14278-PA 287 GA14278-PA 2..283 3..283 1178 76.6 Plus
Dpse\GA14281-PA 285 GA14281-PA 6..281 4..280 727 47.7 Plus
Dpse\GA28212-PA 286 GA28212-PA 6..279 4..277 615 40.4 Plus
Dpse\GA23361-PA 278 GA23361-PA 6..270 8..274 489 38.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:46:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25570-PA 288 GM25570-PA 1..288 1..288 1483 96.5 Plus
Dsec\GM25567-PA 284 GM25567-PA 2..284 3..284 1179 76.3 Plus
Dsec\GM25568-PA 284 GM25568-PA 3..277 2..277 717 46 Plus
Dsec\GM25569-PA 284 GM25569-PA 5..277 4..277 654 42.7 Plus
Dsec\GM22155-PA 592 GM22155-PA 268..536 5..274 411 35.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:46:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14585-PA 288 GD14585-PA 1..288 1..288 1499 97.6 Plus
Dsim\GD14582-PA 284 GD14582-PA 2..284 3..284 1184 76.7 Plus
Dsim\GD14583-PA 284 GD14583-PA 3..277 2..277 717 46 Plus
Dsim\GD14584-PA 284 GD14584-PA 5..277 4..277 658 42.7 Plus
Dsim\GD12132-PA 278 GD12132-PA 6..270 8..274 429 38.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:46:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13574-PA 356 GJ13574-PA 2..269 6..273 1254 84.7 Plus
Dvir\GJ13572-PA 282 GJ13572-PA 3..279 9..284 1140 74.7 Plus
Dvir\GJ13573-PA 285 GJ13573-PA 6..278 4..277 699 46 Plus
Dvir\GJ11436-PA 278 GJ11436-PA 6..270 8..274 445 38.3 Plus
Dvir\GJ11435-PA 616 GJ11435-PA 306..549 8..252 438 37.7 Plus
Dvir\GJ13574-PA 356 GJ13574-PA 266..349 192..277 192 46.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:46:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24484-PA 290 GK24484-PA 4..286 5..287 1300 83.7 Plus
Dwil\GK24463-PA 284 GK24463-PA 7..283 9..283 1111 73.3 Plus
Dwil\GK24473-PA 281 GK24473-PA 3..274 5..277 690 46.5 Plus
Dwil\GK17369-PA 279 GK17369-PA 2..271 3..274 487 38.8 Plus
Dwil\GK20398-PA 704 GK20398-PA 329..588 8..268 423 36.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:46:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22878-PA 288 GE22878-PA 1..288 1..288 1492 97.2 Plus
Dyak\GE22874-PA 288 GE22874-PA 1..288 1..288 1486 96.9 Plus
Dyak\GE22871-PA 284 GE22871-PA 2..284 3..284 1202 77 Plus
Dyak\GE22875-PA 284 GE22875-PA 2..284 3..284 1199 77.4 Plus
Dyak\GE22872-PA 284 GE22872-PA 3..277 2..277 722 46.7 Plus

GH11740.hyp Sequence

Translation from 74 to 940

> GH11740.hyp
MAGVSQADIEELYNFIHPLAIKAGEILMEGYEMASKNVSIKGDFYDVVTD
YDNKIEDFLMEKILARYPDHKFIGEEETAKNNNVSGELTNAPTWIIDPID
GTSNFIKQIPHVCVSIGLAINKQIVVGVINNPVQKKLFTTKLGQGAFCNG
KPIHVSSCESVKDANVAYEVSLLHVHSVANKHIKRIYHVGLNARRLVAYS
CVVDELCMVAAGNLDAFYIEDMYPWDCAAGSLLVKEAGGVVTHPFGGPFD
IMKPDLICAGTEKLRKEIEDLLRKGDQEESVGGKPVQK*

GH11740.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:24:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG17027-PB 288 CG17027-PB 1..288 1..288 1510 100 Plus
CG17027-PA 288 CG17027-PA 1..288 1..288 1510 100 Plus
CG17026-PA 284 CG17026-PA 4..284 5..284 1170 77.6 Plus
CG17029-PB 284 CG17029-PB 3..277 2..277 713 46.7 Plus
CG17029-PA 284 CG17029-PA 3..277 2..277 713 46.7 Plus