Clone GH11963 Report

Search the DGRC for GH11963

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:119
Well:63
Vector:pOT2
Associated Gene/TranscriptFucT6-RA
Protein status:GH11963.pep: gold
Preliminary Size:2771
Sequenced Size:2764

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2448 2001-01-01 Release 2 assignment
CG2448 2001-07-04 Blastp of sequenced clone
CG2448 2003-01-01 Sim4 clustering to Release 3
FucT6 2008-04-29 Release 5.5 accounting
FucT6 2008-08-15 Release 5.9 accounting
FucT6 2008-12-18 5.12 accounting

Clone Sequence Records

GH11963.complete Sequence

2764 bp (2764 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051451

> GH11963.complete
AAAACACAGAACAGGACGGAAATATATAGAATACTTTTGCACTTAATTTG
ACTTGCCACGACTACCTGGCCAACTCGATCGGCGATATAGACCACCGGCC
CATCAGTCAATTTCATTCTGGCATTGATCGAGCTCCGTGAAACTTGCATT
CCAGCTGGCCACCATCCCATACGTCCATATATCCTTTATAAAATATCTAT
AAATCGAAGAGGAATCCTAGCCCCGCCGACCATGTCATTGGATCGCCTTG
GTTGCTGGCCGGATCGGAGTTAATTGAGACTATGCACCGGAATCGAAACA
GCTCCGCATTGAAGTACACGTAGAGAGCATTTCCGAGTCCGCCCCCGTTC
GGAGCCCCGTTCCTTGATCCCCTGGAAGATCGATTGTGGTCCCGGCGAGC
GGAGGGCAGAATCCAGAGGAGGAGGAGGAGCAGGAGCAGCAGTGGAAACG
CCGGCATGCTGCTGGTGCGTCAGCTATTCGGGGCTTCGGCCAACTCCTGG
GCACGCGCCCTCATCATATTCGTACTGGCCTGGATCGGGTTGGTCTACGT
GTTCGTGGTCAAGCTGACCAATACTCAGGGCCAGCAGGCGGCCGGGGAGA
GTGAGCTGAACGCCCGTCGCATATCACAGGCGCTCCAGATGCTGGAGCAC
ACGAGACAGCGCAATGAGGAGCTTAAACAGCTCATCGACGAGTTGATGAG
TGACCAACTGGACAAGCAGAGCGCAATGAAACTGGTGCAAAGGCTGGAGA
ACGATGCGCTAAATCCAAAGCTGGCGCCCGAGGTCGCCGGCCCGGAACCA
GAATCCATGTTCGAGTCCGCCCCCGCTGATCTGCGCGGTTGGAATAATGT
GGCCGAGGGAGCGCCCAATGATCTGGAGGCCGGTGTTCCGGATCATGGCG
AATTCGAGCCCAGCCTAGAGTACGAGTTCACGCGCAGACGCATCCAGACG
AACATCGGTGAGATCTGGAATTTCTTCAGCAGTGAACTGGGCAAAGTGCG
TAAGGCAGTGGCCGCCGGCCATGCGAGTGCCGATTTGGAGGAGTCCATTA
