Clone GH11784 Report

Search the DGRC for GH11784

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:117
Well:84
Vector:pOT2
Associated Gene/TranscriptCG7183-RA
Protein status:GH11784.pep: gold
Sequenced Size:2385

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7183 2003-01-01 Sim4 clustering to Release 3
CG7183 2004-08-13 Blastp of sequenced clone
CG7183 2008-04-29 Release 5.5 accounting
CG7183 2008-08-15 Release 5.9 accounting
CG7988 2008-08-15 Release 5.9 accounting
CG7183 2008-12-18 5.12 accounting
CG7988 2008-12-18 5.12 accounting

Clone Sequence Records

GH11784.complete Sequence

2385 bp (2385 high quality bases) assembled on 2004-08-13

GenBank Submission: BT016134

> GH11784.complete
GCTGAAATTTCTCCACATTCACATCCGGACAGTCGATTAGGTAATCGCTT
TCGGATTTATGGCGATCCCGCCGCCTCAGGCACTTACGAGCCATCCATTT
CTTGCGCGTTACCACCTGAAAATCCTCTCCAGAGTTCGACATTCCAAAAG
CATAATATTGTGGACAGTCCTAATGAATAATTAAAATTATAGAAAGTATC
TCGATTTGTTTTGTGCCAGTGTATTTATCAGCTGTTGCTTCTGCAACTTT
ATCTCACAGCTGTATTTTTGTAGTTATACTTTTGTACGCAATGAACGATC
CAAACAAGGCTATTAGTGTGAATCTTTCCTCGCTGCTCAGCCTGAAGGCG
GAATTGCTGCGGAAACAGCATGAGGTGAGGGTGGCCAAGGCCACAAAGGC
ATCCGCCGCCGACTTTCGCCCCACCAAGAGCGCCGGCAACAAGGAAAAGT
CCAGTGATCAGGGCTACAAAAAGGTCGCAAGCAGCGACGATGGTGCCAAA
GTGTACGAGGCCGAGGACCATGCTCAGTTGGAGAAGTCACGGCGCATCCT
GGAGGCCAAGAGTAAGTTCTACGACCGGATGAGCCGCAATGGAGGCAGCC
TCAACTCCGATGACAATTGCCTGGTGATGTTCAACCGCAAAAAACAGGAG
GCAGATCGGGAGCCGGAGCAGTGCACGCAGAGACGTGAGTCCCGCCAGCG
ACTGAGTAGCAGCAGCAGTTCCAGCCAAGATGAAGAAGGCCACGACGATT
TAGAGGTGGAGTACGTTGACTGCCTGGGACGCACCAGAAAGTGTTTGCGG
AAGGACTTGAAGGAGGCCAAGAGACGCGACAAGCAACTTGCCGAGAGCAT
GCCGGAGCGCCTAGATCAGACCAAGGCCAACTGGATGATAAATACCAAAG
GAAGCCGCGAGCTGAATAGTAACCACAACAGCGATGATGAGTCCTTCATT
GGGCCGCGTCCAACGGAGAGCGTCTTCAGCGAAGCCCTGTCCACGATGAC
GAAGCACGACGAACAGCGCATGAACTGGGAGCGCAAGGAGCAGGAGAATT
TTGAAAAGCCTGATGTCCACTACCAGGATGTCTTCTTTGACGAAGCGCGC
ACCCACGGTGTTGGCTACTATGCCTTCTCCACGGACGAAGACGAGCGCCG
ACAGCAGCAGTTGGATCTGGAAAAGGCACGCCAAGCAACGAAGGCTAAGC
AGATGCGACGAGATGAATTGCGCGCCCAACGAGACCGTCTCGTGGCGGAT
CGCGTGCTGGCCGCCAAAAACAGGATTCGAGAACGCAACGGCTTGCCACC
CATCAGCGAGGAAGACTACCTGCGGGAGGAACAGCAAAAGAAGGACGAAT
TGGCGAAAGAAGAAGCAGAGCTAAATCGGGCGGAACAAGAGAGGAGGGCA
GCCATCGAGCGTAAAAAAGAAAAGGAGGAGGCTGAACTGGAAGAATTGCG
CAAGGAGCACGTACGCGATTGGGACAAGAACAAACCTGGTGTGCGCAAGC
TAGCAGACTCGGAGAGCGCAGAACCACCTGAGGAGGAGTGGAAGTACAAG
GCCGAACGCCTGCCAATGTCCCAGGAGGAGTGGAATGAGAAGCAGCGTGC
CCAGCGGCATGCAGAATTTGCGCCCATGCCAGAGCCTGTCCCCCTTAAGC
GCAGTAACTTCAGCAGCATGCCACCGCCTATGGTGTGGAACCGTGCCCAA
GAGCCGCAGTTCCACAATTTTCACAGCACAAAGGAGGAAAAGAAGTTCCA
ACGACGGAGCTACAGTGCGAATAACGAAGACGAAGCTGATGAACAACCGA
GCACATCCAGTCGTGGCATGGGTGCCGCTATTCCTCCGCCTGCTGGATTG
GATGACAGAGCTCCACCAGCGAAAAAGCCCAAGTCTCAGGATGACCTGGA
GCGCTCCATCGAAGCGGGTCTTAGATTTCTGCGTGAGAACTGCGACAAGG
GCGTCCTGGGAAACAAGGCCACCTGGACGGCCAAGGCGGATTACTGAGTT
AAGGAAAGGCATACCCTTCATTTATAGTTTATTACTTTGTGTAAAGAATA
CTTTAGAAAAACACAATACGACTAGACAAGCTTTCTATTGTCTGTTTTTT
TTTCGGCCTAAGTTCAACAAATGTATTGTTAATTTTAGCTACGGCTAGAG
CGAATAGTGCTTTCTCACAATTCCTGTCCAATTTAAAAGCCCTGTGCCCA
ATTGCATTCCGTCTAGGTAAACGCAATGGAAACTTAAATTTTCCGAGAAT
ACCCACTTGGTATCATGAGTTAAGCGAAAGACTAAACAAAAAACATATAT
TATTTACTATTTTTGCAACGTTCTGTTTGCTCATCTAGCAGTACAAATAA
AAAACTAATATGAGAATAAAAAAAAAAAAAAAAAA

