Clone GH11957 Report

Search the DGRC for GH11957

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:119
Well:57
Vector:pOT2
Associated Gene/TranscriptCG11796-RA
Protein status:GH11957.pep: gold
Preliminary Size:1381
Sequenced Size:1302

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11796 2004-03-05 Blastp of sequenced clone
CG11796 2008-04-29 Release 5.5 accounting
CG11796 2008-08-15 Release 5.9 accounting
CG11796 2008-12-18 5.12 accounting

Clone Sequence Records

GH11957.complete Sequence

1302 bp (1302 high quality bases) assembled on 2004-03-05

GenBank Submission: BT012317

> GH11957.complete
AGATCGTGTAAGATCGACGGAACGAAGAAATCTATATCGCGTGCGAGGAG
AGGATTTGCATAAATTGAGTCTGAGTGATAATGACCAGCTATACTGACAA
AGGAACCAAACCTGAAGCCGGCAAATTTCTAAGCTTTGATCACTTAACCT
TCTACGTTGGCAACGCCAAGCAGGCGGCCAGCTACTATACCACTCGACTG
GGCTTCGAACCACTTGGCTATCAGGGATTAGAGACCGGGGAGCGACGCTT
CGCCAAGCATGCCGTCCGCCAGAACAAGATCGTCTTTGTGTTCGTCTCCG
CCTACACGCCGGATGACGAGGAGCATGGACTCCACCTGATGCGCCACGGC
GACGGTGTCAAGGATGTAGCCTTCGAAGTGGAGGATTTGAATGCCATTTT
CACACTGGCCGTGTCCCGTGGGGCCGAAGTGGTCCGCGACATCTGGGAGG
AGAGCGATGATCAGGGATTCGTGAGATTCGCTACCATCAAGACGTACGGC
GACACTACCCACACTTTCGTGGAGCGCAATGGGTACGCTGGAGATTTCCT
GCCTGGATTCCAGCGGTCGCCCAAAGATGTCCTTCTAAACGGATTGCCCT
CCACCAAGCTGAACTTCATTGATCACGTGGTGGGCAACCAGCCGGATCTG
CAGATGGAGAGCGTGGCCTCCTGGTACGAGAGAATCCTGCAGTTCCACCG
CTTCTGGTCCGTGGATGACTCGCAGATTCACACGGAATACTCCGCCCTGC
GGTCCATCGTGATGGCAAACTACGAGGAGACGGTGAAGATGCCGATCAAT
GAGCCAGCCAATGGGAAAAAGAAGTCACAGATCCAGGAGTACGTGGAGTA
CTACGGCGGCGGTGGTGTCCAGCACATTGCTCTTAATACGGATGACATTA
TCGAGGCGGTGAGCAACCTAAAGGCTCGAGGAACCGAGTTCCTGACCATC
CCATCCTCGTACTACGAGATCCTTCAGGAGCAGCTCTCGCACAGCCGCAC
CAAGATCAAGGAGGACATGGAGGTCTTGAAGAAGTTGAACATTTTGATTG
ACTTCGACGAGAACGGATATCTGCTGCAGATCTTCACAAAGAACTGCCAG
GATAGACCGACCCTCTTCCTGGAAGTTATCCAACGCTACAATCACAATGG
ATTTGGCGCTGGCAACTTTAAGTCCTTGTTCACGGCCATTGAAATTGAAC
AAGCCAAGCGAGGAAACTTGTGAATCAAATGTGATCAAATTGAGAACTAA
CAAAATCAATAATAAATGAAATGGTCTAAACTGAAAAAAAAAAAAAAAAA
AA

GH11957.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:03:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG11796-RA 1301 CG11796-RA 15..1301 1..1287 6435 100 Plus
CG11796-RB 1516 CG11796-RB 312..1516 83..1287 6025 100 Plus
CG5872-RA 2012 CG5872-RA 1694..1833 1288..1149 700 100 Minus
CG5872-RA 2012 CG5872-RA 1897..2012 1149..1034 580 100 Minus
CG11796-RB 1516 CG11796-RB 13..95 1..83 415 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:35:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20427373..20428028 1149..494 3280 100 Minus
chr3L 24539361 chr3L 20428086..20428469 494..111 1920 100 Minus
chr3L 24539361 chr3L 20427175..20427309 1283..1149 675 100 Minus
chr3L 24539361 chr3L 20428781..20428863 83..1 415 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:45:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:35:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20438364..20439019 1149..494 3280 100 Minus
3L 28110227 3L 20439077..20439460 494..111 1920 100 Minus
3L 28110227 3L 20438161..20438300 1288..1149 700 100 Minus
3L 28110227 3L 20439772..20439854 83..1 415 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:51:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20431464..20432119 1149..494 3280 100 Minus
3L 28103327 3L 20432177..20432560 494..111 1920 100 Minus
3L 28103327 3L 20431261..20431400 1288..1149 700 100 Minus
3L 28103327 3L 20432872..20432954 83..1 415 100 Minus
3L 28103327 3L 20432628..20432655 110..83 140 100 Minus
Blast to na_te.dros performed on 2019-03-15 21:35:25 has no hits.

