Clone GH11935 Report

Search the DGRC for GH11935

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:119
Well:35
Vector:pOT2
Associated Gene/TranscriptOstgamma-RA
Protein status:GH11935.pep: gold
Preliminary Size:1226
Sequenced Size:1244

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7830 2001-01-01 Release 2 assignment
CG7830 2002-01-03 Blastp of sequenced clone
CG7830 2003-01-01 Sim4 clustering to Release 3
CG7830 2008-04-29 Release 5.5 accounting
CG7830 2008-08-15 Release 5.9 accounting
CG7830 2008-12-18 5.12 accounting

Clone Sequence Records

GH11935.complete Sequence

1244 bp (1244 high quality bases) assembled on 2002-01-03

GenBank Submission: AY075331

> GH11935.complete
CCATTCACAATCAGCTGCATGCGCCGGAAAAAATATTTTTGATTAAACGT
TTTTTCTGTGATTTTGCGTTAAAGTAGTGAGATTGTTAATTAAATCGCCT
GCAGAATGAGACTGCTGCACAAGACGCTGCTCAGCGGTCTGCTGGTAGTG
GCGTTATTCGCTATTTACGCAGCCGCGCAATCAAAATCGAAGACGGGACT
CTCGCTGTCGGAAAAAGTACAAAACCTGGTGGACATGAACGCCAAAAAGC
CGCTGCTCCGCTTCAATGGACCCAAGTTTCGGGAGTATGTGAAGAGTGCA
CCACGGAATTACTCGATGATCGTAATGCTCACCGCATTGGCTCCATCGAG
ACAATGCCAGATCTGTAGGCACGCCCACGACGAGTTCGCCATCGTGGCCA
ACTCCTACCGCTTCTCCTCGACTTACTCCAACAAACTCTTCTTTGCTATG
GTGGATTTCGATGACGGCTCCGAGGTTTTCCAACTTCTGCGCCTGAACAC
CGCCCCGGTGTTCATGCATTTCCCGGCCAAGGGCAAGCCAAAGGGAGCTG
ACACCATGGATATCCATCGCGTCGGCTTCGCCGCCGATTCTATTGCGAAA
TTCGTTGCCGAGCGAACGGACATCACCATTCGCATTTTCCGTCCACCAAA
CTATTCTGGCACCGTGGCCATGATCACATTGGTGGCCCTGGTGGGAAGTT
TTCTTTACATTCGGCGAAATAACTTGGAGTTCTTGTACAACAAGAATCTG
TGGGGTGCCATCGCAGTATTCTTCTGCTTCGCCATGATCTCGGGTCAAAT
GTGGAATCATATCCGTGGACCACCGCTGGTCCACAAGTCGCAAAATGGTG
GCGTGGCCTACATCCATGGCTCCTCGCAGGGCCAGCTGGTGGTGGAGACC
TATATCGTCATGTTCCTGAATGCCATGATTGTGCTGGGCATGATTCTGCT
GATTGAATCGGGAACACCAAAGGCTCACAACAAGAACAGGATAATGGCGA
TGACTGGTTTGGTGCTCCTCACCGTGTTCTTCTCCTTCCTGTTGTCCGTT
TTTCGTTCGAAGGCGCAGGGTTATCCCTATAGTTTCTTGTTCAAATAGAA
TCGACTGCAGTCCTGTTCCAGTTCAAGTTCACCCTATATCGTTTTTGTAG
TTAAAATCACCAGCGAGCACACATTTTTCGTGCGTGTAAAACGACTTTAA
TAAATTCCACTACTAAATTATTTGTACAAAAAAAAAAAAAAAAA

GH11935.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:34:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG7830-RA 1384 CG7830-RA 92..1323 1..1232 6160 100 Plus
CG7840-RA 1154 CG7840-RA 1102..1154 1232..1180 265 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 8306075..8306803 919..191 3495 98.6 Minus
chr2L 23010047 chr2L 8306911..8307102 192..1 945 99.5 Minus
chr2L 23010047 chr2L 8305834..8305996 1082..920 800 99.4 Minus
chr2L 23010047 chr2L 8305624..8305777 1227..1074 740 98.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:45:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:54:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8307147..8307875 919..191 3645 100 Minus
2L 23513712 2L 8307983..8308174 192..1 960 100 Minus
2L 23513712 2L 8306906..8307068 1082..920 815 100 Minus
2L 23513712 2L 8306691..8306849 1232..1074 765 98.7 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:02:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8307147..8307875 919..191 3645 100 Minus
2L 23513712 2L 8307983..8308174 192..1 960 100 Minus
2L 23513712 2L 8306906..8307068 1082..920 815 100 Minus
2L 23513712 2L 8306691..8306849 1232..1074 765 98.7 Minus
Blast to na_te.dros performed on 2019-03-15 11:54:04 has no hits.