GH11784.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:58:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG7183-RA 2386 CG7183-RA 1..2370 1..2370 11850 100 Plus
CG7988-RA 891 CG7988-RA 25..174 150..1 750 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:43:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 14042441..14044659 2367..149 11095 100 Minus
chr3R 27901430 chr3R 14044844..14044993 150..1 750 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:45:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18218144..18220365 2370..149 11110 100 Minus
3R 32079331 3R 18220550..18220699 150..1 750 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:47:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 17958975..17961196 2370..149 11110 100 Minus
3R 31820162 3R 17961381..17961530 150..1 750 100 Minus
Blast to na_te.dros performed 2019-03-16 07:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
S-element 1736 S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). 1492..1635 2027..2175 120 56.4 Plus

GH11784.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:44:19 Download gff for GH11784.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 14042441..14044657 151..2367 100 <- Minus
chr3R 14044844..14044993 1..150 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:36:17 Download gff for GH11784.complete
Subject Subject Range Query Range Percent Splice Strand
CG7183-RA 1..1707 291..1997 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:32:35 Download gff for GH11784.complete
Subject Subject Range Query Range Percent Splice Strand
CG7183-RA 1..1707 291..1997 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:34:22 Download gff for GH11784.complete
Subject Subject Range Query Range Percent Splice Strand
CG7183-RA 1..1707 291..1997 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:16:27 Download gff for GH11784.complete
Subject Subject Range Query Range Percent Splice Strand
CG7183-RA 1..1707 291..1997 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:40:32 Download gff for GH11784.complete
Subject Subject Range Query Range Percent Splice Strand
CG7183-RA 1..1707 291..1997 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:37:51 Download gff for GH11784.complete
Subject Subject Range Query Range Percent Splice Strand
CG7183-RA 1..2367 1..2367 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:32:35 Download gff for GH11784.complete
Subject Subject Range Query Range Percent Splice Strand
CG7183-RA 1..2367 1..2367 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:34:22 Download gff for GH11784.complete
Subject Subject Range Query Range Percent Splice Strand
CG7183-RA 1..2367 1..2367 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:16:27 Download gff for GH11784.complete
Subject Subject Range Query Range Percent Splice Strand
CG7183-RA 1..2367 1..2367 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:40:32 Download gff for GH11784.complete
Subject Subject Range Query Range Percent Splice Strand
CG7183-RA 1..2367 1..2367 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:44:19 Download gff for GH11784.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18218147..18220363 151..2367 100 <- Minus
3R 18220550..18220699 1..150 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:44:19 Download gff for GH11784.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18218147..18220363 151..2367 100 <- Minus
3R 18220550..18220699 1..150 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:44:19 Download gff for GH11784.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18218147..18220363 151..2367 100 <- Minus
3R 18220550..18220699 1..150 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:34:22 Download gff for GH11784.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14043869..14046085 151..2367 100 <- Minus
arm_3R 14046272..14046421 1..150 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:53:25 Download gff for GH11784.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17958978..17961194 151..2367 100 <- Minus
3R 17961381..17961530 1..150 100   Minus

