GH11908.complete Sequence
851 bp (851 high quality bases) assembled on 2001-09-19
GenBank Submission: AY060278
> GH11908.complete
ATTCCGAGCACCAGACCTAAATGGGATAGTTTTGTTTTCCGGCTTTTTTG
TTTTTCGGTGTGAGTTTGTGAGCTTGTAACCGTTCGAAATTTTGTGCTTT
AAGTTTTTGTTGGACAAGTCGCTGCCATGTTTCACCATGAATTCGAACGA
GATCAGTGCATCATCGAGGAATACCAAAGACGCCCCAAAAACGATGTCCT
CCAATGGTAGTGGTGCGGTGGACGGCGTAAGTCCTTGTCATCTGGCCGCA
ACTGCGGTTGTTTCCACTGCCAGAGGAGGCGTCAGAGAAACGAGCAGAGG
ACATAAGGCTATCCGTGTATTTTTGGATCACCACGGTGGTTAGGAAATCG
CGTTGCTCTAAAACTCGCTAATCCTGGCCACTGCAAAAATTAACTTTTCG
ATGAACACATTTTTGGGAGCTATTATTGGATTCAGATTATAATAGCTCTC
ATATGCTGGGATACCCAACACTGGGATATCCTACACTGGGTAACCTATAC
TTTGGTACCCTATACCTTGGTACCCTATAATTTGGTACCCTATAGTTGGA
TACCCTTCACTTGGATGCCCTACACTTGGATACCATACACTTGGATACCC
TACCCTTGGATACCCTACCCTTGGATACCCCAAAGCTTGGATACCCCAAA
GCTTGGATACCCCAAATATGGATAACGATTGACTAGGATTCGAAATATAT
AGGATAGGTTTCTAGGATTAACTTGGATACCCCATATTTGACTGTTATTA
GGACGGCTGTTCCCAAACTCAAGAATGAATAGATTATTTAAAACGTCAAT
CTACGTTGATTAATTAAAGACTTTAATAAGCGTCAAAAAAAAAAAAAAAA
A
GH11908.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:59:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9284-RA | 995 | CG9284-RA | 65..901 | 1..837 | 4185 | 100 | Plus |
CG9284-RB | 897 | CG9284-RB | 177..896 | 118..837 | 3600 | 100 | Plus |
CG9284-RB | 897 | CG9284-RB | 53..169 | 1..117 | 585 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:30:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2R | 21145070 | chr2R | 17690058..17690774 | 118..834 | 3585 | 100 | Plus |
chr2R | 21145070 | chr2R | 17689886..17690004 | 1..119 | 580 | 99.2 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:45:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:30:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21803622..21804341 | 118..837 | 3600 | 100 | Plus |
2R | 25286936 | 2R | 21803450..21803568 | 1..119 | 595 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:18:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25260384 | 2R | 21804821..21805540 | 118..837 | 3600 | 100 | Plus |
2R | 25260384 | 2R | 21804649..21804767 | 1..119 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2019-03-16 00:30:09 has no hits.
GH11908.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:31:15 Download gff for
GH11908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2R | 17689886..17690002 | 1..117 | 99 | -> | Plus |
chr2R | 17690058..17690774 | 118..834 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:36:31 Download gff for
GH11908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9284-RB | 1..207 | 137..343 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:58:45 Download gff for
GH11908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9284-RB | 1..207 | 137..343 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:41:57 Download gff for
GH11908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9284-RB | 1..207 | 137..343 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:13:25 Download gff for
GH11908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9284-RA | 27..860 | 1..834 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:58:45 Download gff for
GH11908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9284-RA | 27..860 | 1..834 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:41:58 Download gff for
GH11908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9284-RA | 27..860 | 1..834 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:31:15 Download gff for
GH11908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21803450..21803566 | 1..117 | 100 | -> | Plus |
2R | 21803622..21804338 | 118..834 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:31:15 Download gff for
GH11908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21803450..21803566 | 1..117 | 100 | -> | Plus |
2R | 21803622..21804338 | 118..834 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:31:15 Download gff for
GH11908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21803450..21803566 | 1..117 | 100 | -> | Plus |
2R | 21803622..21804338 | 118..834 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:51:00 Download gff for
GH11908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17690955..17691071 | 1..117 | 100 | -> | Plus |
arm_2R | 17691127..17691843 | 118..834 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:51:00 Download gff for
GH11908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17690955..17691071 | 1..117 | 100 | -> | Plus |
arm_2R | 17691127..17691843 | 118..834 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:51:00 Download gff for
GH11908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17690955..17691071 | 1..117 | 100 | -> | Plus |
arm_2R | 17691127..17691843 | 118..834 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:25:11 Download gff for
GH11908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21804821..21805537 | 118..834 | 100 | | Plus |
2R | 21804649..21804765 | 1..117 | 100 | -> | Plus |
GH11908.pep Sequence
Translation from 136 to 342
> GH11908.pep
MNSNEISASSRNTKDAPKTMSSNGSGAVDGVSPCHLAATAVVSTARGGVR
ETSRGHKAIRVFLDHHGG*
Sequence GH11908.pep has no blast hits.
GH11908.hyp Sequence
Translation from 136 to 342
> GH11908.hyp
MNSNEISASSRNTKDAPKTMSSNGSGAVDGVSPCHLAATAVVSTARGGVR
ETSRGHKAIRVFLDHHGG*
Sequence GH11908.hyp has no blast hits.