Clone GH11867 Report

Search the DGRC for GH11867

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:118
Well:67
Vector:pOT2
Associated Gene/TranscriptCG31344-RA
Protein status:GH11867.pep: gold
Preliminary Size:1511
Sequenced Size:1510

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6572 2001-01-01 Release 2 assignment
CG31344 2001-09-19 Blastp of sequenced clone
CG31344 2003-01-01 Sim4 clustering to Release 3
CG31344 2008-04-29 Release 5.5 accounting
CG31344 2008-08-15 Release 5.9 accounting
CG31344 2008-12-18 5.12 accounting

Clone Sequence Records

GH11867.complete Sequence

1510 bp (1510 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058343

> GH11867.complete
AATGATTCGAAACCAGTTTACGCGCCAATGACCGGCTTTCCATTCTTATT
TGACGAGCCTAACGTGCCAGTTGCAGTTAAGTTCCCCAACCGCAACGACG
GTGGGCAGCCGTGATTCATCCTCAACGCTTTTTTTCCAATTGTGTATGCA
AAATGTTTTTGCACGTAACGAGCTGAACTATTGAGTTTGCTAAATAGTTT
AACAAGCAATAATTTGGCCGACATGCAGGTTGATGGTTGTACCAGCAGCT
CATCCGAGATCCCCCATCCCGCGAAGCGTGAAACGTGGATCAGTGGGAAA
ATGCAGTCGTCATCGCATTCCAAAGATGGTCATAATGCAGCGGGGGCTTC
AAAACTGCTTCAGGATCACCAGGAGCCCGAGGACTACTTGGAGCACCTAA
TGAAGGAGGGCAGTCAGGAGGGCGACAGCGGTGCTGATTTGGAGCTACCT
TCGTGGTACGATGAGCAGCTATTCAGGCGTGGTCAGAGCTACTTTAGCAC
GTATCGCTTTGTAATGAACGCCGGAATGCTGGCTGGTCTTATTGCCGTGC
TGGCTATTCCATCCATTCTCCGGGTGCTGTCGTGCACACGCCAATCCTCG
ACAGCGTTCACCGCCTACCGTCGCTATGTGCGTACTATATTCCACACGCA
AGCCTGGTATAACCACAACATCGCGGACCGTGGCAGCAGGTTCTGGACCA
GCATTGCGGCCGTGAGGCGGGCCCACAGCCGCTCCAGTCATGCGTGCGCC
CGCCAAGGAGCTGGACAGATCACCCAGAAGGATTTGGCGCTCACGCAGTT
CGGTTTCATTGGCTTCATAACGATGGGCGCACATCGCATAAAGCTGAAAG
ATCAGGACTTCCTGGAGGCCACTACGCATATGTGGCGCGTTCTCGGCTAT
CTGCTGGGCATCAAGGATGAGTACAACATCTGCGGTAGGAACTGGGCGGA
GTCAAAGCTCCGCCTGGACATTGTGATGCGTAAGGTATACGAACCAGCTC
TGGCAAACACTGGGGAGGATTTCAAACGAATGACCGAGGCCCTGATTAAT
GGCTTGTGGCACATAAACACCATGCTGTCGGTGAATGCCAACATATTCTT
TGCCAAGCGATTGGCCTGCGTTAAGGGATACGAGTACTACAGTTTCGATC
ATGAGAACGGAGTGGCGCAGGATCCCCAGCAGAAGCTGCACTACTACGAC
ATGGGATGGTGGGACCGATTCATAGTCAGCTACGGCCTGTTCCTCGTCAC
ATATCTGCACAGGTATGCCCTGGTGCGATGGTACTTGAACTTCCGCGTCT
GGCTGGTGGACATATTCACCTATTACTTGCCCTACGTCGCCATTTGGAAG
TTTGGCCCGAAGTCCGCGTATGTGCGGATTTTCAGGAATGGCGGGGAAGC
CCAAGACTTTGCCCTGGGCTTGAAGGACGATTAGATAGTGTTGTGTTTCA
GTAGGTAAATTATCAATAAATATGCAAAGTAATTGTTGTAAAAAAAAAAA
AAAAAAAAAA

GH11867.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:23:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG31344-RA 1582 CG31344-RA 56..1548 1..1493 7465 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:22:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 11048008..11049018 1489..479 5040 99.9 Minus
chr3R 27901430 chr3R 11049712..11049998 287..1 1405 99.3 Minus
chr3R 27901430 chr3R 11049372..11049564 479..287 950 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:45:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:22:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15223374..15224388 1493..479 5075 100 Minus
3R 32079331 3R 15225082..15225368 287..1 1435 100 Minus
3R 32079331 3R 15224742..15224934 479..287 965 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:46:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 14964205..14965219 1493..479 5075 100 Minus
3R 31820162 3R 14965913..14966199 287..1 1435 100 Minus
3R 31820162 3R 14965573..14965765 479..287 965 100 Minus
Blast to na_te.dros performed on 2019-03-15 15:22:12 has no hits.

