Clone GH11985 Report

Search the DGRC for GH11985

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:119
Well:85
Vector:pOT2
Associated Gene/TranscriptCG14024-RA
Protein status:GH11985.pep: gold
Preliminary Size:2200
Sequenced Size:1787

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14024 2001-01-01 Release 2 assignment
CG14024 2001-07-04 Blastp of sequenced clone
CG14024 2003-01-01 Sim4 clustering to Release 3
CG14024 2008-04-29 Release 5.5 accounting
CG14024 2008-08-15 Release 5.9 accounting
CG14024 2008-12-18 5.12 accounting

Clone Sequence Records

GH11985.complete Sequence

1787 bp (1787 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051453

> GH11985.complete
CCACGAGCAGGACGGCAGAAGCGGAGCAGGCAGCAGGATTCCCCGGAGCC
ACAAGCAACACGTAACAGAGCGGCCCCAGGAGCAGGAGGGGGCTGGCGGA
GAGGCGGGCAGCCGTAGGCTTTCAGTATACACAGGGAGCTCGCCCGAAAA
GCAAAGGATAAATATTTTAACGCCCGCCGCGCTTCAAAAAACCACCGCCC
ATCCGTGGATCATGCAGCGAGCTCGCTGCAGGAATCCCTGGTAGATTCGC
AAGATGCTCATCCGCCTGCGCTATGGAAGACGCCTGCAGACCTATCTGAA
GATAGGCGCCTGTGTCCTGGTCGGCCTGTGCTACTTCGCCTTCCTTTTCC
GCGAATCCCTCAATGCATACGAGCACCGGGAGCGGGCTACGGCCGCGGAA
TTGGAGGCGGAATCGGAGCCATCAAAGCAGCAGCTCAAGCTAAAGCGGCA
GCAGTTGCAGCGCCAGCGGATATTGGCCAAGCAGCAGGAGCAGGGAAAGG
GCATCGCTGGGGGAAATGCCAGTGCAGGCAGCTCATCCTCCCAAGCAGCA
GCTCCTCCGCCGCCGCCGCCGGCTACCACCCTGAATCCCGTGTATGAGTA
CTCCGAGGAGCTGCACAGTCGCACGGAGCGGGAGCTGCAGAGGAGGAGCG
AGCATCTGGCCGCCGTCTGCGATCGGTATAAGCTGCAGGAAAAGTACCCA
CCGAATCCCTGGGAGTTCTTCGTCTCGCCTGGCCACAACAATCTCGTCTG
GTGCAACGTCTTCAAGGCGGCCAGCAGTACGTGGATGTATTACTTTAATA
TATTAGCTGGCTACGATGTGAAGTATCTGCAGCGCACGGAGACGCAGCCA
CTGGAGCTGGCCAGAAAGCGTTTTCCACGCCCGGAACTGGGCGAACTGAT
GGAGCTGCTGCCCAGTGCGCTGTCCTTTCTCTTTGTGCGCGATCCCTTCG
AGCGAATCCTGAGCGCCTATCGCAACAAACTGGAGGGCAACAAGAACACC
TTCTACAAGGCGCTGGGCAACAAGATCGTGCATCGCTACAGGAAGCGTAA
TCTGGGCGGACCCTGGCCGCGATGTGGACCCACCTTCGAGGAGTTCGTCC
GCTTCCTGATCGCCGAGCATGCGGCGGGCAAGAGATTCGACGAGCACTGG
GCACCAGTTTACAGCTTCTGCACGCCCTGCAGCGTTAACTTCACCATCAT
CGGCAAGACGGAGACGTTCCAGAGGGACTCGGAGTTCATCATACGGCAGG
CGGGCCTGGAATCGCTGCTCCTGGGACTGGGCAAGCTGCCGCAGCGGAAG
CAGCGCAAAATTGGCAACCAGGCGCGAAGTGGCGTTAAATCCGAGGCCCT
GGTCGAGCGATACTTCGCCGATCTCGACCGCTCAACGTTGGACCAATTGC
TCAAGATATATCGCATCGATTTCGAGCTCTTTGACTACGACTATCGCAGG
TACTACGATATGGTGCATCCGTGGAGTCTGGAGCAGAGCACTGCCGCATC
CGGAGGGCCGGCAGTCGCATCCACCAGTACGACACCATCGATATCCTCTG
GCCTGGCTGGCCAGTCCACCCAGGGTCAGGCGACGTAGGTGCAGTGGTGT
CAAGGAGTTTGGGATCGATCAGTCGTGAAACAATCTTATCATGTACCTTT
TTACACGAAAACTCAGACCACAGACAAAGGAAACACTCTCACACGATGAA
AACAGAACCCAACCGAAGCTAACAAATCTACCAAAAAGTTTATGGCCAAA
TCAACGTTTTCCAAAAACGAAAAAAAAAAAAAAAAAA

