Clone GH12037 Report

Search the DGRC for GH12037

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:120
Well:37
Vector:pOT2
Associated Gene/TranscriptCG1146-RA
Protein status:GH12037.pep: gold
Preliminary Size:1300
Sequenced Size:1889

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1146 2001-01-01 Release 2 assignment
CG1146 2003-02-17 Blastp of sequenced clone
CG1146 2008-04-29 Release 5.5 accounting
CG1146 2008-08-15 Release 5.9 accounting
CG1146 2008-12-18 5.12 accounting

Clone Sequence Records

GH12037.complete Sequence

1889 bp (1889 high quality bases) assembled on 2003-02-17

GenBank Submission: BT004499

> GH12037.complete
GAGAACGACCGCGAGGCGCAACGGAATACAAAAAGCGGCTGAAGAAACAA
AAGAATCCGATCCGAAACAGCTCGCAAAAAACTAAATAGCTGCTAAATAA
ATAAATAAATAAATAAAGCTCGGGCTATCAGATGTCGGGCCAAGATAAAA
ATACGCACTAATGGAAATATAAATATAAATATTAATGCAAGCGGCAGTCG
CAAAGTGCAAAACGCAGTGGACACCACTTGAAGAAAGAGTGATGTGATGT
CATAATAAAACTTTGCCCTTATCGACAATATAAAAAAAAGTGAAAAAAAC
GATATCAGCGGAAAAGCGAGGTAAAAGTTAATAAATACCGCCAAGCAAAT
CGAATTGCAATTTGTGATAACAAAGCGAGCATGACGGACTACACGGAATA
CGTGGAAACCGCCTGGAAGTATGCGGAATGGCTACCTTACCTCCTCGTCT
CCTACGTGGTAGTCACCCTGCTGCCGAAGTCCCTCATCCGGATGAAACGC
TTCGCGGACGCGGACTACGAGGCCAACAGGAACATGTTTCACCGCTGCTA
CGGCCCAGAGCTATGCTGCCACGTTCTGGGCCAGGAGCAGGTCGCCGGAA
AGGTGAAGCCCAAGGCCAGGAAGCCAGTGACCCGGGTGTATCCCAAGCGT
CAGCAGGTGGCGCCCAAAGCGGAGCTACCACCTCCTAGTCCAGCGCCCGT
TAAGCGGAGCAACGTCACCAAGATAGCCAGGATGTTTGAGACGGGCAACA
CGCGCCAGGTGAGCCGCGTTGCGCCCATAACGCTTCCCGAGATCAGGATG
TTCGGAGCAAGCGATGAGTCCAGAGACTCGACGCCCTGCGTCTCGCGGAA
AACCAGCATCGCCAGTCAGCTCTCGGCTCAGCTGCAGCACATCGAGCAGA
CGATGCACCTGTGGCAGGAACTGGAGGAGGAGCCCTCCAAGAAGGCATCC
AGCCACAACGATTGGGAGCCCATGGCAGTGCCGGTTCCAAGACGAACCCG
TGGTACCTCTGCCACGCCCTCCACGGCCTCCCCGCTCTCCAGTTCCCCGG
AACTGGAGCACTCCCGATCTCCGGTTCTCCTGAGGAAGCCGCCTTCCCTG
TGCCTGCAGACCAGCATGGAGGATATATTCCAGGTGATCGCCCGGAGTGC
CGAGGAGCCGGAAGACTGCCCGGACTGCCAGTGCCTCTCGCCGGTGACCA
GCATCGATGATATTCTCTCCGAGCGGAGGTTCTCACGCCCCCTGTCCGCC
TACTCCATCACCGATCTCCTCAACGAAGAGCAGGCCTCGTGTATCGAAGA
GACCACGTACATCAACGAAACCAGATGAGGAACACGGTGGGATTGAAGGA
ACGTTTTATAGTGCCATCCCCCAGGGTCAGATGGAACAACCAGGTGAACT
CCCATCCCAACCAGGCATTTGTCCAGGAAACAAAGCCACCGGAGACCTTG
CCAAGTCCCCCAAGTCCACAGGAAAACGCCCGCATTTTGTTTGTTTAATC
GACGGAAACTTAAGCAAATCAAAGTAAAGACTTTCCAACCTAAATCGCAA
TTGGCAATCGAAGCCTGTACTTAGAATCCCAATCAATTGTATAAAAAACG
TTAGTTGTGTCAGGAAACCGAATTCAAATTGCGAAGCATCTCATTCACAG
AGAACAGTACTGCTAAACTAATATGCTGATTGTACGTATTAACTTATGAA
TAAACATGAATTTGTATGGTAGTATTACTTATCGTTAAATGTACTATATG
TTGTAAATGAAAACTGTATTAAATGCAGCACACACACACACACACACACC
TTATTATCGTATATTCTTAATAAAGAGAAAACACTGTATGCACAGCTGCG
CCTGGGCATTCGAACAATTTTAAAAAAAAAAAAAAAAAA

GH12037.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:20:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG1146-RA 2058 CG1146-RA 142..2013 1..1872 9360 100 Plus
CG1146-RB 1879 CG1146-RB 196..1834 234..1872 8180 99.9 Plus
CG1146.a 1883 CG1146.a 249..1883 238..1872 8175 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:18:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 2490481..2492120 236..1871 7770 98.5 Plus
chr3L 24539361 chr3L 2489752..2489988 1..237 1140 98.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:45:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:18:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2490978..2492614 236..1872 8185 100 Plus
3L 28110227 3L 2490252..2490488 1..237 1185 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 2490978..2492614 236..1872 8185 100 Plus
3L 28103327 3L 2490252..2490488 1..237 1185 100 Plus
Blast to na_te.dros performed on 2019-03-16 03:18:25 has no hits.

