GH11945.complete Sequence
2147 bp (2147 high quality bases) assembled on 2002-06-21
GenBank Submission: AY128418
> GH11945.complete
GTCGAAGCGCGTGGTCGTCGAGTTTTCCGAGAAAATCCAGTGGGAAAGCA
AACAGTGCGAGGCAGCAGCAGCAGCAGCAACAACAACTATCTAGAGCAAA
GGAAATTTGACAGACTTTGATGTGAACCGGACACGAGGGCGAGCACAGGA
ACAGACGGCAACCAAGCGAACAGCAAAAAAGAACCAAAGCAGAAGAGCCA
CGCCAATAGTGTGCAAATTAATATAGTTGGAGCAGCATGGATGAGGAGCA
CGACGACGATCGAATAATATGAGATTAGATGGGGCTCTAGAGCCCCGGCC
CCGTCAAGGAGCTGCCACAATCAAGGGCCGCCAGCCCCTGAGGCGCGAAA
CACGCGAACCATGTGAGACGCAACAGCAGCAGCCAGCTGACGAAGACGAC
GAGGCCACAGACGCTGAGTGTTTGACCACCAACAGCAGCAGCAGCAGCAG
CAGCACCAGCAGCACCAGCAGCAACAATTGCCAAGCCAACTTGGTCTGCA
ATCCAAAGAGAACAACATCAGCAACGCCCACGCCTAGAAAAACAACCGGC
GGCAGAGGCAATACCAGGCATACCATATTAATGGCGCCCAACGTGGGGCA
TCAGCGGAAGAGCCTTGGCCTGCGACTTCCGATGAAGCAGGGCCGCAGCC
GGCGGAGAATGATGGGTGCGGAATGGGGCTGGGAGCGCCTTAACGGCCTG
CTCCTGTGCCTGATTTCCGTTATTGCCCTGCTGCCGCCGCTGACGCTCGG
CGATGACGGCGATAATTTCTTTGCCGTGAATGCCTTTAGTGCGGGTCCGG
AGACGACAACGCCAGAGTTCGATTATGCCAGTCGTGGGCAGAAGAAGTTC
GGCGACAAGTGCGATAATACCCTGGAATGCGGCTTCCCCGGCTCCATCTG
CGATCCCAAGAAGAAGTCCTGCCAGTGCACCGAGGATCTGCCCGTCACCA
ATCACTATGACAAATGTGGCAAAGAGGCCGCCGTGAACGAGTCCTGCTTC
TTTAACGAGCAGTGCGAGATGAGATACTTCCAGACGGAGTGCCGCGATGG
ACGCTGCATCTGCCGGTTCGAGATGTCACCCATTTGGGGCAAGGACGGAT
CCGTGGAGTGCAAAGGGCGCCAGGACAAGAGGGGACCCGAGACCTACATC
GACCCGGCCATGATTGGCGTGCTGGTAGGAATGGCATTGATGTTTGTTAT
TATTTGTGTCGTCCTGCGATTGTTTAGCCAAGCTCGCTGGCGTGAGAACC
GAACCATCTTCAACACGCCCAATCCTCGCCTGATGAACGTCTCCCTGCTG
CGGGACAGCAAGCTGCTCCACGGCCAGGAGCGCCGAGGGTCCAGGATGTC
GGTGCGAGCGCCATCTCGTCAGCCCAGCATGGCCTCCCTGCGGCCCCACT
CCCCCAATCCGTCGCTAGGCTCCCATTCCGAGTCGCATGGCAGCAATGCA
TCCGCAGCCTCGGTGCGCTCCAACCGCAGCAACTCGGTGGCTCCCGGCAA
GGTCGTCCACCATGAGCGCCACGGATCCGCCCATCGCCAGCACCACCCAC
ATGGCCACCAGCCGAAGGAGCAGCCGCAGTCGCCGCAGTCGCAGGACCAG
TCGCTGATCACCAACATCACCACGAATCCGGTGGCCGAGAGCGTTACCGT
CGAGATCATCGAGCCGGGTCAGAAGTAAGGGAACAGGATGGCTACTTCGA
GCACAAAGCTTGATTTTGCATTGGAAAGATTAACTGGCTAACTCTCTGAC
ACACGACAACAGGATACGAAATGCAGCACAAACTATAGGAAGATTTAGTC
ACGGTATATGCACGCGATAATAAGGCGGGCACGCTCCCAAAAGGGGCGTG
GCACCGGTGAACAAAACACAAAAAAAAAATCGAATTACACATGGAGGCCA
TTGTTCGACTCTTTTTGACAAAGAACATTTTTGCGATTAATGGAAATTTT
TTAACCAAAACAATTATATACTTACTATATGAATATGGAGCGTGTAAAAC
AAAACACACACACGCACACATACACCCAGAACAATGCTAAATGCTAAATA
ATTACGTACGACTACACCGTAAAAAAAATAATTGAAAAAAACCTTGCATA
ACAAATTCATACTACTCTTTTTTTCAACCAAAAAAAAAAAAAAAAAA