ACCAGGTGCTGCTCCAAGGCGCCGAGCACAAGCGCTCCCTGCTGAGCGAT
ATGGAGCGGATGCGTCAGTCCGATGGCTACGAGGCCTGGCGACACAAGGA
GGCACGGGATTTGAGCGATTTGGTACAGCGGCGCCTGCACCATCTACAGA
ATCCCAGTGATTGCCAGAATGCTCGCAAGCTGGTCTGTAAGCTCAACAAG
GGCTGTGGCTACGGCTGCCAACTGCACCATGTGGTGTATTGCTTTATAGT
GGCCTACGCCACCGAGCGGACGCTCATCTTAAAATCCCGCGGATGGCGGT
ATCACAAGGGCGGCTGGGAGGAGGTGTTCCAACCGGTGTCCAACAGCTGC
CATGATGCGGGCACCGCCAACACATACAATTGGCCGGGCAAGCCGAACAC
CCAGGTGCTGGTGTTGCCCATCATTGACTCGCTGATGCCGAGACCGCCGT
ACCTGCCGCTCGCCGTTCCCGAGGATCTGGCGCCGAGACTTAAGCGTCTG
CATGGAGACCCCATCGTTTGGTGGGTGGGTCAGTTCCTTAAGTATTTGCT
CCGACCGCAACCAACGACGCGGGATTTTCTTACCTCTGGCATGCGCAATT
TGGGTTGGGAGCGTCCCATTGTTGGCGTTCATGTCCGTCGCACGGACAAA
GTGGGCACAGAAGCGGCCTGCCACAGTGTGGAGGAGTATATGACCTATGT
CGAGGACTACTACCGCACGCTGGAGGTAAACGGCAGCACTGTGGCTCGCC
GGATTTTCCTCGCATCGGATGATGCCCAGGTTATTGAGGAGGCGCGCCGA
AAGTACCCGCAGTACCAGATCATTGGTGATCCGGAGGTGGCGCGCATGGC
GTCCGTATCCACACGATACACGGACACCGCCCTGAACGGGATCATTCTGG
ATATCCACCTGCTTTCCATGTCCGATCATCTGGTGTGCACCTTCTCGTCG
CAGGTGTGTCGCGTGGCCTACGAGATAATGCAGACGATGTATCCGGATGC
AGCGCATCGGTTCAAGTCGCTGGACGACATATACTACTACGGTGGCCAGA
ATGCGCACAATCGCCGCGTCGTTATCGCCCACAAGCCGCGCACGCACGAG
GATCTACAGCTGCGTGTTGGTGACCTCGTCTCGGTGGCTGGTAACCATTG
GGATGGCAATTCCAAGGGCAAGAATACCCGCACCAACCAGGGCGGCCTAT
TCCCCTCGTTCAAGGTGGAGGAGAAGGTGGACACCGCCAAGCTGCCTCTC
TATGCGGGCATTTAGTTAGTTGCTCACATCACTACATTCTCGGCCATGTT
GTTGATCGATCTGTAAATCCTATCTGCCGCATTCCACCTGGAATTTCCAT
GGTGCATATCGATTCGGCTCGGATCAGCATCACCAGAATCTATCGAATGT
CCAGAATCTCAAATGAAATCTCGCTCTTTCTGTACTTGTCCATCAATATG
TGACTATTTCTTCATGTTCTCGTCTGCGCACTTTTACGCTCTGATTTCGA
TTCCGAATCTTATTCTTATTCTTATTCTGCATTTGTACAAGTCTTTTAAT
AAGATGTAAGTCGAAAGCCGAAGAAATTATGTTGACAAGAATATACATAA
AGATATTTATATATATAAATAAATTATATATAGAAGTGCATGTAGTTTCA
CTAAGCGCAATATAGTCTATCACCTGTAAAATAGTTGAAAGAAAACAAAA
AAAAAAAAAAAAAA