GH11867.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:23:08 Download gff for GH11867.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 11048008..11049017 480..1489 99 <- Minus
chr3R 11049372..11049564 287..479 99 <- Minus
chr3R 11049713..11049998 1..286 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:36:27 Download gff for GH11867.complete
Subject Subject Range Query Range Percent Splice Strand
CG31344-RA 1..1212 223..1434 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:08:17 Download gff for GH11867.complete
Subject Subject Range Query Range Percent Splice Strand
CG31344-RA 1..1212 223..1434 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:26:03 Download gff for GH11867.complete
Subject Subject Range Query Range Percent Splice Strand
CG31344-RA 1..1212 223..1434 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:38:59 Download gff for GH11867.complete
Subject Subject Range Query Range Percent Splice Strand
CG31344-RA 1..1212 223..1434 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:04:04 Download gff for GH11867.complete
Subject Subject Range Query Range Percent Splice Strand
CG31344-RA 1..1212 223..1434 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:58:35 Download gff for GH11867.complete
Subject Subject Range Query Range Percent Splice Strand
CG31344-RA 55..1543 1..1489 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:08:17 Download gff for GH11867.complete
Subject Subject Range Query Range Percent Splice Strand
CG31344-RA 55..1543 1..1489 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:26:03 Download gff for GH11867.complete
Subject Subject Range Query Range Percent Splice Strand
CG31344-RA 1..1450 40..1489 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:38:59 Download gff for GH11867.complete
Subject Subject Range Query Range Percent Splice Strand
CG31344-RA 55..1543 1..1489 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:04:04 Download gff for GH11867.complete
Subject Subject Range Query Range Percent Splice Strand
CG31344-RA 1..1450 40..1489 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:23:08 Download gff for GH11867.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15225083..15225368 1..286 100   Minus
3R 15223378..15224387 480..1489 100 <- Minus
3R 15224742..15224934 287..479 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:23:08 Download gff for GH11867.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15225083..15225368 1..286 100   Minus
3R 15223378..15224387 480..1489 100 <- Minus
3R 15224742..15224934 287..479 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:23:08 Download gff for GH11867.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15225083..15225368 1..286 100   Minus
3R 15223378..15224387 480..1489 100 <- Minus
3R 15224742..15224934 287..479 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:26:03 Download gff for GH11867.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11050805..11051090 1..286 100   Minus
arm_3R 11049100..11050109 480..1489 100 <- Minus
arm_3R 11050464..11050656 287..479 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:16:29 Download gff for GH11867.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14964209..14965218 480..1489 100 <- Minus
3R 14965573..14965765 287..479 100 <- Minus
3R 14965914..14966199 1..286 100   Minus

GH11867.hyp Sequence

Translation from 222 to 1433

> GH11867.hyp
MQVDGCTSSSSEIPHPAKRETWISGKMQSSSHSKDGHNAAGASKLLQDHQ
EPEDYLEHLMKEGSQEGDSGADLELPSWYDEQLFRRGQSYFSTYRFVMNA
GMLAGLIAVLAIPSILRVLSCTRQSSTAFTAYRRYVRTIFHTQAWYNHNI
ADRGSRFWTSIAAVRRAHSRSSHACARQGAGQITQKDLALTQFGFIGFIT
MGAHRIKLKDQDFLEATTHMWRVLGYLLGIKDEYNICGRNWAESKLRLDI
VMRKVYEPALANTGEDFKRMTEALINGLWHINTMLSVNANIFFAKRLACV
KGYEYYSFDHENGVAQDPQQKLHYYDMGWWDRFIVSYGLFLVTYLHRYAL
VRWYLNFRVWLVDIFTYYLPYVAIWKFGPKSAYVRIFRNGGEAQDFALGL
KDD*

GH11867.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:26:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG31344-PA 403 CG31344-PA 1..403 1..403 2161 100 Plus

GH11867.pep Sequence

Translation from 222 to 1433

> GH11867.pep
MQVDGCTSSSSEIPHPAKRETWISGKMQSSSHSKDGHNAAGASKLLQDHQ
EPEDYLEHLMKEGSQEGDSGADLELPSWYDEQLFRRGQSYFSTYRFVMNA
GMLAGLIAVLAIPSILRVLSCTRQSSTAFTAYRRYVRTIFHTQAWYNHNI
ADRGSRFWTSIAAVRRAHSRSSHACARQGAGQITQKDLALTQFGFIGFIT
MGAHRIKLKDQDFLEATTHMWRVLGYLLGIKDEYNICGRNWAESKLRLDI
VMRKVYEPALANTGEDFKRMTEALINGLWHINTMLSVNANIFFAKRLACV
KGYEYYSFDHENGVAQDPQQKLHYYDMGWWDRFIVSYGLFLVTYLHRYAL
VRWYLNFRVWLVDIFTYYLPYVAIWKFGPKSAYVRIFRNGGEAQDFALGL
KDD*

GH11867.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:28:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11813-PA 376 GF11813-PA 4..376 33..403 1691 81.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:28:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20803-PA 403 GG20803-PA 1..403 1..403 2031 92.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:28:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18754-PA 368 GH18754-PA 13..368 48..403 1453 74.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG31344-PA 403 CG31344-PA 1..403 1..403 2161 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:28:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22644-PA 360 GI22644-PA 7..360 50..403 1453 75.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:28:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12078-PA 386 GL12078-PA 2..386 3..403 1666 76.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:28:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16195-PB 386 GA16195-PB 2..386 3..403 1671 76.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:28:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25796-PA 403 GM25796-PA 1..403 1..403 2085 95.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:28:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20373-PA 403 GD20373-PA 1..403 1..403 2084 94.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:28:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23372-PA 466 GJ23372-PA 150..466 87..403 1348 77.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:28:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12782-PA 374 GK12782-PA 17..374 47..403 1413 70.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:28:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26401-PA 403 GE26401-PA 1..403 1..403 2020 92.1 Plus