Clone GH11924 Report

Search the DGRC for GH11924

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:119
Well:24
Vector:pOT2
Associated Gene/TranscriptCG13326-RA
Protein status:GH11924.pep: gold
Preliminary Size:2714
Sequenced Size:2815

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13326 2001-01-01 Release 2 assignment
CG13326 2002-01-03 Blastp of sequenced clone
CG13326 2003-01-01 Sim4 clustering to Release 3
CG13326 2008-04-29 Release 5.5 accounting
CG13326 2008-08-15 Release 5.9 accounting
CG13326 2008-12-18 5.12 accounting

Clone Sequence Records

GH11924.complete Sequence

2815 bp (2815 high quality bases) assembled on 2002-01-03

GenBank Submission: AY075330

> GH11924.complete
CTAGAGAGAAATTGTCATTTGATAAATGTTTATTTTCATATATAAAATAT
ACAAATAGATACTGTCGCGAAATCTCTTCAAACATGTCGCGAATTTCGAA
GCGCGTCTATGAGGCGAAGTCCACTTACCCGGATCGCACCAAGTCCGAGG
AGAAATCCTTCACGGAAGTGAGTGTGCCGATCAAGAAGCTGGATACGGCG
CTGCTCCTCCTGAGTTCAAAGGAGGAGTGTGTCCTGCTGACCATTTTCAG
CCACATAACGGACTTTGCCCGCCGCCAGGATGTGAATGTGCTGGAACTGA
AGGCCCATCGCTTGTTGGAGCTGTTGCTGGAGAAGGATTTGTTCATCGCG
TCGGAGAACACGATGATCCGCCGCTTTGCTCTGTACTTGCTCACTGCTCT
GCTGGACAACACGGACATGTCCACCTATGAGCCAGAACAAGCGGATCAGA
TCCTGGAGCTGGCGTGCAGATTCTACATGAAAGAGGTGGACGACTTCTGC
ATCGAGTACTTGACGTATATACTCAATGTGTGCCTGAAGGATCCCCAGAT
GGCACATGGCATTGTCGAGGCCACCGAATTCCTGGAGAAATTTAAGTTGG
TGTTCATAAGTTCGGAGAATCCGGACACCGTGTTCAACTCGATTGAGGCA
CTGCATAGGATGCTACTGGTCCAGAGTGCAGATCAAATGCTGGATTTCAC
AACACAGCCGGATTTTCCGGTAGATCGTATTATCTGTGAGGTTACCAACG
AGTTCCAGGAGATCCGCAAGGCGGCCCTTAAAACATTGAAGACTCTGCTG
GCGGACACTGGCGACGATAGCGTCTTCGAGGCACTGCATCGTTGCTACTT
CGTGCTGGAGCAGTTGGTCAAGGTGTTTTGCGAGAGTCCACAAGGGCCGG
AGGCTGCCGATGTCATCGAGGTTCTGGCCACAGCTCTGCGATCCGAGAAG
ATGACCAAGCTGTTCTTCGAGCAGAACCTCTTCGACCAGGTTGTCGAGCA
GGTGCGCAATCACATGGACCTCATGCCGCTGGAGATGCGCTGCACCATCA