GH11957.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:36:05 Download gff for GH11957.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20427175..20427309 1149..1283 100 <- Minus
chr3L 20427374..20428027 495..1148 100 <- Minus
chr3L 20428086..20428469 111..494 100 <- Minus
chr3L 20428537..20428563 84..110 100 <- Minus
chr3L 20428781..20428863 1..83 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:36:38 Download gff for GH11957.complete
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 1..1143 81..1223 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:39:20 Download gff for GH11957.complete
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 1..1143 81..1223 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:53:13 Download gff for GH11957.complete
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 1..1143 81..1223 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:23:04 Download gff for GH11957.complete
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 1..1143 81..1223 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:58:11 Download gff for GH11957.complete
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 1..1143 81..1223 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:47:37 Download gff for GH11957.complete
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 15..1297 1..1283 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:39:20 Download gff for GH11957.complete
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 15..1297 1..1283 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:53:13 Download gff for GH11957.complete
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 19..1301 1..1283 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:23:04 Download gff for GH11957.complete
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 15..1297 1..1283 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:11 Download gff for GH11957.complete
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 19..1301 1..1283 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:36:05 Download gff for GH11957.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20438166..20438300 1149..1283 100 <- Minus
3L 20438365..20439018 495..1148 100 <- Minus
3L 20439077..20439460 111..494 100 <- Minus
3L 20439528..20439554 84..110 100 <- Minus
3L 20439772..20439854 1..83 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:36:05 Download gff for GH11957.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20438166..20438300 1149..1283 100 <- Minus
3L 20438365..20439018 495..1148 100 <- Minus
3L 20439077..20439460 111..494 100 <- Minus
3L 20439528..20439554 84..110 100 <- Minus
3L 20439772..20439854 1..83 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:36:05 Download gff for GH11957.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20438166..20438300 1149..1283 100 <- Minus
3L 20438365..20439018 495..1148 100 <- Minus
3L 20439077..20439460 111..494 100 <- Minus
3L 20439528..20439554 84..110 100 <- Minus
3L 20439772..20439854 1..83 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:53:13 Download gff for GH11957.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20431266..20431400 1149..1283 100 <- Minus
arm_3L 20431465..20432118 495..1148 100 <- Minus
arm_3L 20432177..20432560 111..494 100 <- Minus
arm_3L 20432628..20432654 84..110 100 <- Minus
arm_3L 20432872..20432954 1..83 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:00:31 Download gff for GH11957.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20431465..20432118 495..1148 100 <- Minus
3L 20432177..20432560 111..494 100 <- Minus
3L 20432628..20432654 84..110 100 <- Minus
3L 20432872..20432954 1..83 100   Minus
3L 20431266..20431400 1149..1283 100 <- Minus

GH11957.pep Sequence

Translation from 80 to 1222

> GH11957.pep
MTSYTDKGTKPEAGKFLSFDHLTFYVGNAKQAASYYTTRLGFEPLGYQGL
ETGERRFAKHAVRQNKIVFVFVSAYTPDDEEHGLHLMRHGDGVKDVAFEV
EDLNAIFTLAVSRGAEVVRDIWEESDDQGFVRFATIKTYGDTTHTFVERN
GYAGDFLPGFQRSPKDVLLNGLPSTKLNFIDHVVGNQPDLQMESVASWYE
RILQFHRFWSVDDSQIHTEYSALRSIVMANYEETVKMPINEPANGKKKSQ
IQEYVEYYGGGGVQHIALNTDDIIEAVSNLKARGTEFLTIPSSYYEILQE
QLSHSRTKIKEDMEVLKKLNILIDFDENGYLLQIFTKNCQDRPTLFLEVI
QRYNHNGFGAGNFKSLFTAIEIEQAKRGNL*

GH11957.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:36:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24132-PA 402 GF24132-PA 24..402 2..380 1963 95.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13309-PA 380 GG13309-PA 1..380 1..380 2035 99.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17018-PA 387 GH17018-PA 9..387 2..380 1914 92.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:30:04
Subject Length Description Subject Range Query Range Score Percent Strand
Hpd-PA 380 CG11796-PA 1..380 1..380 1989 100 Plus
Hpd-PB 294 CG11796-PB 1..294 87..380 1532 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:36:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11911-PA 402 GI11911-PA 23..402 1..380 1916 93.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:36:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12777-PA 350 GL12777-PA 2..350 32..380 1796 94.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11203-PA 381 GA11203-PA 3..381 2..380 1952 95 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22213-PA 380 GM22213-PA 1..380 1..380 2035 99.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12185-PA 380 GD12185-PA 1..380 1..380 2034 99.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13785-PA 380 GJ13785-PA 1..380 1..380 1941 94.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:36:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12342-PA 380 GK12342-PA 1..380 1..380 1918 92.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22742-PA 380 GE22742-PA 1..380 1..380 2032 99.2 Plus

GH11957.hyp Sequence

Translation from 80 to 1222

> GH11957.hyp
MTSYTDKGTKPEAGKFLSFDHLTFYVGNAKQAASYYTTRLGFEPLGYQGL
ETGERRFAKHAVRQNKIVFVFVSAYTPDDEEHGLHLMRHGDGVKDVAFEV
EDLNAIFTLAVSRGAEVVRDIWEESDDQGFVRFATIKTYGDTTHTFVERN
GYAGDFLPGFQRSPKDVLLNGLPSTKLNFIDHVVGNQPDLQMESVASWYE
RILQFHRFWSVDDSQIHTEYSALRSIVMANYEETVKMPINEPANGKKKSQ
IQEYVEYYGGGGVQHIALNTDDIIEAVSNLKARGTEFLTIPSSYYEILQE
QLSHSRTKIKEDMEVLKKLNILIDFDENGYLLQIFTKNCQDRPTLFLEVI
QRYNHNGFGAGNFKSLFTAIEIEQAKRGNL*

GH11957.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG11796-PA 380 CG11796-PA 1..380 1..380 1989 100 Plus
CG11796-PB 294 CG11796-PB 1..294 87..380 1532 100 Plus