GH11935.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:55:07 Download gff for GH11935.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 8305624..8305768 1083..1227 100 <- Minus
chr2L 8305834..8305996 920..1082 99 <- Minus
chr2L 8306075..8306801 193..919 98 <- Minus
chr2L 8306911..8307102 1..192 99   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:56:53 Download gff for GH11935.complete
Subject Subject Range Query Range Percent Splice Strand
CG7830-RA 1..993 106..1098 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:34:13 Download gff for GH11935.complete
Subject Subject Range Query Range Percent Splice Strand
Ostgamma-RA 1..993 106..1098 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:21:40 Download gff for GH11935.complete
Subject Subject Range Query Range Percent Splice Strand
CG7830-RA 1..993 106..1098 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:44:56 Download gff for GH11935.complete
Subject Subject Range Query Range Percent Splice Strand
Ostgamma-RA 1..993 106..1098 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:21:16 Download gff for GH11935.complete
Subject Subject Range Query Range Percent Splice Strand
CG7830-RA 15..1241 1..1227 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:56:52 Download gff for GH11935.complete
Subject Subject Range Query Range Percent Splice Strand
CG7830-RA 15..1241 1..1227 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:34:13 Download gff for GH11935.complete
Subject Subject Range Query Range Percent Splice Strand
Ostgamma-RA 19..1245 1..1227 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:21:41 Download gff for GH11935.complete
Subject Subject Range Query Range Percent Splice Strand
CG7830-RA 15..1241 1..1227 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:44:56 Download gff for GH11935.complete
Subject Subject Range Query Range Percent Splice Strand
Ostgamma-RA 19..1245 1..1227 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:55:07 Download gff for GH11935.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8306696..8306840 1083..1227 100 <- Minus
2L 8306906..8307068 920..1082 100 <- Minus
2L 8307147..8307873 193..919 100 <- Minus
2L 8307983..8308174 1..192 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:55:07 Download gff for GH11935.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8306696..8306840 1083..1227 100 <- Minus
2L 8306906..8307068 920..1082 100 <- Minus
2L 8307147..8307873 193..919 100 <- Minus
2L 8307983..8308174 1..192 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:55:07 Download gff for GH11935.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8306696..8306840 1083..1227 100 <- Minus
2L 8306906..8307068 920..1082 100 <- Minus
2L 8307147..8307873 193..919 100 <- Minus
2L 8307983..8308174 1..192 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:34:13 Download gff for GH11935.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8306696..8306840 1083..1227 100 <- Minus
arm_2L 8306906..8307068 920..1082 100 <- Minus
arm_2L 8307147..8307873 193..919 100 <- Minus
arm_2L 8307983..8308174 1..192 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:56:29 Download gff for GH11935.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8307147..8307873 193..919 100 <- Minus
2L 8307983..8308174 1..192 100   Minus
2L 8306696..8306840 1083..1227 100 <- Minus
2L 8306906..8307068 920..1082 100 <- Minus

GH11935.pep Sequence

Translation from 105 to 1097

> GH11935.pep
MRLLHKTLLSGLLVVALFAIYAAAQSKSKTGLSLSEKVQNLVDMNAKKPL
LRFNGPKFREYVKSAPRNYSMIVMLTALAPSRQCQICRHAHDEFAIVANS
YRFSSTYSNKLFFAMVDFDDGSEVFQLLRLNTAPVFMHFPAKGKPKGADT
MDIHRVGFAADSIAKFVAERTDITIRIFRPPNYSGTVAMITLVALVGSFL
YIRRNNLEFLYNKNLWGAIAVFFCFAMISGQMWNHIRGPPLVHKSQNGGV
AYIHGSSQGQLVVETYIVMFLNAMIVLGMILLIESGTPKAHNKNRIMAMT
GLVLLTVFFSFLLSVFRSKAQGYPYSFLFK*

GH11935.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:00:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15266-PA 330 GF15266-PA 1..330 1..330 1691 95.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:00:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23457-PA 330 GG23457-PA 1..330 1..330 1750 99.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:00:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10178-PA 330 GH10178-PA 1..330 1..330 1543 87.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:13:04
Subject Length Description Subject Range Query Range Score Percent Strand
Ostgamma-PA 330 CG7830-PA 1..330 1..330 1687 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:00:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14239-PA 331 GI14239-PA 1..331 1..330 1617 90.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:00:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19384-PA 330 GL19384-PA 1..330 1..330 1651 93 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:00:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20614-PA 330 GA20614-PA 1..330 1..330 1651 93 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:00:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13078-PA 330 GM13078-PA 1..330 1..330 1752 99.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22422-PA 330 GD22422-PA 1..330 1..330 1755 99.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20558-PA 330 GJ20558-PA 1..330 1..330 1630 91.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23820-PA 329 GK23820-PA 1..329 1..330 1589 90 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11063-PA 330 GE11063-PA 1..330 1..330 1731 97.6 Plus

GH11935.hyp Sequence

Translation from 105 to 1097

> GH11935.hyp
MRLLHKTLLSGLLVVALFAIYAAAQSKSKTGLSLSEKVQNLVDMNAKKPL
LRFNGPKFREYVKSAPRNYSMIVMLTALAPSRQCQICRHAHDEFAIVANS
YRFSSTYSNKLFFAMVDFDDGSEVFQLLRLNTAPVFMHFPAKGKPKGADT
MDIHRVGFAADSIAKFVAERTDITIRIFRPPNYSGTVAMITLVALVGSFL
YIRRNNLEFLYNKNLWGAIAVFFCFAMISGQMWNHIRGPPLVHKSQNGGV
AYIHGSSQGQLVVETYIVMFLNAMIVLGMILLIESGTPKAHNKNRIMAMT
GLVLLTVFFSFLLSVFRSKAQGYPYSFLFK*

GH11935.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:26:14
Subject Length Description Subject Range Query Range Score Percent Strand
Ostgamma-PA 330 CG7830-PA 1..330 1..330 1687 100 Plus