Clone GH12023 Report

Search the DGRC for GH12023

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:120
Well:23
Vector:pOT2
Associated Gene/TranscriptCG10286-RA
Protein status:GH12023.pep: gold
Preliminary Size:2153
Sequenced Size:2178

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10286 2001-01-01 Release 2 assignment
CG10286 2001-09-19 Blastp of sequenced clone
CG10286 2003-01-01 Sim4 clustering to Release 3
CG10286 2008-04-29 Release 5.5 accounting
CG10286 2008-08-15 Release 5.9 accounting
CG10286 2008-12-18 5.12 accounting

Clone Sequence Records

GH12023.complete Sequence

2178 bp (2178 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058346

> GH12023.complete
AAAAGCCGCCGCCTTTTGTTCCAGCCCCATTAGTAAACACGTGCAGTTGT
GTTTTGTTGCAATGGGAAAAGTTCGAAAAGTAAAAACACGGACGCCATCC
GGCGTGGACACCTCGGCGGAAATCGATGTGGAATCAGCGGGCGAAGCGGA
GGGCTGCGGACCCATCGAGGCGATTTGCGTTCACCTGCAGCAGGCGAACG
TGGAGGAGAAGCTGAACGGACTGCACTCATTCGCCGTGCTGGCGCTGCGA
AAGGAGAAGGTTCCCGAAATACGCGACAGCGAGTTGGTCCGGATTGCGGC
CCCCCTGCTGTGCGATAAGGAGAGCGCCATCCGGAATGCGGCGGCCGGTG
CCTTTCGGAATTTGTCGGTGTTTGGCACGGAGGTGTGCGACTTCCTCGTT
GAGAACGACATACTGACCGCCCTGCTGACTCTGGTCCGTAGCTATGATCT
GACAAAAGGTGGATTCGAAAACGAGCTGCATGCGGACACCTTCCAGCAAG
CAATCCATCTGCTCCGAAATCTGTGCGAGAGCTCGCCCACCGCCACAGAA
GCACTAAATCAGGCCAACTTTCTTTCCAGCCTGCTGCTGGGCTTCGACTA
CAGAAAGTTCGGACTCGAAGTTGCCATTTCAGTGGCCCAACTCGTATTGG
TGGTGTCTGAGAACAACTCCAGCTCGTGGAACGTCCTGGCCAGCAGTACA
ATACTACCTGAGCTTCTTGTGGCTCCCACAGAAAGTCACGCGCAGCTTTA
CCTGAACGCCTTAGCTGCTGGTATCCTATGCAATGTACCCGCATGCGCGG
CCGCCCACACTCGGGAAATCCTGAACAGTCTGGACAAACTACTCTCCATA
GATCCACAGGCCCAGCTGCAAAGCTGCAAAAGCGAAATTCTAAATGCAAA
GTCGAAGAACGAGGCCCCCGTGCTGGAAATCTCCATGGAGACAGAGGATA
TGACGGAAACACAGAGTGCCAATCAGTCGAAACCTAACCAATGCGATGCC
GAGGTAGCACTCAAGAACCTCGAGCACTTGCTAGATGCCCAGCGCCTGGT
AGCGGAGATTATAACCAACCTGGGCTCCAGCGATGAACAGAGCAACTGGG
ATACAGATAGCGAGCATTCAGAGTCTGAGAGCGTGGCCGATTACGACATG
GAGGACGAGACAGCTGACAGTGGATCGGGGGGACTGCCCGCCAACTTCTT
GGAGACTATCAAACAAAACAAAGTGATCGAGAAACTATGGCAAAAGGCTC
AACCACTGCAACCTGCTGTGGAAAATCTTGTGTCCCAGCAAGAGAATATC
AAGGAGAAAGTGGAAAAATTAAGAGTATCATACTTGATTTGCCTCCAGAA
CCTATGCAATGTGCTGCCCCCTGAAGATTTGGGGGGCTGCAGCAACCTCT
ATAACATGTGGATGATCTTGGGTCAACAAGCATTTAGGGGAAGTGAAGAT
GTATCCGTTATGGAGGCCATTACGTCACTAATGCGCTCCTCGCTGAGTTT
GCTCAAGTCTCGCAAGGATCTTTTCGGCCAGATGACCGAGAATGATCTCA
ACATGATTATCGAGGGCGCTAGCAAGTGCACAGATATAAATATTCGCGTT
AACTGGAACCGCATGCTGGGTACGCTGGGTTCTCTGCTCTCAGAGCCCCT
GGTTAAGGCAATAGTGCTCTTCCTATTGACTTACTGTGCCCAGGAAGATG
ACCTGTGGGCCCTGTCTGAAGGACTAGATGCACTAATGGACATTTTCGCA
GTGGACGACTGGCCGCAGATCATCGCGGAGTTGGAGATGTGCGATCGTGT
CCAGGCACTAGAGGAGTTGTTCAAGTCTAAACTGCGGCAGCAGCGACGGG
AGCTAAAGGAGCGACGAGCCACAGTGCAAACAGTGAAGACTAATTTTTCA
CGCTTTGTTTTTTATCTTAATAAGAACTGTAAAAAATAAATTAACATGAC
CACTAATTAAAGCTATTGTCTAGTTTCAGAGAACAATACTTTTAGTTCTT
AAGCATGCCAAAATATTTGTCGACGATAATAGAAACAGAAAAAATCTGTT
AAATTTGTAACTTCCTAATTGTCATGTCTTTTGTATTTATTAATATTCGA
CTAACAAGTTTTCCACTTAAAAAAGCGTTAATAGATCGATTGATTCCATA
GCTAAAATGTAAAAAAAAAAAAAAAAAA