TATCGATTTTCGCTGAGACGGCTCAGTACGAGCAGTTCCTACCAAGGATG
CACAAGGCCGAAATCGCAGACATGTTCCTCACCTGTTTAATGCAGAACAA
GCCGGCTCCGGCTGCCTACGTCATCCAGGGACTTCATCGCATGTCACACC
ATCCGGAAGCGCTGCGGCGAATTGTGGCCGCCTATCAGGAGGGCGCAATT
CGCAAACTGGTGGCCATCCTCATGTCGCCGGACGTGGCCATCAAGGCTCG
GGAGCAGGCGGGAGAGTTTCTGTCCCGTCTCCTTGTGGCCGCCTTCCGCG
AGACAGCTGCCCAGTTGCAAGAGCAGGACATCGCTGTTGTTCTCACCGCG
GTCATTGCGCAGGGACAGCCCACTCTGTCCATTGATCTCATCCTATTGCT
GCTGACGATCATCGAGAGCCTGGCCCAGAAAGAGGAATACCGCACAATCC
TCGGCGAGTATAGTTCACTTACCGAGCAGCTTGCCCAGCTTCTAATGCGT
TCCTTTGCCCACTCCATCCTGGTGAACAACATCTTCCGGTGCCTGTGCAC
TCTAATCGACGAGGCTCCAGTGCGTGAGACTTTGCTGGCCAACTACATAG
TCTCATCCATGAAGCGGGCCCTCAAGTCCCTGTCCAATCTGGTGAAGACC
TCGGTGACCAACTTCATTCTACAGACCACGCGCTTTAACGAGTTCATAGA
TGCCTACATCGACCGTGGGATCATGGAAGTTTTGTTGGATTTCCAGAAGC
ACGCCTTCTGCATTTCCACCTGGGGCCCGGCCATCGAGAGCATCCTTTCC
AAGTGTCCCACTATGAAGTTCGCCATTCGCAACTGCCTCACCTTCACGGA
CATCACGGCCGGCAAGGACTTTTATGTGTCGCGCAGGAAGTTTGAGGACT
TCCGCAAATTTCAGGACATTCTGCGCAACGATTGCTCGCCTTTGGATGCC
GTCCTGGTAATGAACTTTGATCGTCCCAAGCCGAATCAGAACGATGTGAT
CGCCGTGCCGCTGCGCTGCTTGAGCACGATCACGGACTTGCCTGGAGATC
AGGGTTGGGGCTACTGTAAGCGACCTGGAGATAACAACTTGCCGCAGTAT
TTGGAGGCACTCAATCAGACACTAGCGATGCACGGCTTGGTGGAGAATCC
CGAGCGCGTGCGTCGCACAATTGACTTTGAGAACGTGGCCAAGCGGAGCA
AGCTGATCGCCCAGGCGGTGAACGCCGTGATGAGCGAGAATCTTAAGATT
CTGGACCTGAACTCAACGGAGGAGTGCTGCCGGAACACGGTCCGCTGTCA
CCTGCAAGAACTGCGCCACGTGCTGCACACCAACTTCATTCCACTGGGCA
TGGTGCGCAGTGGATGCCAGTTCGAGCGGGCGATTCTCTTCAAGGGCTTG
GCCGACCAGATCGGTCTTCCATGCACCTTGCAACGCAGTGTGGACGGTCG
CATGCTGTACAACGAATTGCCACTGCCCCTGGAGCCGGAGAAGGATGTGC
ACTGCGACAAGAAGACGCTAAAGTACATGCCCTGGCGGATGCTGCGACCC
ACACACGTGGTGGACCTCCTCTACAACGTGGGCGAGCTGTATCCCATGCA
GAGTCGCCAGGCGCTGCAGTACCTGCGCCTCTACTAGTTCCCATGATCTC
TAATGCGCTCACCAAATTATCCTGTCCAATTGCTTCTCATATGCTATATG
CATGCTTATTAAAATTGTTTTATCGGGTAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAA

GH11924.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:34:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG13326-RA 2889 CG13326-RA 30..2808 1..2779 13895 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:43:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 9018245..9019791 1547..1 7720 99.9 Minus
chr2R 21145070 chr2R 9016847..9017448 2778..2177 3010 100 Minus
chr2R 21145070 chr2R 9017503..9017899 2177..1781 1970 99.7 Minus
chr2R 21145070 chr2R 9017957..9018190 1780..1547 1170 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:45:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:43:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13130909..13132455 1547..1 7735 100 Minus
2R 25286936 2R 13129510..13130112 2779..2177 3015 100 Minus
2R 25286936 2R 13130167..13130563 2177..1781 1985 100 Minus
2R 25286936 2R 13130621..13130854 1780..1547 1170 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:02:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 13132108..13133654 1547..1 7735 100 Minus
2R 25260384 2R 13130709..13131311 2779..2177 3015 100 Minus
2R 25260384 2R 13131366..13131762 2177..1781 1985 100 Minus
2R 25260384 2R 13131820..13132053 1780..1547 1170 100 Minus
Blast to na_te.dros performed on 2019-03-16 09:43:45 has no hits.

GH11924.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:44:56 Download gff for GH11924.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 9016847..9017447 2178..2778 100 <- Minus
chr2R 9017503..9017899 1781..2177 99 <- Minus
chr2R 9017957..9018189 1548..1780 100 <- Minus
chr2R 9018245..9019791 1..1547 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:36:33 Download gff for GH11924.complete
Subject Subject Range Query Range Percent Splice Strand
CG13326-RA 1..2604 84..2687 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:56:51 Download gff for GH11924.complete
Subject Subject Range Query Range Percent Splice Strand
CG13326-RA 1..2604 84..2687 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:59:19 Download gff for GH11924.complete
Subject Subject Range Query Range Percent Splice Strand
CG13326-RA 1..2604 84..2687 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:21:39 Download gff for GH11924.complete
Subject Subject Range Query Range Percent Splice Strand
CG13326-RA 1..2604 84..2687 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:44:51 Download gff for GH11924.complete
Subject Subject Range Query Range Percent Splice Strand
CG13326-RA 1..2604 84..2687 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:21:15 Download gff for GH11924.complete
Subject Subject Range Query Range Percent Splice Strand
CG13326-RA 1..2778 1..2778 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:56:51 Download gff for GH11924.complete
Subject Subject Range Query Range Percent Splice Strand
CG13326-RA 1..2778 1..2778 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:59:19 Download gff for GH11924.complete
Subject Subject Range Query Range Percent Splice Strand
CG13326-RA 1..2778 1..2778 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:21:40 Download gff for GH11924.complete
Subject Subject Range Query Range Percent Splice Strand
CG13326-RA 1..2778 1..2778 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:44:51 Download gff for GH11924.complete
Subject Subject Range Query Range Percent Splice Strand
CG13326-RA 1..2778 1..2778 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:44:56 Download gff for GH11924.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13129511..13130111 2178..2778 100 <- Minus
2R 13130167..13130563 1781..2177 100 <- Minus
2R 13130621..13130853 1548..1780 100 <- Minus
2R 13130909..13132455 1..1547 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:44:56 Download gff for GH11924.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13129511..13130111 2178..2778 100 <- Minus
2R 13130167..13130563 1781..2177 100 <- Minus
2R 13130621..13130853 1548..1780 100 <- Minus
2R 13130909..13132455 1..1547 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:44:56 Download gff for GH11924.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13129511..13130111 2178..2778 100 <- Minus
2R 13130167..13130563 1781..2177 100 <- Minus
2R 13130621..13130853 1548..1780 100 <- Minus
2R 13130909..13132455 1..1547 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:19 Download gff for GH11924.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9017016..9017616 2178..2778 100 <- Minus
arm_2R 9017672..9018068 1781..2177 100 <- Minus
arm_2R 9018126..9018358 1548..1780 100 <- Minus
arm_2R 9018414..9019960 1..1547 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:56:28 Download gff for GH11924.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13130710..13131310 2178..2778 100 <- Minus
2R 13131366..13131762 1781..2177 100 <- Minus
2R 13131820..13132052 1548..1780 100 <- Minus
2R 13132108..13133654 1..1547 100   Minus

GH11924.hyp Sequence

Translation from 2 to 2686

> GH11924.hyp
REKLSFDKCLFSYIKYTNRYCREISSNMSRISKRVYEAKSTYPDRTKSEE
KSFTEVSVPIKKLDTALLLLSSKEECVLLTIFSHITDFARRQDVNVLELK
AHRLLELLLEKDLFIASENTMIRRFALYLLTALLDNTDMSTYEPEQADQI
LELACRFYMKEVDDFCIEYLTYILNVCLKDPQMAHGIVEATEFLEKFKLV
FISSENPDTVFNSIEALHRMLLVQSADQMLDFTTQPDFPVDRIICEVTNE
FQEIRKAALKTLKTLLADTGDDSVFEALHRCYFVLEQLVKVFCESPQGPE
AADVIEVLATALRSEKMTKLFFEQNLFDQVVEQVRNHMDLMPLEMRCTII
SIFAETAQYEQFLPRMHKAEIADMFLTCLMQNKPAPAAYVIQGLHRMSHH
PEALRRIVAAYQEGAIRKLVAILMSPDVAIKAREQAGEFLSRLLVAAFRE
TAAQLQEQDIAVVLTAVIAQGQPTLSIDLILLLLTIIESLAQKEEYRTIL
GEYSSLTEQLAQLLMRSFAHSILVNNIFRCLCTLIDEAPVRETLLANYIV
SSMKRALKSLSNLVKTSVTNFILQTTRFNEFIDAYIDRGIMEVLLDFQKH
AFCISTWGPAIESILSKCPTMKFAIRNCLTFTDITAGKDFYVSRRKFEDF
RKFQDILRNDCSPLDAVLVMNFDRPKPNQNDVIAVPLRCLSTITDLPGDQ
GWGYCKRPGDNNLPQYLEALNQTLAMHGLVENPERVRRTIDFENVAKRSK
LIAQAVNAVMSENLKILDLNSTEECCRNTVRCHLQELRHVLHTNFIPLGM
VRSGCQFERAILFKGLADQIGLPCTLQRSVDGRMLYNELPLPLEPEKDVH
CDKKTLKYMPWRMLRPTHVVDLLYNVGELYPMQSRQALQYLRLY*