GH11784.hyp Sequence

Translation from 290 to 1996

> GH11784.hyp
MNDPNKAISVNLSSLLSLKAELLRKQHEVRVAKATKASAADFRPTKSAGN
KEKSSDQGYKKVASSDDGAKVYEAEDHAQLEKSRRILEAKSKFYDRMSRN
GGSLNSDDNCLVMFNRKKQEADREPEQCTQRRESRQRLSSSSSSSQDEEG
HDDLEVEYVDCLGRTRKCLRKDLKEAKRRDKQLAESMPERLDQTKANWMI
NTKGSRELNSNHNSDDESFIGPRPTESVFSEALSTMTKHDEQRMNWERKE
QENFEKPDVHYQDVFFDEARTHGVGYYAFSTDEDERRQQQLDLEKARQAT
KAKQMRRDELRAQRDRLVADRVLAAKNRIRERNGLPPISEEDYLREEQQK
KDELAKEEAELNRAEQERRAAIERKKEKEEAELEELRKEHVRDWDKNKPG
VRKLADSESAEPPEEEWKYKAERLPMSQEEWNEKQRAQRHAEFAPMPEPV
PLKRSNFSSMPPPMVWNRAQEPQFHNFHSTKEEKKFQRRSYSANNEDEAD
EQPSTSSRGMGAAIPPPAGLDDRAPPAKKPKSQDDLERSIEAGLRFLREN
CDKGVLGNKATWTAKADY*

GH11784.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:24:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG7183-PB 568 CG7183-PB 1..568 1..568 2952 100 Plus
CG7183-PA 568 CG7183-PA 1..568 1..568 2952 100 Plus
CG2839-PA 826 CG2839-PA 273..747 21..502 208 21 Plus
CG2839-PA 826 CG2839-PA 313..721 19..438 201 20.8 Plus
CG2839-PA 826 CG2839-PA 355..738 19..422 182 21.5 Plus
rgn-PD 800 CG6014-PD 432..796 46..452 162 23 Plus
rgn-PA 800 CG6014-PA 432..796 46..452 162 23 Plus

GH11784.pep Sequence

Translation from 290 to 1996

> GH11784.pep
MNDPNKAISVNLSSLLSLKAELLRKQHEVRVAKATKASAADFRPTKSAGN
KEKSSDQGYKKVASSDDGAKVYEAEDHAQLEKSRRILEAKSKFYDRMSRN
GGSLNSDDNCLVMFNRKKQEADREPEQCTQRRESRQRLSSSSSSSQDEEG
HDDLEVEYVDCLGRTRKCLRKDLKEAKRRDKQLAESMPERLDQTKANWMI
NTKGSRELNSNHNSDDESFIGPRPTESVFSEALSTMTKHDEQRMNWERKE
QENFEKPDVHYQDVFFDEARTHGVGYYAFSTDEDERRQQQLDLEKARQAT
KAKQMRRDELRAQRDRLVADRVLAAKNRIRERNGLPPISEEDYLREEQQK
KDELAKEEAELNRAEQERRAAIERKKEKEEAELEELRKEHVRDWDKNKPG
VRKLADSESAEPPEEEWKYKAERLPMSQEEWNEKQRAQRHAEFAPMPEPV
PLKRSNFSSMPPPMVWNRAQEPQFHNFHSTKEEKKFQRRSYSANNEDEAD
EQPSTSSRGMGAAIPPPAGLDDRAPPAKKPKSQDDLERSIEAGLRFLREN
CDKGVLGNKATWTAKADY*

GH11784.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:09:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16501-PA 558 GF16501-PA 1..558 1..568 1805 70 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:09:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16652-PA 574 GG16652-PA 1..574 1..568 2336 85 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:09:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17293-PA 586 GH17293-PA 1..586 1..568 1766 66.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:23:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG7183-PB 568 CG7183-PB 1..568 1..568 2952 100 Plus
CG7183-PA 568 CG7183-PA 1..568 1..568 2952 100 Plus
CG2839-PA 826 CG2839-PA 273..747 21..502 208 21 Plus
CG2839-PA 826 CG2839-PA 313..721 19..438 201 20.8 Plus
CG2839-PA 826 CG2839-PA 355..738 19..422 182 21.5 Plus
rgn-PD 800 CG6014-PD 432..796 46..452 162 23 Plus
rgn-PA 800 CG6014-PA 432..796 46..452 162 23 Plus
rgn-PC 808 CG6014-PC 440..804 46..452 162 23 Plus
rgn-PB 808 CG6014-PB 440..804 46..452 162 23 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:09:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23873-PA 584 GI23873-PA 1..584 1..568 1691 63 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:09:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12009-PA 557 GL12009-PA 1..557 1..568 1632 66.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:09:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20163-PA 557 GA20163-PA 1..557 1..568 1628 66 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:09:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15318-PA 569 GM15318-PA 1..569 1..568 2552 93.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:09:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20196-PA 555 GD20196-PA 1..555 1..568 2370 91 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:09:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23964-PA 587 GJ23964-PA 1..587 1..568 1730 66.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:09:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11827-PA 567 GK11827-PA 1..567 1..568 1657 62.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:09:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25229-PA 574 GE25229-PA 1..574 1..568 2204 84.7 Plus