Clone GH12014 Report

Search the DGRC for GH12014

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:120
Well:14
Vector:pOT2
Associated Gene/TranscriptCG4198-RA
Protein status:GH12014.pep: gold
Preliminary Size:1880
Sequenced Size:1906

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4198 2001-01-01 Release 2 assignment
CG4198 2001-09-19 Blastp of sequenced clone
CG4198 2003-01-01 Sim4 clustering to Release 3
CG4198 2008-04-29 Release 5.5 accounting
CG4198 2008-08-15 Release 5.9 accounting
CG4198 2008-12-18 5.12 accounting

Clone Sequence Records

GH12014.complete Sequence

1906 bp (1906 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058344

> GH12014.complete
CACACACGAAAAACAAAAAATCCCAAACATTCCGCAGCACAAATTCAATC
AAATCCAAAACGCACATTTCGGTCGCATCCAAATTGTACGGATTTCGTTA
GTAAATAAAAATCAAATTTCGTGTAAATCCAATCCATAATCCGTGGTAGA
GTAGAAACCACACCATCATGTCGTATCAGATCAAATCGACGCCCTACTTT
CGTCGCATGTTCAACGAGAGCAAGAAGAATGGCCAACTGCAGCGTCTGCG
TGATGAGTACGAGCGCATCCAGGAGTTCAACGATCGCACCATCGAAATGA
AGATGCGACAGGTGCGATTAAAGCGGCTATTTCGCGAGATCGAGGTAATT
AAGGTGGCTGGCGGGGCGGCCGGTGGCGCCAGCGGTGGCGGCACATCGAC
GGCATCATCGCCATCGAATGTTGACCAATCGTTTGGTTTAGCCGGCGGAC
GCGTTACCCGCCGGAGACGGCAACAGGCACACGGTGCTATCACGCTGGCT
AGCAGCACGCCCCAGCAGCGGATGCACAAACAGCGCATAGAGACGCTGGC
ACGCGCACGCCAACTGGGCCAGGAGATCTCGCGTCGGAATGGCCTAATGG
CCGAGGCCGGCACCGGCGGTTTCCTGCGCAGCGAACTCCGGATGACGGCC
AAGCTGCAGGCGGCGAACGATGCACGCCGGGCGGCCGTGGAGCGTCGCGA
CTTGGCCGCCAAGCGCATCTCCTATGGCAACGATCAGTCGCGACAGAATA
TCCAACGCATGCTCATCCAACGCCAGCGCAGACATGAACAGCAGCAAGCG
TTGGCGGCGACAGTAGCATCACCGGCGGCACCGTCATCCAATTCCTACCA
GGTGTCCATAGCGCAGCAGCCGGTCACAAGCAGGCCCAGGCATGAATACA
CGGACAATTGCCAACAACAGCAGGAACTGCTGGCGGTGACCAGTGAGCGA
TCGACGGAGCAGGGCGATCATTTGCAGATGGAATGCGAGGGGCAGTCGTA
CTCGGAGCAAAGCTTCCATTCGAACGACTGTCTGGCGCAATCGATGGACG
AGGATCTGGATGGTGAGGAGGAGCTGGAATACACACGCCATCGGCGTGAT
GGCGACGCGGATGAGGAGCCGGAGCGGCAGTCCTGCCTGGTGACGCTGAA
CAAGGAAAGATCCACATTGGCAGCCACATCACCGCTGGATATGCGTCGAG
TCAAAAGCTCCATTGATTCGTATCGAAAGACGCACCTATCTCCGCTGGCC
AGCGGCAGCAATTGGGTTCGGGTTGTTGGTGGCGCCCAATCGTCCACCAT
TGGATCGCATCAGCCAAGTGGAACGGTGCCGCCGCCGCTAAACGATGAAC
TGCAGCTGGATTCGCAGTCCAATTCGAGTAGGTGGCATGAGGTCTCAATG
ATGCTGTCGTGGTTCGGCGCCGCTTCCGACATCCCAACCGACTATGCCGA
TGCTCCGCCACCCGAGGTGCCCAGTCACTACGATTGCGATTCCATTAGCA
ATGCGGACGATATGCCAACGCCAACTGTGTGCCGTCGACAGCGCATGTTC
GCCGAGCAGCCGAGTGATGCTGCCACACAGGCGCAGGAGGAGCCCTTCTA
GCCAGCCGACGAGCGGCAGACGCACTGCAGCACACATCTATTTTTTTTAC
TGCAATTCGGTATGGAAATCCAAACCATCCAACCAACCAACCAGGCAAGT
CTGCAGCGCCTGCAAAGTTCACTTATTTGGCATGCTACGCTAGTTTTGGC
TTAGAATTCCCGGCCCATCCTGTCCAGAAGTTGTGCACGTGCACTTGGCT
GGCAACCTTTTCGCATCTTTATTTGGTAATAAAATTATGGGTATGGTATT
ACATTTCACAAATAATAATAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAA
AAAAAA