GH12037.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:19:35 Download gff for GH12037.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 2490483..2492120 238..1871 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:36:56 Download gff for GH12037.complete
Subject Subject Range Query Range Percent Splice Strand
CG1146-RA 1..948 381..1328 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:50:20 Download gff for GH12037.complete
Subject Subject Range Query Range Percent Splice Strand
CG1146-RA 1..948 381..1328 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:56:34 Download gff for GH12037.complete
Subject Subject Range Query Range Percent Splice Strand
CG1146-RB 1..948 381..1328 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:41:34 Download gff for GH12037.complete
Subject Subject Range Query Range Percent Splice Strand
CG1146-RA 1..948 381..1328 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:34:44 Download gff for GH12037.complete
Subject Subject Range Query Range Percent Splice Strand
CG1146-RC 1..948 381..1328 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:03:24 Download gff for GH12037.complete
Subject Subject Range Query Range Percent Splice Strand
CG1146-RA 26..1896 1..1871 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:50:20 Download gff for GH12037.complete
Subject Subject Range Query Range Percent Splice Strand
CG1146-RA 26..1896 1..1871 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:56:34 Download gff for GH12037.complete
Subject Subject Range Query Range Percent Splice Strand
CG1146-RA 33..1903 1..1871 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:41:35 Download gff for GH12037.complete
Subject Subject Range Query Range Percent Splice Strand
CG1146-RA 26..1896 1..1871 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:34:44 Download gff for GH12037.complete
Subject Subject Range Query Range Percent Splice Strand
CG1146-RA 33..1903 1..1871 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:19:35 Download gff for GH12037.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2490252..2490488 1..237 100 -> Plus
3L 2490980..2492613 238..1871 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:19:35 Download gff for GH12037.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2490252..2490488 1..237 100 -> Plus
3L 2490980..2492613 238..1871 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:19:35 Download gff for GH12037.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2490252..2490488 1..237 100 -> Plus
3L 2490980..2492613 238..1871 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:56:34 Download gff for GH12037.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2490252..2490488 1..237 100 -> Plus
arm_3L 2490980..2492613 238..1871 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:12:08 Download gff for GH12037.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2490252..2490488 1..237 100 -> Plus
3L 2490980..2492613 238..1871 100   Plus

GH12037.pep Sequence

Translation from 380 to 1327

> GH12037.pep
MTDYTEYVETAWKYAEWLPYLLVSYVVVTLLPKSLIRMKRFADADYEANR
NMFHRCYGPELCCHVLGQEQVAGKVKPKARKPVTRVYPKRQQVAPKAELP
PPSPAPVKRSNVTKIARMFETGNTRQVSRVAPITLPEIRMFGASDESRDS
TPCVSRKTSIASQLSAQLQHIEQTMHLWQELEEEPSKKASSHNDWEPMAV
PVPRRTRGTSATPSTASPLSSSPELEHSRSPVLLRKPPSLCLQTSMEDIF
QVIARSAEEPEDCPDCQCLSPVTSIDDILSERRFSRPLSAYSITDLLNEE
QASCIEETTYINETR*

GH12037.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:51:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24921-PA 314 GF24921-PA 1..312 1..314 1174 78.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14867-PA 315 GG14867-PA 1..315 1..315 1607 95.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15730-PA 323 GH15730-PA 1..315 1..315 851 59.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:18:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG1146-PD 315 CG1146-PD 1..315 1..315 1647 100 Plus
CG1146-PA 315 CG1146-PA 1..315 1..315 1647 100 Plus
CG1146-PC 315 CG1146-PC 1..315 1..315 1647 100 Plus
CG1146-PB 315 CG1146-PB 1..315 1..315 1647 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:51:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12786-PA 326 GI12786-PA 3..318 2..314 944 61.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:51:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11874-PA 331 GL11874-PA 18..331 1..315 1216 77.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11016-PA 331 GA11016-PA 18..331 1..315 1211 77.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:51:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13690-PA 315 GD13690-PA 1..315 1..315 1626 97.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16085-PA 307 GJ16085-PA 1..299 1..314 930 64.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12649-PA 351 GK12649-PA 4..346 2..312 918 57.9 Plus

GH12037.hyp Sequence

Translation from 380 to 1327

> GH12037.hyp
MTDYTEYVETAWKYAEWLPYLLVSYVVVTLLPKSLIRMKRFADADYEANR
NMFHRCYGPELCCHVLGQEQVAGKVKPKARKPVTRVYPKRQQVAPKAELP
PPSPAPVKRSNVTKIARMFETGNTRQVSRVAPITLPEIRMFGASDESRDS
TPCVSRKTSIASQLSAQLQHIEQTMHLWQELEEEPSKKASSHNDWEPMAV
PVPRRTRGTSATPSTASPLSSSPELEHSRSPVLLRKPPSLCLQTSMEDIF
QVIARSAEEPEDCPDCQCLSPVTSIDDILSERRFSRPLSAYSITDLLNEE
QASCIEETTYINETR*

GH12037.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:27:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG1146-PD 315 CG1146-PD 1..315 1..315 1647 100 Plus
CG1146-PA 315 CG1146-PA 1..315 1..315 1647 100 Plus
CG1146-PC 315 CG1146-PC 1..315 1..315 1647 100 Plus
CG1146-PB 315 CG1146-PB 1..315 1..315 1647 100 Plus