Clone GH11945 Report

Search the DGRC for GH11945

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:119
Well:45
Vector:pOT2
Associated Gene/TranscriptCG14509-RB
Protein status:GH11945.pep: gold
Preliminary Size:2061
Sequenced Size:2147

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14509 2001-01-01 Release 2 assignment
CG14510 2001-01-01 Release 2 assignment
CG14509 2002-06-21 Blastp of sequenced clone
CG14509 2008-04-29 Release 5.5 accounting
CG14509 2008-08-15 Release 5.9 accounting
CG14509 2008-12-18 5.12 accounting

Clone Sequence Records

GH11945.complete Sequence

2147 bp (2147 high quality bases) assembled on 2002-06-21

GenBank Submission: AY128418

> GH11945.complete
GTCGAAGCGCGTGGTCGTCGAGTTTTCCGAGAAAATCCAGTGGGAAAGCA
AACAGTGCGAGGCAGCAGCAGCAGCAGCAACAACAACTATCTAGAGCAAA
GGAAATTTGACAGACTTTGATGTGAACCGGACACGAGGGCGAGCACAGGA
ACAGACGGCAACCAAGCGAACAGCAAAAAAGAACCAAAGCAGAAGAGCCA
CGCCAATAGTGTGCAAATTAATATAGTTGGAGCAGCATGGATGAGGAGCA
CGACGACGATCGAATAATATGAGATTAGATGGGGCTCTAGAGCCCCGGCC
CCGTCAAGGAGCTGCCACAATCAAGGGCCGCCAGCCCCTGAGGCGCGAAA
CACGCGAACCATGTGAGACGCAACAGCAGCAGCCAGCTGACGAAGACGAC
GAGGCCACAGACGCTGAGTGTTTGACCACCAACAGCAGCAGCAGCAGCAG
CAGCACCAGCAGCACCAGCAGCAACAATTGCCAAGCCAACTTGGTCTGCA
ATCCAAAGAGAACAACATCAGCAACGCCCACGCCTAGAAAAACAACCGGC
GGCAGAGGCAATACCAGGCATACCATATTAATGGCGCCCAACGTGGGGCA
TCAGCGGAAGAGCCTTGGCCTGCGACTTCCGATGAAGCAGGGCCGCAGCC
GGCGGAGAATGATGGGTGCGGAATGGGGCTGGGAGCGCCTTAACGGCCTG
CTCCTGTGCCTGATTTCCGTTATTGCCCTGCTGCCGCCGCTGACGCTCGG
CGATGACGGCGATAATTTCTTTGCCGTGAATGCCTTTAGTGCGGGTCCGG
AGACGACAACGCCAGAGTTCGATTATGCCAGTCGTGGGCAGAAGAAGTTC
GGCGACAAGTGCGATAATACCCTGGAATGCGGCTTCCCCGGCTCCATCTG
CGATCCCAAGAAGAAGTCCTGCCAGTGCACCGAGGATCTGCCCGTCACCA
ATCACTATGACAAATGTGGCAAAGAGGCCGCCGTGAACGAGTCCTGCTTC
TTTAACGAGCAGTGCGAGATGAGATACTTCCAGACGGAGTGCCGCGATGG
ACGCTGCATCTGCCGGTTCGAGATGTCACCCATTTGGGGCAAGGACGGAT
CCGTGGAGTGCAAAGGGCGCCAGGACAAGAGGGGACCCGAGACCTACATC
GACCCGGCCATGATTGGCGTGCTGGTAGGAATGGCATTGATGTTTGTTAT
TATTTGTGTCGTCCTGCGATTGTTTAGCCAAGCTCGCTGGCGTGAGAACC
GAACCATCTTCAACACGCCCAATCCTCGCCTGATGAACGTCTCCCTGCTG
CGGGACAGCAAGCTGCTCCACGGCCAGGAGCGCCGAGGGTCCAGGATGTC
GGTGCGAGCGCCATCTCGTCAGCCCAGCATGGCCTCCCTGCGGCCCCACT
CCCCCAATCCGTCGCTAGGCTCCCATTCCGAGTCGCATGGCAGCAATGCA
TCCGCAGCCTCGGTGCGCTCCAACCGCAGCAACTCGGTGGCTCCCGGCAA
GGTCGTCCACCATGAGCGCCACGGATCCGCCCATCGCCAGCACCACCCAC
ATGGCCACCAGCCGAAGGAGCAGCCGCAGTCGCCGCAGTCGCAGGACCAG
TCGCTGATCACCAACATCACCACGAATCCGGTGGCCGAGAGCGTTACCGT
CGAGATCATCGAGCCGGGTCAGAAGTAAGGGAACAGGATGGCTACTTCGA
GCACAAAGCTTGATTTTGCATTGGAAAGATTAACTGGCTAACTCTCTGAC
ACACGACAACAGGATACGAAATGCAGCACAAACTATAGGAAGATTTAGTC
ACGGTATATGCACGCGATAATAAGGCGGGCACGCTCCCAAAAGGGGCGTG
GCACCGGTGAACAAAACACAAAAAAAAAATCGAATTACACATGGAGGCCA
TTGTTCGACTCTTTTTGACAAAGAACATTTTTGCGATTAATGGAAATTTT
TTAACCAAAACAATTATATACTTACTATATGAATATGGAGCGTGTAAAAC
AAAACACACACACGCACACATACACCCAGAACAATGCTAAATGCTAAATA
ATTACGTACGACTACACCGTAAAAAAAATAATTGAAAAAAACCTTGCATA
ACAAATTCATACTACTCTTTTTTTCAACCAAAAAAAAAAAAAAAAAA