GH12014.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:23:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4198-RA 1967 CG4198-RA 64..1961 1..1898 9475 99.9 Plus
CG4198.a 1964 CG4198.a 64..1958 1..1898 9405 99.7 Plus
CG15930-RB 1922 CG15930-RB 1823..1922 1898..1799 485 99 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 5206756..5207760 879..1883 4935 99.4 Plus
chrX 22417052 chrX 5205812..5206691 1..880 4400 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:45:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5314210..5315229 879..1898 5085 99.9 Plus
X 23542271 X 5313266..5314145 1..880 4400 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:46:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 5322308..5323327 879..1898 5085 99.9 Plus
X 23527363 X 5321364..5322243 1..880 4400 100 Plus
Blast to na_te.dros performed on 2019-03-16 01:32:14 has no hits.

GH12014.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:33:08 Download gff for GH12014.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 5205812..5206691 1..880 100 -> Plus
chrX 5206758..5207740 881..1863 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:36:50 Download gff for GH12014.complete
Subject Subject Range Query Range Percent Splice Strand
CG4198-RA 1..1434 168..1601 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:08:18 Download gff for GH12014.complete
Subject Subject Range Query Range Percent Splice Strand
CG4198-RA 1..1434 168..1601 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:07:15 Download gff for GH12014.complete
Subject Subject Range Query Range Percent Splice Strand
CG4198-RA 1..1434 168..1601 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:39:00 Download gff for GH12014.complete
Subject Subject Range Query Range Percent Splice Strand
CG4198-RA 1..1434 168..1601 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:36:05 Download gff for GH12014.complete
Subject Subject Range Query Range Percent Splice Strand
CG4198-RA 1..1434 168..1601 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:58:37 Download gff for GH12014.complete
Subject Subject Range Query Range Percent Splice Strand
CG4198-RA 1..1863 1..1863 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:08:18 Download gff for GH12014.complete
Subject Subject Range Query Range Percent Splice Strand
CG4198-RA 1..1863 1..1863 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:07:15 Download gff for GH12014.complete
Subject Subject Range Query Range Percent Splice Strand
CG4198-RA 9..1867 1..1859 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:39:00 Download gff for GH12014.complete
Subject Subject Range Query Range Percent Splice Strand
CG4198-RA 1..1863 1..1863 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:36:05 Download gff for GH12014.complete
Subject Subject Range Query Range Percent Splice Strand
CG4198-RA 9..1867 1..1859 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:33:08 Download gff for GH12014.complete
Subject Subject Range Query Range Percent Splice Strand
X 5313266..5314145 1..880 100 -> Plus
X 5314212..5315194 881..1863 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:33:08 Download gff for GH12014.complete
Subject Subject Range Query Range Percent Splice Strand
X 5313266..5314145 1..880 100 -> Plus
X 5314212..5315194 881..1863 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:33:08 Download gff for GH12014.complete
Subject Subject Range Query Range Percent Splice Strand
X 5313266..5314145 1..880 100 -> Plus
X 5314212..5315194 881..1863 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:07:15 Download gff for GH12014.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5207299..5208178 1..880 100 -> Plus
arm_X 5208245..5209227 881..1863 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:16:31 Download gff for GH12014.complete
Subject Subject Range Query Range Percent Splice Strand
X 5321364..5322243 1..880 100 -> Plus
X 5322310..5323292 881..1863 100   Plus

