Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
GH12023.complete Sequence
2178 bp (2178 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058346
> GH12023.complete
AAAAGCCGCCGCCTTTTGTTCCAGCCCCATTAGTAAACACGTGCAGTTGT
GTTTTGTTGCAATGGGAAAAGTTCGAAAAGTAAAAACACGGACGCCATCC
GGCGTGGACACCTCGGCGGAAATCGATGTGGAATCAGCGGGCGAAGCGGA
GGGCTGCGGACCCATCGAGGCGATTTGCGTTCACCTGCAGCAGGCGAACG
TGGAGGAGAAGCTGAACGGACTGCACTCATTCGCCGTGCTGGCGCTGCGA
AAGGAGAAGGTTCCCGAAATACGCGACAGCGAGTTGGTCCGGATTGCGGC
CCCCCTGCTGTGCGATAAGGAGAGCGCCATCCGGAATGCGGCGGCCGGTG
CCTTTCGGAATTTGTCGGTGTTTGGCACGGAGGTGTGCGACTTCCTCGTT
GAGAACGACATACTGACCGCCCTGCTGACTCTGGTCCGTAGCTATGATCT
GACAAAAGGTGGATTCGAAAACGAGCTGCATGCGGACACCTTCCAGCAAG
CAATCCATCTGCTCCGAAATCTGTGCGAGAGCTCGCCCACCGCCACAGAA
GCACTAAATCAGGCCAACTTTCTTTCCAGCCTGCTGCTGGGCTTCGACTA
CAGAAAGTTCGGACTCGAAGTTGCCATTTCAGTGGCCCAACTCGTATTGG
TGGTGTCTGAGAACAACTCCAGCTCGTGGAACGTCCTGGCCAGCAGTACA
ATACTACCTGAGCTTCTTGTGGCTCCCACAGAAAGTCACGCGCAGCTTTA
CCTGAACGCCTTAGCTGCTGGTATCCTATGCAATGTACCCGCATGCGCGG
CCGCCCACACTCGGGAAATCCTGAACAGTCTGGACAAACTACTCTCCATA
GATCCACAGGCCCAGCTGCAAAGCTGCAAAAGCGAAATTCTAAATGCAAA
GTCGAAGAACGAGGCCCCCGTGCTGGAAATCTCCATGGAGACAGAGGATA
TGACGGAAACACAGAGTGCCAATCAGTCGAAACCTAACCAATGCGATGCC
GAGGTAGCACTCAAGAACCTCGAGCACTTGCTAGATGCCCAGCGCCTGGT
AGCGGAGATTATAACCAACCTGGGCTCCAGCGATGAACAGAGCAACTGGG
ATACAGATAGCGAGCATTCAGAGTCTGAGAGCGTGGCCGATTACGACATG
GAGGACGAGACAGCTGACAGTGGATCGGGGGGACTGCCCGCCAACTTCTT
GGAGACTATCAAACAAAACAAAGTGATCGAGAAACTATGGCAAAAGGCTC
AACCACTGCAACCTGCTGTGGAAAATCTTGTGTCCCAGCAAGAGAATATC
AAGGAGAAAGTGGAAAAATTAAGAGTATCATACTTGATTTGCCTCCAGAA
CCTATGCAATGTGCTGCCCCCTGAAGATTTGGGGGGCTGCAGCAACCTCT
ATAACATGTGGATGATCTTGGGTCAACAAGCATTTAGGGGAAGTGAAGAT
GTATCCGTTATGGAGGCCATTACGTCACTAATGCGCTCCTCGCTGAGTTT
GCTCAAGTCTCGCAAGGATCTTTTCGGCCAGATGACCGAGAATGATCTCA
ACATGATTATCGAGGGCGCTAGCAAGTGCACAGATATAAATATTCGCGTT
AACTGGAACCGCATGCTGGGTACGCTGGGTTCTCTGCTCTCAGAGCCCCT
GGTTAAGGCAATAGTGCTCTTCCTATTGACTTACTGTGCCCAGGAAGATG
ACCTGTGGGCCCTGTCTGAAGGACTAGATGCACTAATGGACATTTTCGCA
GTGGACGACTGGCCGCAGATCATCGCGGAGTTGGAGATGTGCGATCGTGT
CCAGGCACTAGAGGAGTTGTTCAAGTCTAAACTGCGGCAGCAGCGACGGG
AGCTAAAGGAGCGACGAGCCACAGTGCAAACAGTGAAGACTAATTTTTCA
CGCTTTGTTTTTTATCTTAATAAGAACTGTAAAAAATAAATTAACATGAC
CACTAATTAAAGCTATTGTCTAGTTTCAGAGAACAATACTTTTAGTTCTT
AAGCATGCCAAAATATTTGTCGACGATAATAGAAACAGAAAAAATCTGTT
AAATTTGTAACTTCCTAATTGTCATGTCTTTTGTATTTATTAATATTCGA
CTAACAAGTTTTCCACTTAAAAAAGCGTTAATAGATCGATTGATTCCATA
GCTAAAATGTAAAAAAAAAAAAAAAAAA
GH12023.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:23:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10286-RA | 2162 | CG10286-RA | 3..2162 | 1..2160 | 10800 | 100 | Plus |
CG1041-RB | 2388 | CG1041-RB | 2259..2388 | 2163..2034 | 650 | 100 | Minus |
CG1041-RA | 2488 | CG1041-RA | 2359..2488 | 2163..2034 | 650 | 100 | Minus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:16:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 2194633..2196792 | 1..2160 | 10785 | 100 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:45:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:16:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6368956..6371118 | 1..2163 | 10815 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:46:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 6109787..6111949 | 1..2163 | 10815 | 100 | Plus |