GH11963.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:00:09
Subject Length Description Subject Range Query Range Score Percent Strand
FucT6-RA 2927 FucT6-RA 96..2859 1..2764 13775 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:56:23
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 11597784..11598855 2746..1675 5315 99.7 Minus
chrX 22417052 chrX 11600412..11601117 700..1 3270 97.9 Minus
chrX 22417052 chrX 11599453..11600005 1251..699 2765 100 Minus
chrX 22417052 chrX 11598920..11599346 1675..1249 2135 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:45:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:56:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11706557..11707646 2764..1675 5405 99.7 Minus
X 23542271 X 11709203..11709902 700..1 3500 100 Minus
X 23542271 X 11708244..11708796 1251..699 2765 100 Minus
X 23542271 X 11707711..11708137 1675..1249 2135 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:18:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 11714655..11715744 2764..1675 5405 99.7 Minus
X 23527363 X 11717301..11718000 700..1 3500 100 Minus
X 23527363 X 11716342..11716894 1251..699 2765 100 Minus
X 23527363 X 11715809..11716235 1675..1249 2135 100 Minus
Blast to na_te.dros performed on 2019-03-15 11:56:21 has no hits.

GH11963.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:57:03 Download gff for GH11963.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 11597789..11598854 1676..2741 95 <- Minus
chrX 11598920..11599344 1251..1675 100 <- Minus
chrX 11599454..11600003 701..1250 100 <- Minus
chrX 11600412..11601117 1..700 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:36:39 Download gff for GH11963.complete
Subject Subject Range Query Range Percent Splice Strand
FucT6-RA 1..1860 456..2315 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:59:57 Download gff for GH11963.complete
Subject Subject Range Query Range Percent Splice Strand
FucT6-RA 1..1860 456..2315 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:35:07 Download gff for GH11963.complete
Subject Subject Range Query Range Percent Splice Strand
FucT6-RA 1..1860 456..2315 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:43:51 Download gff for GH11963.complete
Subject Subject Range Query Range Percent Splice Strand
FucT6-RA 1..1860 456..2315 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:46:47 Download gff for GH11963.complete
Subject Subject Range Query Range Percent Splice Strand
FucT6-RA 1..1860 456..2315 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:15:13 Download gff for GH11963.complete
Subject Subject Range Query Range Percent Splice Strand
FucT6-RA 49..2794 1..2746 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:59:56 Download gff for GH11963.complete
Subject Subject Range Query Range Percent Splice Strand
FucT6-RA 49..2794 1..2746 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:35:07 Download gff for GH11963.complete
Subject Subject Range Query Range Percent Splice Strand
FucT6-RA 50..2795 1..2746 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:43:51 Download gff for GH11963.complete
Subject Subject Range Query Range Percent Splice Strand
FucT6-RA 49..2794 1..2746 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:46:47 Download gff for GH11963.complete
Subject Subject Range Query Range Percent Splice Strand
FucT6-RA 50..2795 1..2746 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:57:03 Download gff for GH11963.complete
Subject Subject Range Query Range Percent Splice Strand
X 11706575..11707645 1676..2746 100 <- Minus
X 11707711..11708135 1251..1675 100 <- Minus
X 11708245..11708794 701..1250 100 <- Minus
X 11709203..11709902 1..700 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:57:03 Download gff for GH11963.complete
Subject Subject Range Query Range Percent Splice Strand
X 11706575..11707645 1676..2746 100 <- Minus
X 11707711..11708135 1251..1675 100 <- Minus
X 11708245..11708794 701..1250 100 <- Minus
X 11709203..11709902 1..700 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:57:03 Download gff for GH11963.complete
Subject Subject Range Query Range Percent Splice Strand
X 11706575..11707645 1676..2746 100 <- Minus
X 11707711..11708135 1251..1675 100 <- Minus
X 11708245..11708794 701..1250 100 <- Minus
X 11709203..11709902 1..700 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:35:07 Download gff for GH11963.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11600608..11601678 1676..2746 100 <- Minus
arm_X 11601744..11602168 1251..1675 100 <- Minus
arm_X 11602278..11602827 701..1250 100 <- Minus
arm_X 11603236..11603935 1..700 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:26:47 Download gff for GH11963.complete
Subject Subject Range Query Range Percent Splice Strand
X 11714673..11715743 1676..2746 100 <- Minus
X 11715809..11716233 1251..1675 100 <- Minus
X 11716343..11716892 701..1250 100 <- Minus
X 11717301..11718000 1..700 100   Minus

