Clone GH11824 Report

Search the DGRC for GH11824

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:118
Well:24
Vector:pOT2
Associated Gene/TranscriptCG12162-RA
Protein status:GH11824.pep: gold
Preliminary Size:1604
Sequenced Size:1570

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12162 2001-01-01 Release 2 assignment
CG12162 2001-11-08 Blastp of sequenced clone
CG12162 2003-01-01 Sim4 clustering to Release 3
CG12162 2008-04-29 Release 5.5 accounting
CG12162 2008-08-15 Release 5.9 accounting
CG12162 2008-12-18 5.12 accounting

Clone Sequence Records

GH11824.complete Sequence

1570 bp (1570 high quality bases) assembled on 2001-11-08

GenBank Submission: AY069102

> GH11824.complete
CAACATCAAAATGTTCATAACAATGTTGGGATTTTAGAGACAGCCACAAA
ATTTAGAAGCACATGTGCCCTGCTAGATCGAACCGAACCTGAGAACTGAT
CGCCGAAAGAAGCTGCAGATTGTTGCATAAACCGCGCGCGCAGCTACCGC
TCCGAACTCGAAAAGGTGCTCCACGGGTCTCCGAGCTTTCCGAACTTTGG
ATGCGCCGCGATGAGCTTGTTGGTGCAAGTGTTCAAGTGGGACCAGCGAT
GTCCCATGCTCCACAGGGTGGACATCCTGCTGCGGCGTGGCGTCAAGAAG
CAGGCGGTGTATCCGACCAAACTGGCTGAGGTGGGTCGCCTGGTGGATGC
CCGCGACGACCGGTACGAGACGGGCCAACTATTCCTGCACCGCATCTTCG
GCTACCGCGGCGTTATACTCTTCCCCTGGACAGCCCGCGTCTACGACCGG
GATCTGCACAATCCTGGCAAGATTAGCGCCACCACGACTACGAGCGCCAA
TCCGACGCAGCAGAACCGCACCAAAGAGGCTTCGCTCCGCGTGAAGGCCA
ACACCTCCGCTTCCCCAACGGCTGCTACCGCTCAGAGCGCCGATGCCCCC
ACCTCGACCGCCTTTGAGACGAACGCGGCTGAAAGTACAGGCACCACAAA
CCTGGGTACCACCTCCCAAGTGGATCCCAAAGAGGTCAAGGGCAAGGTGC
AAACCTTTTATCAGGTGCTCATAGACACCCGCGATTGCCCGTACATTCGC
GCCCAGACCGAGGCGGTCACCTTTCTCGGCAACCAGGACTCCAACCGCAG
CCTCTACGCCATCCCCGGGCTGGACTACGTGGCCCACGAGGACATCATGC
CTTACAGCTCCAGCGAGAAGAGTCCGCTGCAGCACGAGCTGTTCGATAAG
TTCCTTACGCACGCTCCGGACGCGGACCCGCCATTTGTGGGCCAGGACAC
TCTGAAGGCGTGGCAGGAGAAGAACCATCCCTGGCTGGACATGAGCGATG
TACACAAGGAGACCACGGAGAACGTGCGCATTACCGTGATTCCCTTCTAC
ATGGGTTGCCGGGAGACGCCTGCTAGTTCGGTCTACTGGTGGCGCTACTG
CATCCGACTGGAGAACCTCGGCGAGCTGAGCGTGCAGCTGCGCGAGCGCC
ACTGGCGCATTTTCTCACTGTCTGGAACCCTGGAGACGGTGCGCGGAAGA
GGAGTGGTGGGCCAGGAGCCCATTCTGAGCCCCCGGCTGCCCGCCTTTCA
GTACAGCAGCCATGTGAGCCTGCAGGCTCCCAGCGGCCATATGTGGGGCA
CCTTCCGGCTGGAGCGCGAAGACGGATACTCCTTCGATTGCAAGATTCCG
CCCTTCTCACTGGAGAGCAAGCCGGACGACCTAGGGACGCCCACACCGGC
CACGCCCAGTGCCCACGATAAAAAGCGCGACGATAGCGATTAAGAGGCAG
TTGTTCACCCGTAGTTAAATGATTTTAAAACGCAATCTTTTCTGACAATG
CATGCGTACATGTGTTTAGTGCAAATTACAATAATCAACAAGGAAAAAAA
AAAAAAAAAAAAAAAAAAAA