GH12023.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:23:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG10286-RA 2162 CG10286-RA 3..2162 1..2160 10800 100 Plus
CG1041-RB 2388 CG1041-RB 2259..2388 2163..2034 650 100 Minus
CG1041-RA 2488 CG1041-RA 2359..2488 2163..2034 650 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:16:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 2194633..2196792 1..2160 10785 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:45:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:16:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6368956..6371118 1..2163 10815 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:46:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 6109787..6111949 1..2163 10815 100 Plus
Blast to na_te.dros performed on 2019-03-15 17:16:22 has no hits.

GH12023.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:17:15 Download gff for GH12023.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 2194633..2196792 1..2160 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:36:53 Download gff for GH12023.complete
Subject Subject Range Query Range Percent Splice Strand
CG10286-RA 1..1878 62..1939 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:08:21 Download gff for GH12023.complete
Subject Subject Range Query Range Percent Splice Strand
CG10286-RA 1..1878 62..1939 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:30:22 Download gff for GH12023.complete
Subject Subject Range Query Range Percent Splice Strand
CG10286-RA 1..1878 62..1939 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:39:02 Download gff for GH12023.complete
Subject Subject Range Query Range Percent Splice Strand
CG10286-RA 1..1878 62..1939 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:31:24 Download gff for GH12023.complete
Subject Subject Range Query Range Percent Splice Strand
CG10286-RA 1..1878 62..1939 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:58:43 Download gff for GH12023.complete
Subject Subject Range Query Range Percent Splice Strand
CG10286-RA 3..2162 1..2160 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:08:20 Download gff for GH12023.complete
Subject Subject Range Query Range Percent Splice Strand
CG10286-RA 3..2162 1..2160 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:30:22 Download gff for GH12023.complete
Subject Subject Range Query Range Percent Splice Strand
CG10286-RA 1..2151 10..2160 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:39:02 Download gff for GH12023.complete
Subject Subject Range Query Range Percent Splice Strand
CG10286-RA 3..2162 1..2160 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:31:24 Download gff for GH12023.complete
Subject Subject Range Query Range Percent Splice Strand
CG10286-RA 1..2151 10..2160 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:17:15 Download gff for GH12023.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6368956..6371115 1..2160 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:17:15 Download gff for GH12023.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6368956..6371115 1..2160 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:17:15 Download gff for GH12023.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6368956..6371115 1..2160 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:30:22 Download gff for GH12023.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2194678..2196837 1..2160 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:16:34 Download gff for GH12023.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6109787..6111946 1..2160 100   Plus