GH11963.pep Sequence

Translation from 455 to 2314

> GH11963.pep
MLLVRQLFGASANSWARALIIFVLAWIGLVYVFVVKLTNTQGQQAAGESE
LNARRISQALQMLEHTRQRNEELKQLIDELMSDQLDKQSAMKLVQRLEND
ALNPKLAPEVAGPEPESMFESAPADLRGWNNVAEGAPNDLEAGVPDHGEF
EPSLEYEFTRRRIQTNIGEIWNFFSSELGKVRKAVAAGHASADLEESINQ
VLLQGAEHKRSLLSDMERMRQSDGYEAWRHKEARDLSDLVQRRLHHLQNP
SDCQNARKLVCKLNKGCGYGCQLHHVVYCFIVAYATERTLILKSRGWRYH
KGGWEEVFQPVSNSCHDAGTANTYNWPGKPNTQVLVLPIIDSLMPRPPYL
PLAVPEDLAPRLKRLHGDPIVWWVGQFLKYLLRPQPTTRDFLTSGMRNLG
WERPIVGVHVRRTDKVGTEAACHSVEEYMTYVEDYYRTLEVNGSTVARRI
FLASDDAQVIEEARRKYPQYQIIGDPEVARMASVSTRYTDTALNGIILDI
HLLSMSDHLVCTFSSQVCRVAYEIMQTMYPDAAHRFKSLDDIYYYGGQNA
HNRRVVIAHKPRTHEDLQLRVGDLVSVAGNHWDGNSKGKNTRTNQGGLFP
SFKVEEKVDTAKLPLYAGI*

GH11963.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:09:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21438-PA 618 GF21438-PA 1..618 1..619 3125 92.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:09:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18841-PA 619 GG18841-PA 1..619 1..619 3321 99 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:09:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24560-PA 628 GH24560-PA 1..628 1..619 2630 78.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
FucT6-PA 619 CG2448-PA 1..619 1..619 3267 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:09:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16320-PA 627 GI16320-PA 1..627 1..619 2679 79.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:09:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15236-PA 330 GL15236-PA 1..330 290..619 1682 91.8 Plus
Dper\GL15235-PA 263 GL15235-PA 1..222 1..216 842 76.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:09:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\FucT6-PA 625 GA15369-PA 1..625 1..619 2920 86.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:09:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13053-PA 619 GM13053-PA 1..619 1..619 3345 99.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:09:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15979-PA 251 GD15979-PA 29..251 397..619 1206 99.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:09:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15660-PA 625 GJ15660-PA 1..625 1..619 2628 79.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:09:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19791-PA 644 GK19791-PA 1..644 1..619 2774 80.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:09:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\FucT6-PA 619 GE17606-PA 1..619 1..619 3315 98.9 Plus

GH11963.hyp Sequence

Translation from 455 to 2314

> GH11963.hyp
MLLVRQLFGASANSWARALIIFVLAWIGLVYVFVVKLTNTQGQQAAGESE
LNARRISQALQMLEHTRQRNEELKQLIDELMSDQLDKQSAMKLVQRLEND
ALNPKLAPEVAGPEPESMFESAPADLRGWNNVAEGAPNDLEAGVPDHGEF
EPSLEYEFTRRRIQTNIGEIWNFFSSELGKVRKAVAAGHASADLEESINQ
VLLQGAEHKRSLLSDMERMRQSDGYEAWRHKEARDLSDLVQRRLHHLQNP
SDCQNARKLVCKLNKGCGYGCQLHHVVYCFIVAYATERTLILKSRGWRYH
KGGWEEVFQPVSNSCHDAGTANTYNWPGKPNTQVLVLPIIDSLMPRPPYL
PLAVPEDLAPRLKRLHGDPIVWWVGQFLKYLLRPQPTTRDFLTSGMRNLG
WERPIVGVHVRRTDKVGTEAACHSVEEYMTYVEDYYRTLEVNGSTVARRI
FLASDDAQVIEEARRKYPQYQIIGDPEVARMASVSTRYTDTALNGIILDI
HLLSMSDHLVCTFSSQVCRVAYEIMQTMYPDAAHRFKSLDDIYYYGGQNA
HNRRVVIAHKPRTHEDLQLRVGDLVSVAGNHWDGNSKGKNTRTNQGGLFP
SFKVEEKVDTAKLPLYAGI*

GH11963.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:26:32
Subject Length Description Subject Range Query Range Score Percent Strand
FucT6-PA 619 CG2448-PA 1..619 1..619 3267 100 Plus