GH11824.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:01:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12162-RA 1714 CG12162-RA 91..1634 1..1544 7720 100 Plus
CG12162-RB 1744 CG12162-RB 441..1664 321..1544 6120 100 Plus
CG12162-RB 1744 CG12162-RB 68..387 1..320 1600 100 Plus
mRpL44-RA 1181 mRpL44-RA 1103..1181 1544..1466 395 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:08:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1294744..1295198 1089..1543 2275 100 Plus
chr3R 27901430 chr3R 1293862..1294288 321..747 2135 100 Plus
chr3R 27901430 chr3R 1294348..1294689 748..1089 1710 100 Plus
chr3R 27901430 chr3R 1293489..1293808 1..320 1600 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:45:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5469085..5469540 1089..1544 2280 100 Plus
3R 32079331 3R 5468203..5468629 321..747 2135 100 Plus
3R 32079331 3R 5468689..5469030 748..1089 1710 100 Plus
3R 32079331 3R 5467830..5468149 1..320 1600 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:26:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 5209916..5210371 1089..1544 2280 100 Plus
3R 31820162 3R 5209034..5209460 321..747 2135 100 Plus
3R 31820162 3R 5209520..5209861 748..1089 1710 100 Plus
3R 31820162 3R 5208661..5208980 1..320 1600 100 Plus
Blast to na_te.dros performed on 2019-03-15 19:08:55 has no hits.

GH11824.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:09:35 Download gff for GH11824.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1293489..1293808 1..320 100 -> Plus
chr3R 1293862..1294288 321..747 100 -> Plus
chr3R 1294348..1294689 748..1089 100 -> Plus
chr3R 1294745..1295198 1090..1543 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:36:19 Download gff for GH11824.complete
Subject Subject Range Query Range Percent Splice Strand
CG12162-RA 1..1233 211..1443 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:34:57 Download gff for GH11824.complete
Subject Subject Range Query Range Percent Splice Strand
CG12162-RA 1..1233 211..1443 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:43:42 Download gff for GH11824.complete
Subject Subject Range Query Range Percent Splice Strand
CG12162-RA 1..1233 211..1443 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:02:31 Download gff for GH11824.complete
Subject Subject Range Query Range Percent Splice Strand
CG12162-RA 1..1233 211..1443 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:11:43 Download gff for GH11824.complete
Subject Subject Range Query Range Percent Splice Strand
CG12162-RA 1..1233 211..1443 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:14:43 Download gff for GH11824.complete
Subject Subject Range Query Range Percent Splice Strand
CG12162-RA 38..1580 1..1543 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:34:57 Download gff for GH11824.complete
Subject Subject Range Query Range Percent Splice Strand
CG12162-RA 38..1580 1..1543 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:43:42 Download gff for GH11824.complete
Subject Subject Range Query Range Percent Splice Strand
CG12162-RA 53..1595 1..1543 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:02:31 Download gff for GH11824.complete
Subject Subject Range Query Range Percent Splice Strand
CG12162-RA 38..1580 1..1543 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:11:43 Download gff for GH11824.complete
Subject Subject Range Query Range Percent Splice Strand
CG12162-RA 53..1595 1..1543 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:09:35 Download gff for GH11824.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5467830..5468149 1..320 100 -> Plus
3R 5468203..5468629 321..747 100 -> Plus
3R 5468689..5469030 748..1089 100 -> Plus
3R 5469086..5469539 1090..1543 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:09:35 Download gff for GH11824.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5467830..5468149 1..320 100 -> Plus
3R 5468203..5468629 321..747 100 -> Plus
3R 5468689..5469030 748..1089 100 -> Plus
3R 5469086..5469539 1090..1543 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:09:35 Download gff for GH11824.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5467830..5468149 1..320 100 -> Plus
3R 5468203..5468629 321..747 100 -> Plus
3R 5468689..5469030 748..1089 100 -> Plus
3R 5469086..5469539 1090..1543 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:43:42 Download gff for GH11824.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1293552..1293871 1..320 100 -> Plus
arm_3R 1293925..1294351 321..747 100 -> Plus
arm_3R 1294411..1294752 748..1089 100 -> Plus
arm_3R 1294808..1295261 1090..1543 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:39:34 Download gff for GH11824.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5208661..5208980 1..320 100 -> Plus
3R 5209034..5209460 321..747 100 -> Plus
3R 5209520..5209861 748..1089 100 -> Plus
3R 5209917..5210370 1090..1543 100   Plus