GH12023.hyp Sequence

Translation from 1 to 1938

> GH12023.hyp
KAAAFCSSPISKHVQLCFVAMGKVRKVKTRTPSGVDTSAEIDVESAGEAE
GCGPIEAICVHLQQANVEEKLNGLHSFAVLALRKEKVPEIRDSELVRIAA
PLLCDKESAIRNAAAGAFRNLSVFGTEVCDFLVENDILTALLTLVRSYDL
TKGGFENELHADTFQQAIHLLRNLCESSPTATEALNQANFLSSLLLGFDY
RKFGLEVAISVAQLVLVVSENNSSSWNVLASSTILPELLVAPTESHAQLY
LNALAAGILCNVPACAAAHTREILNSLDKLLSIDPQAQLQSCKSEILNAK
SKNEAPVLEISMETEDMTETQSANQSKPNQCDAEVALKNLEHLLDAQRLV
AEIITNLGSSDEQSNWDTDSEHSESESVADYDMEDETADSGSGGLPANFL
ETIKQNKVIEKLWQKAQPLQPAVENLVSQQENIKEKVEKLRVSYLICLQN
LCNVLPPEDLGGCSNLYNMWMILGQQAFRGSEDVSVMEAITSLMRSSLSL
LKSRKDLFGQMTENDLNMIIEGASKCTDINIRVNWNRMLGTLGSLLSEPL
VKAIVLFLLTYCAQEDDLWALSEGLDALMDIFAVDDWPQIIAELEMCDRV
QALEELFKSKLRQQRRELKERRATVQTVKTNFSRFVFYLNKNCKK*

GH12023.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:27:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG10286-PA 625 CG10286-PA 1..625 21..645 3156 100 Plus

GH12023.pep Sequence

Translation from 61 to 1938

> GH12023.pep
MGKVRKVKTRTPSGVDTSAEIDVESAGEAEGCGPIEAICVHLQQANVEEK
LNGLHSFAVLALRKEKVPEIRDSELVRIAAPLLCDKESAIRNAAAGAFRN
LSVFGTEVCDFLVENDILTALLTLVRSYDLTKGGFENELHADTFQQAIHL
LRNLCESSPTATEALNQANFLSSLLLGFDYRKFGLEVAISVAQLVLVVSE
NNSSSWNVLASSTILPELLVAPTESHAQLYLNALAAGILCNVPACAAAHT
REILNSLDKLLSIDPQAQLQSCKSEILNAKSKNEAPVLEISMETEDMTET
QSANQSKPNQCDAEVALKNLEHLLDAQRLVAEIITNLGSSDEQSNWDTDS
EHSESESVADYDMEDETADSGSGGLPANFLETIKQNKVIEKLWQKAQPLQ
PAVENLVSQQENIKEKVEKLRVSYLICLQNLCNVLPPEDLGGCSNLYNMW
MILGQQAFRGSEDVSVMEAITSLMRSSLSLLKSRKDLFGQMTENDLNMII
EGASKCTDINIRVNWNRMLGTLGSLLSEPLVKAIVLFLLTYCAQEDDLWA
LSEGLDALMDIFAVDDWPQIIAELEMCDRVQALEELFKSKLRQQRRELKE
RRATVQTVKTNFSRFVFYLNKNCKK*

GH12023.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:28:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18357-PA 629 GF18357-PA 1..629 1..625 2500 77.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:28:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13390-PA 625 GG13390-PA 1..625 1..625 3015 93 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG10286-PA 625 CG10286-PA 1..625 1..625 3156 100 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:28:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21742-PA 646 GL21742-PA 1..278 1..275 833 62.7 Plus
Dper\GL21742-PA 646 GL21742-PA 602..646 581..625 199 80 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:28:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10220-PC 629 GA10220-PC 1..629 1..625 2292 70.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:28:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10891-PA 625 GM10891-PA 1..625 1..625 3225 97.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:28:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19870-PA 625 GD19870-PA 1..625 1..625 3241 97.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:28:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12176-PA 639 GK12176-PA 1..639 1..625 1955 64.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:28:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10216-PA 624 GE10216-PA 1..624 1..624 3069 95 Plus