GH11945.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:45:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG14509.a 2436 CG14509.a 280..1698 1..1419 7095 100 Plus
CG14509.i 3624 CG14509.i 137..1555 1..1419 7095 100 Plus
CG14509.d 4446 CG14509.d 249..1667 1..1419 7095 100 Plus
CG14509.a 2436 CG14509.a 1705..2429 1417..2141 3625 100 Plus
CG14509.i 3624 CG14509.i 1562..2286 1417..2141 3625 100 Plus
CG14509.d 4446 CG14509.d 1674..2398 1417..2141 3625 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:11:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 24996147..24996862 2129..1417 3440 99 Minus
chr3R 27901430 chr3R 25004031..25004731 821..108 3275 97.9 Minus
chr3R 27901430 chr3R 24999423..24999611 1419..1231 945 100 Minus
chr3R 27901430 chr3R 25001534..25001687 974..821 770 100 Minus
chr3R 27901430 chr3R 25000468..25000611 1116..973 705 99.3 Minus
chr3R 27901430 chr3R 25000258..25000374 1230..1114 585 100 Minus
chr3R 27901430 chr3R 25017723..25017829 107..1 535 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:45:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:11:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29173272..29173996 2141..1417 3625 100 Minus
3R 32079331 3R 29181159..29181872 821..108 3570 100 Minus
3R 32079331 3R 29176554..29176742 1419..1231 945 100 Minus
3R 32079331 3R 29178667..29178820 974..821 770 100 Minus
3R 32079331 3R 29177599..29177742 1116..973 720 100 Minus
3R 32079331 3R 29177389..29177505 1230..1114 585 100 Minus
3R 32079331 3R 29194888..29194994 107..1 535 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:18:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 28914103..28914827 2141..1417 3625 100 Minus
3R 31820162 3R 28921990..28922703 821..108 3570 100 Minus
3R 31820162 3R 28917385..28917573 1419..1231 945 100 Minus
3R 31820162 3R 28919498..28919651 974..821 770 100 Minus
3R 31820162 3R 28918430..28918573 1116..973 720 100 Minus
3R 31820162 3R 28918220..28918336 1230..1114 585 100 Minus
3R 31820162 3R 28935719..28935825 107..1 535 100 Minus
Blast to na_te.dros performed on 2019-03-16 15:11:55 has no hits.