GH11945.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 18:45:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14509.a | 2436 | CG14509.a | 280..1698 | 1..1419 | 7095 | 100 | Plus |
CG14509.i | 3624 | CG14509.i | 137..1555 | 1..1419 | 7095 | 100 | Plus |
CG14509.d | 4446 | CG14509.d | 249..1667 | 1..1419 | 7095 | 100 | Plus |
CG14509.a | 2436 | CG14509.a | 1705..2429 | 1417..2141 | 3625 | 100 | Plus |
CG14509.i | 3624 | CG14509.i | 1562..2286 | 1417..2141 | 3625 | 100 | Plus |
CG14509.d | 4446 | CG14509.d | 1674..2398 | 1417..2141 | 3625 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:11:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 24996147..24996862 | 2129..1417 | 3440 | 99 | Minus |
chr3R | 27901430 | chr3R | 25004031..25004731 | 821..108 | 3275 | 97.9 | Minus |
chr3R | 27901430 | chr3R | 24999423..24999611 | 1419..1231 | 945 | 100 | Minus |
chr3R | 27901430 | chr3R | 25001534..25001687 | 974..821 | 770 | 100 | Minus |
chr3R | 27901430 | chr3R | 25000468..25000611 | 1116..973 | 705 | 99.3 | Minus |
chr3R | 27901430 | chr3R | 25000258..25000374 | 1230..1114 | 585 | 100 | Minus |
chr3R | 27901430 | chr3R | 25017723..25017829 | 107..1 | 535 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:45:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:11:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29173272..29173996 | 2141..1417 | 3625 | 100 | Minus |
3R | 32079331 | 3R | 29181159..29181872 | 821..108 | 3570 | 100 | Minus |
3R | 32079331 | 3R | 29176554..29176742 | 1419..1231 | 945 | 100 | Minus |
3R | 32079331 | 3R | 29178667..29178820 | 974..821 | 770 | 100 | Minus |
3R | 32079331 | 3R | 29177599..29177742 | 1116..973 | 720 | 100 | Minus |
3R | 32079331 | 3R | 29177389..29177505 | 1230..1114 | 585 | 100 | Minus |
3R | 32079331 | 3R | 29194888..29194994 | 107..1 | 535 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:18:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 28914103..28914827 | 2141..1417 | 3625 | 100 | Minus |
3R | 31820162 | 3R | 28921990..28922703 | 821..108 | 3570 | 100 | Minus |
3R | 31820162 | 3R | 28917385..28917573 | 1419..1231 | 945 | 100 | Minus |
3R | 31820162 | 3R | 28919498..28919651 | 974..821 | 770 | 100 | Minus |
3R | 31820162 | 3R | 28918430..28918573 | 1116..973 | 720 | 100 | Minus |
3R | 31820162 | 3R | 28918220..28918336 | 1230..1114 | 585 | 100 | Minus |
3R | 31820162 | 3R | 28935719..28935825 | 107..1 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-16 15:11:55 has no hits.