Blast to na_te.dros performed on 2019-03-15 17:16:22 has no hits.
GH12023.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:17:15 Download gff for
GH12023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 2194633..2196792 | 1..2160 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:36:53 Download gff for
GH12023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10286-RA | 1..1878 | 62..1939 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:08:21 Download gff for
GH12023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10286-RA | 1..1878 | 62..1939 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:30:22 Download gff for
GH12023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10286-RA | 1..1878 | 62..1939 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:39:02 Download gff for
GH12023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10286-RA | 1..1878 | 62..1939 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:31:24 Download gff for
GH12023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10286-RA | 1..1878 | 62..1939 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:58:43 Download gff for
GH12023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10286-RA | 3..2162 | 1..2160 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:08:20 Download gff for
GH12023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10286-RA | 3..2162 | 1..2160 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:30:22 Download gff for
GH12023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10286-RA | 1..2151 | 10..2160 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:39:02 Download gff for
GH12023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10286-RA | 3..2162 | 1..2160 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:31:24 Download gff for
GH12023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10286-RA | 1..2151 | 10..2160 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:17:15 Download gff for
GH12023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6368956..6371115 | 1..2160 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:17:15 Download gff for
GH12023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6368956..6371115 | 1..2160 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:17:15 Download gff for
GH12023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6368956..6371115 | 1..2160 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:30:22 Download gff for
GH12023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2194678..2196837 | 1..2160 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:16:34 Download gff for
GH12023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6109787..6111946 | 1..2160 | 100 | | Plus |
GH12023.hyp Sequence
Translation from 1 to 1938
> GH12023.hyp
KAAAFCSSPISKHVQLCFVAMGKVRKVKTRTPSGVDTSAEIDVESAGEAE