GH11945.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:12:38 Download gff for GH11945.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 24996147..24996860 1419..2129 99 <- Minus
chr3R 24999424..24999611 1231..1418 100 <- Minus
chr3R 25000258..25000372 1116..1230 100 <- Minus
chr3R 25000469..25000609 975..1115 99 <- Minus
chr3R 25001534..25001686 822..974 100 <- Minus
chr3R 25004031..25004731 108..821 92 <- Minus
chr3R 25017723..25017829 1..107 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:16:58 Download gff for GH11945.complete
Subject Subject Range Query Range Percent Splice Strand
CG14509-RB 1..1410 269..1678 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:19:41 Download gff for GH11945.complete
Subject Subject Range Query Range Percent Splice Strand
CG14509-RB 1..1410 269..1678 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:41:38 Download gff for GH11945.complete
Subject Subject Range Query Range Percent Splice Strand
CG14509-RB 1..1410 269..1678 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:10:44 Download gff for GH11945.complete
Subject Subject Range Query Range Percent Splice Strand
CG14509-RB 1..1410 269..1678 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:42:13 Download gff for GH11945.complete
Subject Subject Range Query Range Percent Splice Strand
CG14509-RB 1..1410 269..1678 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:16:57 Download gff for GH11945.complete
Subject Subject Range Query Range Percent Splice Strand
CG14509-RB 1..2129 1..2129 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:19:41 Download gff for GH11945.complete
Subject Subject Range Query Range Percent Splice Strand
CG14509-RB 1..2129 1..2129 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:41:38 Download gff for GH11945.complete
Subject Subject Range Query Range Percent Splice Strand
CG14509-RB 1..2129 1..2129 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:10:44 Download gff for GH11945.complete
Subject Subject Range Query Range Percent Splice Strand
CG14509-RB 1..2129 1..2129 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:42:13 Download gff for GH11945.complete
Subject Subject Range Query Range Percent Splice Strand
CG14509-RB 1..2129 1..2129 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:12:38 Download gff for GH11945.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29173284..29173994 1419..2129 100 <- Minus
3R 29176555..29176742 1231..1418 100 <- Minus
3R 29177389..29177503 1116..1230 100 <- Minus
3R 29177600..29177740 975..1115 100 <- Minus
3R 29178667..29178819 822..974 100 <- Minus
3R 29181159..29181872 108..821 100 <- Minus
3R 29194888..29194994 1..107 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:12:38 Download gff for GH11945.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29173284..29173994 1419..2129 100 <- Minus
3R 29176555..29176742 1231..1418 100 <- Minus
3R 29177389..29177503 1116..1230 100 <- Minus
3R 29177600..29177740 975..1115 100 <- Minus
3R 29178667..29178819 822..974 100 <- Minus
3R 29181159..29181872 108..821 100 <- Minus
3R 29194888..29194994 1..107 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:12:38 Download gff for GH11945.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29173284..29173994 1419..2129 100 <- Minus
3R 29176555..29176742 1231..1418 100 <- Minus
3R 29177389..29177503 1116..1230 100 <- Minus
3R 29177600..29177740 975..1115 100 <- Minus
3R 29178667..29178819 822..974 100 <- Minus
3R 29181159..29181872 108..821 100 <- Minus
3R 29194888..29194994 1..107 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:41:38 Download gff for GH11945.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25004389..25004541 822..974 100 <- Minus
arm_3R 25002277..25002464 1231..1418 100 <- Minus
arm_3R 25003111..25003225 1116..1230 100 <- Minus
arm_3R 25003322..25003462 975..1115 100 <- Minus
arm_3R 24999006..24999716 1419..2129 100 <- Minus
arm_3R 25006881..25007594 108..821 100 <- Minus
arm_3R 25020610..25020716 1..107 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:43:04 Download gff for GH11945.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28935719..28935825 1..107 100   Minus
3R 28914115..28914825 1419..2129 100 <- Minus
3R 28917386..28917573 1231..1418 100 <- Minus
3R 28918220..28918334 1116..1230 100 <- Minus
3R 28918431..28918571 975..1115 100 <- Minus
3R 28919498..28919650 822..974 100 <- Minus
3R 28921990..28922703 108..821 100 <- Minus

GH11945.pep Sequence

Translation from 268 to 1677

> GH11945.pep
MRLDGALEPRPRQGAATIKGRQPLRRETREPCETQQQQPADEDDEATDAE
CLTTNSSSSSSSTSSTSSNNCQANLVCNPKRTTSATPTPRKTTGGRGNTR
HTILMAPNVGHQRKSLGLRLPMKQGRSRRRMMGAEWGWERLNGLLLCLIS
VIALLPPLTLGDDGDNFFAVNAFSAGPETTTPEFDYASRGQKKFGDKCDN
TLECGFPGSICDPKKKSCQCTEDLPVTNHYDKCGKEAAVNESCFFNEQCE
MRYFQTECRDGRCICRFEMSPIWGKDGSVECKGRQDKRGPETYIDPAMIG
VLVGMALMFVIICVVLRLFSQARWRENRTIFNTPNPRLMNVSLLRDSKLL
HGQERRGSRMSVRAPSRQPSMASLRPHSPNPSLGSHSESHGSNASAASVR
SNRSNSVAPGKVVHHERHGSAHRQHHPHGHQPKEQPQSPQSQDQSLITNI
TTNPVAESVTVEIIEPGQK*