GH11824.pep Sequence

Translation from 210 to 1442

> GH11824.pep
MSLLVQVFKWDQRCPMLHRVDILLRRGVKKQAVYPTKLAEVGRLVDARDD
RYETGQLFLHRIFGYRGVILFPWTARVYDRDLHNPGKISATTTTSANPTQ
QNRTKEASLRVKANTSASPTAATAQSADAPTSTAFETNAAESTGTTNLGT
TSQVDPKEVKGKVQTFYQVLIDTRDCPYIRAQTEAVTFLGNQDSNRSLYA
IPGLDYVAHEDIMPYSSSEKSPLQHELFDKFLTHAPDADPPFVGQDTLKA
WQEKNHPWLDMSDVHKETTENVRITVIPFYMGCRETPASSVYWWRYCIRL
ENLGELSVQLRERHWRIFSLSGTLETVRGRGVVGQEPILSPRLPAFQYSS
HVSLQAPSGHMWGTFRLEREDGYSFDCKIPPFSLESKPDDLGTPTPATPS
AHDKKRDDSD*

GH11824.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:30:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17253-PA 409 GF17253-PA 1..409 1..410 1802 82 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:30:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12826-PA 408 GG12826-PA 1..408 1..410 2041 94.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:30:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18595-PA 415 GH18595-PA 1..406 1..397 1657 76.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:25
Subject Length Description Subject Range Query Range Score Percent Strand
POLDIP2-PA 410 CG12162-PA 1..410 1..410 2180 100 Plus
POLDIP2-PB 431 CG12162-PB 58..431 37..410 1987 99.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23078-PA 417 GI23078-PA 1..415 1..403 1617 75.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21664-PA 423 GL21664-PA 1..423 1..410 1732 78.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11446-PA 423 GA11446-PA 1..423 1..410 1733 78.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10809-PA 410 GM10809-PA 1..410 1..410 2163 97.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19787-PA 410 GD19787-PA 1..410 1..410 2155 96.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:30:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22698-PA 413 GJ22698-PA 1..411 1..403 1672 77.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:30:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11224-PA 416 GK11224-PA 2..416 1..410 1719 75.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:30:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25469-PA 408 GE25469-PA 1..408 1..410 2005 93.4 Plus

GH11824.hyp Sequence

Translation from 210 to 1442

> GH11824.hyp
MSLLVQVFKWDQRCPMLHRVDILLRRGVKKQAVYPTKLAEVGRLVDARDD
RYETGQLFLHRIFGYRGVILFPWTARVYDRDLHNPGKISATTTTSANPTQ
QNRTKEASLRVKANTSASPTAATAQSADAPTSTAFETNAAESTGTTNLGT
TSQVDPKEVKGKVQTFYQVLIDTRDCPYIRAQTEAVTFLGNQDSNRSLYA
IPGLDYVAHEDIMPYSSSEKSPLQHELFDKFLTHAPDADPPFVGQDTLKA
WQEKNHPWLDMSDVHKETTENVRITVIPFYMGCRETPASSVYWWRYCIRL
ENLGELSVQLRERHWRIFSLSGTLETVRGRGVVGQEPILSPRLPAFQYSS
HVSLQAPSGHMWGTFRLEREDGYSFDCKIPPFSLESKPDDLGTPTPATPS
AHDKKRDDSD*

GH11824.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:24:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG12162-PA 410 CG12162-PA 1..410 1..410 2180 100 Plus
CG12162-PB 431 CG12162-PB 58..431 37..410 1987 99.7 Plus