GCGPIEAICVHLQQANVEEKLNGLHSFAVLALRKEKVPEIRDSELVRIAA
PLLCDKESAIRNAAAGAFRNLSVFGTEVCDFLVENDILTALLTLVRSYDL
TKGGFENELHADTFQQAIHLLRNLCESSPTATEALNQANFLSSLLLGFDY
RKFGLEVAISVAQLVLVVSENNSSSWNVLASSTILPELLVAPTESHAQLY
LNALAAGILCNVPACAAAHTREILNSLDKLLSIDPQAQLQSCKSEILNAK
SKNEAPVLEISMETEDMTETQSANQSKPNQCDAEVALKNLEHLLDAQRLV
AEIITNLGSSDEQSNWDTDSEHSESESVADYDMEDETADSGSGGLPANFL
ETIKQNKVIEKLWQKAQPLQPAVENLVSQQENIKEKVEKLRVSYLICLQN
LCNVLPPEDLGGCSNLYNMWMILGQQAFRGSEDVSVMEAITSLMRSSLSL
LKSRKDLFGQMTENDLNMIIEGASKCTDINIRVNWNRMLGTLGSLLSEPL
VKAIVLFLLTYCAQEDDLWALSEGLDALMDIFAVDDWPQIIAELEMCDRV
QALEELFKSKLRQQRRELKERRATVQTVKTNFSRFVFYLNKNCKK*
GH12023.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:27:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10286-PA | 625 | CG10286-PA | 1..625 | 21..645 | 3156 | 100 | Plus |
GH12023.pep Sequence
Translation from 61 to 1938
> GH12023.pep
MGKVRKVKTRTPSGVDTSAEIDVESAGEAEGCGPIEAICVHLQQANVEEK
LNGLHSFAVLALRKEKVPEIRDSELVRIAAPLLCDKESAIRNAAAGAFRN
LSVFGTEVCDFLVENDILTALLTLVRSYDLTKGGFENELHADTFQQAIHL
LRNLCESSPTATEALNQANFLSSLLLGFDYRKFGLEVAISVAQLVLVVSE
NNSSSWNVLASSTILPELLVAPTESHAQLYLNALAAGILCNVPACAAAHT
REILNSLDKLLSIDPQAQLQSCKSEILNAKSKNEAPVLEISMETEDMTET
QSANQSKPNQCDAEVALKNLEHLLDAQRLVAEIITNLGSSDEQSNWDTDS
EHSESESVADYDMEDETADSGSGGLPANFLETIKQNKVIEKLWQKAQPLQ
PAVENLVSQQENIKEKVEKLRVSYLICLQNLCNVLPPEDLGGCSNLYNMW
MILGQQAFRGSEDVSVMEAITSLMRSSLSLLKSRKDLFGQMTENDLNMII
EGASKCTDINIRVNWNRMLGTLGSLLSEPLVKAIVLFLLTYCAQEDDLWA
LSEGLDALMDIFAVDDWPQIIAELEMCDRVQALEELFKSKLRQQRRELKE
RRATVQTVKTNFSRFVFYLNKNCKK*
GH12023.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:28:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF18357-PA | 629 | GF18357-PA | 1..629 | 1..625 | 2500 | 77.4 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:28:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG13390-PA | 625 | GG13390-PA | 1..625 | 1..625 | 3015 | 93 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10286-PA | 625 | CG10286-PA | 1..625 | 1..625 | 3156 | 100 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:28:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL21742-PA | 646 | GL21742-PA | 1..278 | 1..275 | 833 | 62.7 | Plus |
Dper\GL21742-PA | 646 | GL21742-PA | 602..646 | 581..625 | 199 | 80 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:28:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA10220-PC | 629 | GA10220-PC | 1..629 | 1..625 | 2292 | 70.6 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:28:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM10891-PA | 625 | GM10891-PA | 1..625 | 1..625 | 3225 | 97.1 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:28:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD19870-PA | 625 | GD19870-PA | 1..625 | 1..625 | 3241 | 97.6 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:28:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK12176-PA | 639 | GK12176-PA | 1..639 | 1..625 | 1955 | 64.1 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:28:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE10216-PA | 624 | GE10216-PA | 1..624 | 1..624 | 3069 | 95 | Plus |