GH11945.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18410-PA 289 GF18410-PA 64..289 249..469 999 88.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12031-PA 471 GG12031-PA 1..188 1..184 764 82.6 Plus
Dere\GG21164-PA 124 GG21164-PA 51..124 248..321 414 98.6 Plus
Dere\GG12031-PA 471 GG12031-PA 383..471 381..469 383 97.8 Plus
Dere\GG12031-PA 471 GG12031-PA 193..261 316..384 340 94.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:59:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14008-PA 468 GH14008-PA 159..459 129..469 1152 67.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:41
Subject Length Description Subject Range Query Range Score Percent Strand
jus-PB 469 CG14509-PB 1..469 1..469 2511 100 Plus
jus-PD 472 CG14509-PD 1..472 1..469 2497 99.4 Plus
jus-PC 509 CG14509-PC 1..428 1..428 2088 91.8 Plus
jus-PE 506 CG14509-PE 1..425 1..428 2082 92.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:59:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13608-PA 670 GL13608-PA 207..462 130..384 1312 91.4 Plus
Dper\GL13608-PA 670 GL13608-PA 546..670 364..469 225 56 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13040-PB 550 GA13040-PB 1..550 1..469 1695 66.7 Plus
Dpse\GA13040-PC 569 GA13040-PC 1..458 1..384 1472 66.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12256-PA 579 GM12256-PA 1..376 1..384 1985 96.9 Plus
Dsec\GM12256-PA 579 GM12256-PA 484..579 374..469 385 91.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17939-PA 465 GD17939-PA 1..465 1..469 2472 98.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14233-PA 519 GJ14233-PA 168..453 145..428 1181 78.2 Plus
Dvir\GJ14234-PA 71 GJ14234-PA 15..71 407..469 183 68.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22496-PA 545 GK22496-PA 211..545 138..469 1555 89.9 Plus
Dwil\GK20235-PA 250 GK20235-PA 32..180 236..384 806 97.3 Plus
Dwil\GK22496-PA 545 GK22496-PA 1..97 1..78 170 52.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10469-PA 600 GE10469-PA 1..387 1..384 1879 94.6 Plus
Dyak\GE10469-PA 600 GE10469-PA 512..600 381..469 378 96.6 Plus

GH11945.hyp Sequence

Translation from 268 to 1677

> GH11945.hyp
MRLDGALEPRPRQGAATIKGRQPLRRETREPCETQQQQPADEDDEATDAE
CLTTNSSSSSSSTSSTSSNNCQANLVCNPKRTTSATPTPRKTTGGRGNTR
HTILMAPNVGHQRKSLGLRLPMKQGRSRRRMMGAEWGWERLNGLLLCLIS
VIALLPPLTLGDDGDNFFAVNAFSAGPETTTPEFDYASRGQKKFGDKCDN
TLECGFPGSICDPKKKSCQCTEDLPVTNHYDKCGKEAAVNESCFFNEQCE
MRYFQTECRDGRCICRFEMSPIWGKDGSVECKGRQDKRGPETYIDPAMIG
VLVGMALMFVIICVVLRLFSQARWRENRTIFNTPNPRLMNVSLLRDSKLL
HGQERRGSRMSVRAPSRQPSMASLRPHSPNPSLGSHSESHGSNASAASVR
SNRSNSVAPGKVVHHERHGSAHRQHHPHGHQPKEQPQSPQSQDQSLITNI
TTNPVAESVTVEIIEPGQK*

GH11945.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:26:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG14509-PB 469 CG14509-PB 1..469 1..469 2511 100 Plus
CG14509-PD 472 CG14509-PD 1..472 1..469 2497 99.4 Plus
CG14509-PC 509 CG14509-PC 1..428 1..428 2088 91.8 Plus
CG14509-PE 506 CG14509-PE 1..425 1..428 2082 92.1 Plus