GH11945.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:12:38 Download gff for
GH11945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 24996147..24996860 | 1419..2129 | 99 | <- | Minus |
chr3R | 24999424..24999611 | 1231..1418 | 100 | <- | Minus |
chr3R | 25000258..25000372 | 1116..1230 | 100 | <- | Minus |
chr3R | 25000469..25000609 | 975..1115 | 99 | <- | Minus |
chr3R | 25001534..25001686 | 822..974 | 100 | <- | Minus |
chr3R | 25004031..25004731 | 108..821 | 92 | <- | Minus |
chr3R | 25017723..25017829 | 1..107 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:16:58 Download gff for
GH11945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14509-RB | 1..1410 | 269..1678 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:19:41 Download gff for
GH11945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14509-RB | 1..1410 | 269..1678 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:41:38 Download gff for
GH11945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14509-RB | 1..1410 | 269..1678 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:10:44 Download gff for
GH11945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14509-RB | 1..1410 | 269..1678 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:42:13 Download gff for
GH11945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14509-RB | 1..1410 | 269..1678 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:16:57 Download gff for
GH11945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14509-RB | 1..2129 | 1..2129 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:19:41 Download gff for
GH11945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14509-RB | 1..2129 | 1..2129 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:41:38 Download gff for
GH11945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14509-RB | 1..2129 | 1..2129 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:10:44 Download gff for
GH11945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14509-RB | 1..2129 | 1..2129 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:42:13 Download gff for
GH11945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14509-RB | 1..2129 | 1..2129 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:12:38 Download gff for
GH11945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29173284..29173994 | 1419..2129 | 100 | <- | Minus |
3R | 29176555..29176742 | 1231..1418 | 100 | <- | Minus |
3R | 29177389..29177503 | 1116..1230 | 100 | <- | Minus |
3R | 29177600..29177740 | 975..1115 | 100 | <- | Minus |
3R | 29178667..29178819 | 822..974 | 100 | <- | Minus |
3R | 29181159..29181872 | 108..821 | 100 | <- | Minus |
3R | 29194888..29194994 | 1..107 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:12:38 Download gff for
GH11945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29173284..29173994 | 1419..2129 | 100 | <- | Minus |
3R | 29176555..29176742 | 1231..1418 | 100 | <- | Minus |
3R | 29177389..29177503 | 1116..1230 | 100 | <- | Minus |
3R | 29177600..29177740 | 975..1115 | 100 | <- | Minus |
3R | 29178667..29178819 | 822..974 | 100 | <- | Minus |
3R | 29181159..29181872 | 108..821 | 100 | <- | Minus |
3R | 29194888..29194994 | 1..107 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:12:38 Download gff for
GH11945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29173284..29173994 | 1419..2129 | 100 | <- | Minus |
3R | 29176555..29176742 | 1231..1418 | 100 | <- | Minus |
3R | 29177389..29177503 | 1116..1230 | 100 | <- | Minus |
3R | 29177600..29177740 | 975..1115 | 100 | <- | Minus |
3R | 29178667..29178819 | 822..974 | 100 | <- | Minus |
3R | 29181159..29181872 | 108..821 | 100 | <- | Minus |
3R | 29194888..29194994 | 1..107 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:41:38 Download gff for
GH11945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25004389..25004541 | 822..974 | 100 | <- | Minus |
arm_3R | 25002277..25002464 | 1231..1418 | 100 | <- | Minus |
arm_3R | 25003111..25003225 | 1116..1230 | 100 | <- | Minus |
arm_3R | 25003322..25003462 | 975..1115 | 100 | <- | Minus |
arm_3R | 24999006..24999716 | 1419..2129 | 100 | <- | Minus |
arm_3R | 25006881..25007594 | 108..821 | 100 | <- | Minus |
arm_3R | 25020610..25020716 | 1..107 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:43:04 Download gff for
GH11945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28935719..28935825 | 1..107 | 100 | | Minus |
3R | 28914115..28914825 | 1419..2129 | 100 | <- | Minus |
3R | 28917386..28917573 | 1231..1418 | 100 | <- | Minus |