GH11985.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:36:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG14024-RA 2096 CG14024-RA 32..1818 1..1787 8905 99.8 Plus
CG14024.a 2579 CG14024.a 32..1818 1..1787 8905 99.8 Plus
CG14024.b 2621 CG14024.b 32..1818 1..1787 8905 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:48:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 5311228..5312192 1769..805 4825 100 Minus
chr2L 23010047 chr2L 5312485..5313048 752..189 2820 100 Minus
chr2L 23010047 chr2L 5313778..5313965 188..1 940 100 Minus
chr2L 23010047 chr2L 5312368..5312424 806..750 285 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:45:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:48:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5312111..5313093 1787..805 4885 99.8 Minus
2L 23513712 2L 5313386..5313949 752..189 2820 100 Minus
2L 23513712 2L 5314679..5314866 188..1 940 100 Minus
2L 23513712 2L 5313269..5313325 806..750 285 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5312111..5313093 1787..805 4885 99.7 Minus
2L 23513712 2L 5313386..5313949 752..189 2820 100 Minus
2L 23513712 2L 5314679..5314866 188..1 940 100 Minus
2L 23513712 2L 5313269..5313325 806..750 285 100 Minus
Blast to na_te.dros performed 2019-03-16 00:48:29
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 10363..10463 461..556 115 60.4 Plus

GH11985.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:49:35 Download gff for GH11985.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 5313778..5313965 1..188 100   Minus
chr2L 5311228..5312190 807..1769 100 <- Minus
chr2L 5312368..5312423 751..806 100 <- Minus
chr2L 5312487..5313048 189..750 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:36:44 Download gff for GH11985.complete
Subject Subject Range Query Range Percent Splice Strand
CG14024-RA 1..1335 254..1588 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:27:37 Download gff for GH11985.complete
Subject Subject Range Query Range Percent Splice Strand
CG14024-RA 1..1335 254..1588 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:52:25 Download gff for GH11985.complete
Subject Subject Range Query Range Percent Splice Strand
CG14024-RA 1..1335 254..1588 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:00:53 Download gff for GH11985.complete
Subject Subject Range Query Range Percent Splice Strand
CG14024-RA 1..1335 254..1588 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:13:35 Download gff for GH11985.complete
Subject Subject Range Query Range Percent Splice Strand
CG14024-RA 1..1335 254..1588 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:27:11 Download gff for GH11985.complete
Subject Subject Range Query Range Percent Splice Strand
CG14024-RA 20..1781 1..1762 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:27:36 Download gff for GH11985.complete
Subject Subject Range Query Range Percent Splice Strand
CG14024-RA 20..1781 1..1762 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:52:25 Download gff for GH11985.complete
Subject Subject Range Query Range Percent Splice Strand
CG14024-RA 24..1792 1..1769 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:00:53 Download gff for GH11985.complete
Subject Subject Range Query Range Percent Splice Strand
CG14024-RA 20..1781 1..1762 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:13:35 Download gff for GH11985.complete
Subject Subject Range Query Range Percent Splice Strand
CG14024-RA 30..1798 1..1769 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:49:35 Download gff for GH11985.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5312129..5313091 807..1769 100 <- Minus
2L 5313269..5313324 751..806 100 <- Minus
2L 5313388..5313949 189..750 100 <- Minus
2L 5314679..5314866 1..188 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:49:35 Download gff for GH11985.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5312129..5313091 807..1769 100 <- Minus
2L 5313269..5313324 751..806 100 <- Minus
2L 5313388..5313949 189..750 100 <- Minus
2L 5314679..5314866 1..188 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:49:35 Download gff for GH11985.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5312129..5313091 807..1769 100 <- Minus
2L 5313269..5313324 751..806 100 <- Minus
2L 5313388..5313949 189..750 100 <- Minus
2L 5314679..5314866 1..188 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:52:25 Download gff for GH11985.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5312129..5313091 807..1769 100 <- Minus
arm_2L 5313269..5313324 751..806 100 <- Minus
arm_2L 5313388..5313949 189..750 100 <- Minus
arm_2L 5314679..5314866 1..188 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:38:45 Download gff for GH11985.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5314679..5314866 1..188 100   Minus
2L 5312129..5313091 807..1769 100 <- Minus
2L 5313269..5313324 751..806 100 <- Minus
2L 5313388..5313949 189..750 100 <- Minus