GH12014.pep Sequence

Translation from 167 to 1600

> GH12014.pep
MSYQIKSTPYFRRMFNESKKNGQLQRLRDEYERIQEFNDRTIEMKMRQVR
LKRLFREIEVIKVAGGAAGGASGGGTSTASSPSNVDQSFGLAGGRVTRRR
RQQAHGAITLASSTPQQRMHKQRIETLARARQLGQEISRRNGLMAEAGTG
GFLRSELRMTAKLQAANDARRAAVERRDLAAKRISYGNDQSRQNIQRMLI
QRQRRHEQQQALAATVASPAAPSSNSYQVSIAQQPVTSRPRHEYTDNCQQ
QQELLAVTSERSTEQGDHLQMECEGQSYSEQSFHSNDCLAQSMDEDLDGE
EELEYTRHRRDGDADEEPERQSCLVTLNKERSTLAATSPLDMRRVKSSID
SYRKTHLSPLASGSNWVRVVGGAQSSTIGSHQPSGTVPPPLNDELQLDSQ
SNSSRWHEVSMMLSWFGAASDIPTDYADAPPPEVPSHYDCDSISNADDMP
TPTVCRRQRMFAEQPSDAATQAQEEPF*

GH12014.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:28:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21335-PA 691 GF21335-PA 1..221 1..205 554 61.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:28:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18751-PA 547 GG18751-PA 3..527 2..477 980 49.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:28:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24610-PA 431 GH24610-PA 3..180 2..196 496 56.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG4198-PA 477 CG4198-PA 1..477 1..477 2447 100 Plus
CG4198-PB 476 CG4198-PB 1..476 1..477 2431 99.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:28:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11072-PA 611 GI11072-PA 1..176 1..205 515 56.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:28:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14289-PA 502 GL14289-PA 1..208 1..205 507 56.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:28:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18022-PA 502 GA18022-PA 1..208 1..205 509 56.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:28:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12399-PA 484 GM12399-PA 1..484 1..477 1575 71.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:28:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16852-PA 514 GJ16852-PA 1..175 1..205 487 58 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:28:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18541-PA 516 GK18541-PA 1..191 1..195 510 62.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:28:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16392-PA 582 GE16392-PA 1..316 1..304 736 62 Plus
Dyak\GE16392-PA 582 GE16392-PA 460..562 371..477 248 55.5 Plus

GH12014.hyp Sequence

Translation from 167 to 1600

> GH12014.hyp
MSYQIKSTPYFRRMFNESKKNGQLQRLRDEYERIQEFNDRTIEMKMRQVR
LKRLFREIEVIKVAGGAAGGASGGGTSTASSPSNVDQSFGLAGGRVTRRR
RQQAHGAITLASSTPQQRMHKQRIETLARARQLGQEISRRNGLMAEAGTG
GFLRSELRMTAKLQAANDARRAAVERRDLAAKRISYGNDQSRQNIQRMLI
QRQRRHEQQQALAATVASPAAPSSNSYQVSIAQQPVTSRPRHEYTDNCQQ
QQELLAVTSERSTEQGDHLQMECEGQSYSEQSFHSNDCLAQSMDEDLDGE
EELEYTRHRRDGDADEEPERQSCLVTLNKERSTLAATSPLDMRRVKSSID
SYRKTHLSPLASGSNWVRVVGGAQSSTIGSHQPSGTVPPPLNDELQLDSQ
SNSSRWHEVSMMLSWFGAASDIPTDYADAPPPEVPSHYDCDSISNADDMP
TPTVCRRQRMFAEQPSDAATQAQEEPF*

GH12014.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:27:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG4198-PA 477 CG4198-PA 1..477 1..477 2447 100 Plus
CG4198-PB 476 CG4198-PB 1..476 1..477 2431 99.8 Plus