3R | 28918220..28918334 | 1116..1230 | 100 | <- | Minus |
3R | 28918431..28918571 | 975..1115 | 100 | <- | Minus |
3R | 28919498..28919650 | 822..974 | 100 | <- | Minus |
3R | 28921990..28922703 | 108..821 | 100 | <- | Minus |
GH11945.pep Sequence
Translation from 268 to 1677
> GH11945.pep
MRLDGALEPRPRQGAATIKGRQPLRRETREPCETQQQQPADEDDEATDAE
CLTTNSSSSSSSTSSTSSNNCQANLVCNPKRTTSATPTPRKTTGGRGNTR
HTILMAPNVGHQRKSLGLRLPMKQGRSRRRMMGAEWGWERLNGLLLCLIS
VIALLPPLTLGDDGDNFFAVNAFSAGPETTTPEFDYASRGQKKFGDKCDN
TLECGFPGSICDPKKKSCQCTEDLPVTNHYDKCGKEAAVNESCFFNEQCE
MRYFQTECRDGRCICRFEMSPIWGKDGSVECKGRQDKRGPETYIDPAMIG
VLVGMALMFVIICVVLRLFSQARWRENRTIFNTPNPRLMNVSLLRDSKLL
HGQERRGSRMSVRAPSRQPSMASLRPHSPNPSLGSHSESHGSNASAASVR
SNRSNSVAPGKVVHHERHGSAHRQHHPHGHQPKEQPQSPQSQDQSLITNI
TTNPVAESVTVEIIEPGQK*
GH11945.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:59:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF18410-PA | 289 | GF18410-PA | 64..289 | 249..469 | 999 | 88.5 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:59:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG12031-PA | 471 | GG12031-PA | 1..188 | 1..184 | 764 | 82.6 | Plus |
Dere\GG21164-PA | 124 | GG21164-PA | 51..124 | 248..321 | 414 | 98.6 | Plus |
Dere\GG12031-PA | 471 | GG12031-PA | 383..471 | 381..469 | 383 | 97.8 | Plus |
Dere\GG12031-PA | 471 | GG12031-PA | 193..261 | 316..384 | 340 | 94.2 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:59:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH14008-PA | 468 | GH14008-PA | 159..459 | 129..469 | 1152 | 67.5 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jus-PB | 469 | CG14509-PB | 1..469 | 1..469 | 2511 | 100 | Plus |
jus-PD | 472 | CG14509-PD | 1..472 | 1..469 | 2497 | 99.4 | Plus |
jus-PC | 509 | CG14509-PC | 1..428 | 1..428 | 2088 | 91.8 | Plus |
jus-PE | 506 | CG14509-PE | 1..425 | 1..428 | 2082 | 92.1 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:59:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL13608-PA | 670 | GL13608-PA | 207..462 | 130..384 | 1312 | 91.4 | Plus |
Dper\GL13608-PA | 670 | GL13608-PA | 546..670 | 364..469 | 225 | 56 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:59:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA13040-PB | 550 | GA13040-PB | 1..550 | 1..469 | 1695 | 66.7 | Plus |
Dpse\GA13040-PC | 569 | GA13040-PC | 1..458 | 1..384 | 1472 | 66.4 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:59:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM12256-PA | 579 | GM12256-PA | 1..376 | 1..384 | 1985 | 96.9 | Plus |
Dsec\GM12256-PA | 579 | GM12256-PA | 484..579 | 374..469 | 385 | 91.7 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:59:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD17939-PA | 465 | GD17939-PA | 1..465 | 1..469 | 2472 | 98.5 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:59:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ14233-PA | 519 | GJ14233-PA | 168..453 | 145..428 | 1181 | 78.2 | Plus |
Dvir\GJ14234-PA | 71 | GJ14234-PA | 15..71 | 407..469 | 183 | 68.2 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:59:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK22496-PA | 545 | GK22496-PA | 211..545 | 138..469 | 1555 | 89.9 | Plus |
Dwil\GK20235-PA | 250 | GK20235-PA | 32..180 | 236..384 | 806 | 97.3 | Plus |
Dwil\GK22496-PA | 545 | GK22496-PA | 1..97 | 1..78 | 170 | 52.6 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:59:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE10469-PA | 600 | GE10469-PA | 1..387 | 1..384 | 1879 | 94.6 | Plus |
Dyak\GE10469-PA | 600 | GE10469-PA | 512..600 | 381..469 | 378 | 96.6 | Plus |
GH11945.hyp Sequence
Translation from 268 to 1677
> GH11945.hyp
MRLDGALEPRPRQGAATIKGRQPLRRETREPCETQQQQPADEDDEATDAE
CLTTNSSSSSSSTSSTSSNNCQANLVCNPKRTTSATPTPRKTTGGRGNTR
HTILMAPNVGHQRKSLGLRLPMKQGRSRRRMMGAEWGWERLNGLLLCLIS
VIALLPPLTLGDDGDNFFAVNAFSAGPETTTPEFDYASRGQKKFGDKCDN
TLECGFPGSICDPKKKSCQCTEDLPVTNHYDKCGKEAAVNESCFFNEQCE
MRYFQTECRDGRCICRFEMSPIWGKDGSVECKGRQDKRGPETYIDPAMIG
VLVGMALMFVIICVVLRLFSQARWRENRTIFNTPNPRLMNVSLLRDSKLL
HGQERRGSRMSVRAPSRQPSMASLRPHSPNPSLGSHSESHGSNASAASVR
SNRSNSVAPGKVVHHERHGSAHRQHHPHGHQPKEQPQSPQSQDQSLITNI
TTNPVAESVTVEIIEPGQK*
GH11945.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:26:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14509-PB | 469 | CG14509-PB | 1..469 | 1..469 | 2511 | 100 | Plus |
CG14509-PD | 472 | CG14509-PD | 1..472 | 1..469 | 2497 | 99.4 | Plus |
CG14509-PC | 509 | CG14509-PC | 1..428 | 1..428 | 2088 | 91.8 | Plus |
CG14509-PE | 506 | CG14509-PE | 1..425 | 1..428 | 2082 | 92.1 | Plus |