GH11985.hyp Sequence

Translation from 253 to 1587

> GH11985.hyp
MLIRLRYGRRLQTYLKIGACVLVGLCYFAFLFRESLNAYEHRERATAAEL
EAESEPSKQQLKLKRQQLQRQRILAKQQEQGKGIAGGNASAGSSSSQAAA
PPPPPPATTLNPVYEYSEELHSRTERELQRRSEHLAAVCDRYKLQEKYPP
NPWEFFVSPGHNNLVWCNVFKAASSTWMYYFNILAGYDVKYLQRTETQPL
ELARKRFPRPELGELMELLPSALSFLFVRDPFERILSAYRNKLEGNKNTF
YKALGNKIVHRYRKRNLGGPWPRCGPTFEEFVRFLIAEHAAGKRFDEHWA
PVYSFCTPCSVNFTIIGKTETFQRDSEFIIRQAGLESLLLGLGKLPQRKQ
RKIGNQARSGVKSEALVERYFADLDRSTLDQLLKIYRIDFELFDYDYRRY
YDMVHPWSLEQSTAASGGPAVASTSTTPSISSGLAGQSTQGQAT*

GH11985.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:27:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG14024-PB 444 CG14024-PB 1..444 1..444 2330 100 Plus
CG14024-PA 444 CG14024-PA 1..444 1..444 2330 100 Plus
CG13937-PH 426 CG13937-PH 39..415 40..406 495 33.2 Plus
CG13937-PI 363 CG13937-PI 73..352 123..406 489 37.7 Plus
CG13937-PE 363 CG13937-PE 73..352 123..406 489 37.7 Plus

GH11985.pep Sequence

Translation from 253 to 1587

> GH11985.pep
MLIRLRYGRRLQTYLKIGACVLVGLCYFAFLFRESLNAYEHRERATAAEL
EAESEPSKQQLKLKRQQLQRQRILAKQQEQGKGIAGGNASAGSSSSQAAA
PPPPPPATTLNPVYEYSEELHSRTERELQRRSEHLAAVCDRYKLQEKYPP
NPWEFFVSPGHNNLVWCNVFKAASSTWMYYFNILAGYDVKYLQRTETQPL
ELARKRFPRPELGELMELLPSALSFLFVRDPFERILSAYRNKLEGNKNTF
YKALGNKIVHRYRKRNLGGPWPRCGPTFEEFVRFLIAEHAAGKRFDEHWA
PVYSFCTPCSVNFTIIGKTETFQRDSEFIIRQAGLESLLLGLGKLPQRKQ
RKIGNQARSGVKSEALVERYFADLDRSTLDQLLKIYRIDFELFDYDYRRY
YDMVHPWSLEQSTAASGGPAVASTSTTPSISSGLAGQSTQGQAT*