GH11924.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:26:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG13326-PA 867 CG13326-PA 1..867 28..894 4428 100 Plus

GH11924.pep Sequence

Translation from 83 to 2686

> GH11924.pep
MSRISKRVYEAKSTYPDRTKSEEKSFTEVSVPIKKLDTALLLLSSKEECV
LLTIFSHITDFARRQDVNVLELKAHRLLELLLEKDLFIASENTMIRRFAL
YLLTALLDNTDMSTYEPEQADQILELACRFYMKEVDDFCIEYLTYILNVC
LKDPQMAHGIVEATEFLEKFKLVFISSENPDTVFNSIEALHRMLLVQSAD
QMLDFTTQPDFPVDRIICEVTNEFQEIRKAALKTLKTLLADTGDDSVFEA
LHRCYFVLEQLVKVFCESPQGPEAADVIEVLATALRSEKMTKLFFEQNLF
DQVVEQVRNHMDLMPLEMRCTIISIFAETAQYEQFLPRMHKAEIADMFLT
CLMQNKPAPAAYVIQGLHRMSHHPEALRRIVAAYQEGAIRKLVAILMSPD
VAIKAREQAGEFLSRLLVAAFRETAAQLQEQDIAVVLTAVIAQGQPTLSI
DLILLLLTIIESLAQKEEYRTILGEYSSLTEQLAQLLMRSFAHSILVNNI
FRCLCTLIDEAPVRETLLANYIVSSMKRALKSLSNLVKTSVTNFILQTTR
FNEFIDAYIDRGIMEVLLDFQKHAFCISTWGPAIESILSKCPTMKFAIRN
CLTFTDITAGKDFYVSRRKFEDFRKFQDILRNDCSPLDAVLVMNFDRPKP
NQNDVIAVPLRCLSTITDLPGDQGWGYCKRPGDNNLPQYLEALNQTLAMH
GLVENPERVRRTIDFENVAKRSKLIAQAVNAVMSENLKILDLNSTEECCR
NTVRCHLQELRHVLHTNFIPLGMVRSGCQFERAILFKGLADQIGLPCTLQ
RSVDGRMLYNELPLPLEPEKDVHCDKKTLKYMPWRMLRPTHVVDLLYNVG
ELYPMQSRQALQYLRLY*

GH11924.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:00:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11983-PA 867 GF11983-PA 1..867 1..867 3851 82.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:00:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22528-PA 867 GG22528-PA 1..867 1..867 4375 95.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:00:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21592-PA 866 GH21592-PA 1..866 1..867 3233 67.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG13326-PA 867 CG13326-PA 1..867 1..867 4428 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:00:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19563-PA 866 GI19563-PA 1..866 1..867 3229 69.8 Plus
Dmoj\GI19982-PA 323 GI19982-PA 1..269 1..269 891 64.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:00:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10586-PA 866 GL10586-PA 1..866 1..867 3482 74 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:00:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12207-PA 866 GA12207-PA 1..866 1..867 3466 73.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:00:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20313-PA 867 GM20313-PA 1..867 1..867 4611 99.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:00:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25791-PA 833 GD25791-PA 1..833 1..867 4278 95.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:00:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21139-PA 866 GJ21139-PA 1..866 1..867 3317 69.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:00:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21635-PA 867 GK21635-PA 1..867 1..867 3247 71.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:00:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13399-PA 867 GE13399-PA 1..867 1..867 4381 95.6 Plus