GH11985.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:06:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15517-PA 449 GF15517-PA 1..449 1..444 1771 84.5 Plus
Dana\GF24951-PA 442 GF24951-PA 152..431 123..406 487 37.7 Plus
Dana\GF14777-PA 370 GF14777-PA 196..359 225..395 216 32 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:06:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24311-PA 443 GG24311-PA 1..443 1..444 2277 96.2 Plus
Dere\GG14549-PA 433 GG14549-PA 116..422 91..406 497 37.2 Plus
Dere\GG21068-PA 561 GG21068-PA 263..550 107..395 244 26.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13538-PA 464 GH13538-PA 1..421 1..417 1634 78.7 Plus
Dgri\GH15296-PA 441 GH15296-PA 127..441 94..418 479 35.5 Plus
Dgri\GH13107-PA 327 GH13107-PA 77..316 154..395 226 28.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG14024-PB 444 CG14024-PB 1..444 1..444 2330 100 Plus
CG14024-PA 444 CG14024-PA 1..444 1..444 2330 100 Plus
CG13937-PH 426 CG13937-PH 39..415 40..406 495 33.2 Plus
CG13937-PG 431 CG13937-PG 11..420 9..406 493 32.6 Plus
CG13937-PF 431 CG13937-PF 11..420 9..406 493 32.6 Plus
CG13937-PI 363 CG13937-PI 73..352 123..406 489 37.7 Plus
CG13937-PE 363 CG13937-PE 73..352 123..406 489 37.7 Plus
CG13937-PD 363 CG13937-PD 73..352 123..406 489 37.7 Plus
CG31743-PB 329 CG31743-PB 43..318 115..395 242 25.6 Plus
CG31743-PA 329 CG31743-PA 43..318 115..395 242 25.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:06:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10575-PA 438 GI10575-PA 1..435 1..435 1734 76.9 Plus
Dmoj\GI12007-PA 432 GI12007-PA 127..415 103..400 469 35.7 Plus
Dmoj\GI22530-PA 329 GI22530-PA 50..318 130..395 229 26.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:07:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18559-PA 501 GL18559-PA 1..410 1..412 1815 87.7 Plus
Dper\GL24817-PA 425 GL24817-PA 133..421 123..420 507 36.9 Plus
Dper\GL14199-PA 329 GL14199-PA 43..318 115..395 237 26.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:07:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12707-PA 447 GA12707-PA 1..409 1..411 1751 87.9 Plus
Dpse\GA12641-PA 437 GA12641-PA 145..433 123..420 506 36.9 Plus
Dpse\GA16441-PA 329 GA16441-PA 43..318 115..395 237 26.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18029-PA 443 GM18029-PA 1..443 1..444 2342 98.9 Plus
Dsec\GM14158-PA 430 GM14158-PA 113..419 91..406 494 36.9 Plus
Dsec\GM17218-PA 329 GM17218-PA 43..318 115..395 235 25.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22657-PA 443 GD22657-PA 1..443 1..444 2345 98.9 Plus
Dsim\GD13428-PA 333 GD13428-PA 115..322 191..406 333 36.1 Plus
Dsim\GD24092-PA 309 GD24092-PA 43..296 115..359 214 25.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:07:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21781-PA 427 GJ21781-PA 1..418 1..432 1653 72.8 Plus
Dvir\GJ13277-PA 428 GJ13277-PA 117..411 108..400 477 35.5 Plus
Dvir\GJ23046-PA 327 GJ23046-PA 41..316 115..395 223 26.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:07:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24847-PA 446 GK24847-PA 1..438 1..436 1706 77 Plus
Dwil\GK19720-PA 419 GK19720-PA 108..410 96..406 497 36.9 Plus
Dwil\GK18242-PA 333 GK18242-PA 44..322 115..395 224 24.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:07:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19005-PA 442 GE19005-PA 1..442 1..444 2300 97.1 Plus
Dyak\GE20904-PA 433 GE20904-PA 116..422 91..406 492 36.9 Plus
Dyak\GE22857-PA 203 GE22857-PA 8..192 161..406 233 29.8 Plus
Dyak\GE12777-PA 329 GE12777-PA 43..318 115..395 233 25.6 Plus
Dyak\GE22861-PA 211 GE22861-PA 88..200 276..406 162 29 Plus