Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
GH12037.complete Sequence
1889 bp (1889 high quality bases) assembled on 2003-02-17
GenBank Submission: BT004499
> GH12037.complete
GAGAACGACCGCGAGGCGCAACGGAATACAAAAAGCGGCTGAAGAAACAA
AAGAATCCGATCCGAAACAGCTCGCAAAAAACTAAATAGCTGCTAAATAA
ATAAATAAATAAATAAAGCTCGGGCTATCAGATGTCGGGCCAAGATAAAA
ATACGCACTAATGGAAATATAAATATAAATATTAATGCAAGCGGCAGTCG
CAAAGTGCAAAACGCAGTGGACACCACTTGAAGAAAGAGTGATGTGATGT
CATAATAAAACTTTGCCCTTATCGACAATATAAAAAAAAGTGAAAAAAAC
GATATCAGCGGAAAAGCGAGGTAAAAGTTAATAAATACCGCCAAGCAAAT
CGAATTGCAATTTGTGATAACAAAGCGAGCATGACGGACTACACGGAATA
CGTGGAAACCGCCTGGAAGTATGCGGAATGGCTACCTTACCTCCTCGTCT
CCTACGTGGTAGTCACCCTGCTGCCGAAGTCCCTCATCCGGATGAAACGC
TTCGCGGACGCGGACTACGAGGCCAACAGGAACATGTTTCACCGCTGCTA
CGGCCCAGAGCTATGCTGCCACGTTCTGGGCCAGGAGCAGGTCGCCGGAA
AGGTGAAGCCCAAGGCCAGGAAGCCAGTGACCCGGGTGTATCCCAAGCGT
CAGCAGGTGGCGCCCAAAGCGGAGCTACCACCTCCTAGTCCAGCGCCCGT
TAAGCGGAGCAACGTCACCAAGATAGCCAGGATGTTTGAGACGGGCAACA
CGCGCCAGGTGAGCCGCGTTGCGCCCATAACGCTTCCCGAGATCAGGATG
TTCGGAGCAAGCGATGAGTCCAGAGACTCGACGCCCTGCGTCTCGCGGAA
AACCAGCATCGCCAGTCAGCTCTCGGCTCAGCTGCAGCACATCGAGCAGA
CGATGCACCTGTGGCAGGAACTGGAGGAGGAGCCCTCCAAGAAGGCATCC
AGCCACAACGATTGGGAGCCCATGGCAGTGCCGGTTCCAAGACGAACCCG
TGGTACCTCTGCCACGCCCTCCACGGCCTCCCCGCTCTCCAGTTCCCCGG
AACTGGAGCACTCCCGATCTCCGGTTCTCCTGAGGAAGCCGCCTTCCCTG
TGCCTGCAGACCAGCATGGAGGATATATTCCAGGTGATCGCCCGGAGTGC
CGAGGAGCCGGAAGACTGCCCGGACTGCCAGTGCCTCTCGCCGGTGACCA
GCATCGATGATATTCTCTCCGAGCGGAGGTTCTCACGCCCCCTGTCCGCC
TACTCCATCACCGATCTCCTCAACGAAGAGCAGGCCTCGTGTATCGAAGA
GACCACGTACATCAACGAAACCAGATGAGGAACACGGTGGGATTGAAGGA
ACGTTTTATAGTGCCATCCCCCAGGGTCAGATGGAACAACCAGGTGAACT
CCCATCCCAACCAGGCATTTGTCCAGGAAACAAAGCCACCGGAGACCTTG
CCAAGTCCCCCAAGTCCACAGGAAAACGCCCGCATTTTGTTTGTTTAATC
GACGGAAACTTAAGCAAATCAAAGTAAAGACTTTCCAACCTAAATCGCAA
TTGGCAATCGAAGCCTGTACTTAGAATCCCAATCAATTGTATAAAAAACG
TTAGTTGTGTCAGGAAACCGAATTCAAATTGCGAAGCATCTCATTCACAG
AGAACAGTACTGCTAAACTAATATGCTGATTGTACGTATTAACTTATGAA
TAAACATGAATTTGTATGGTAGTATTACTTATCGTTAAATGTACTATATG
TTGTAAATGAAAACTGTATTAAATGCAGCACACACACACACACACACACC
TTATTATCGTATATTCTTAATAAAGAGAAAACACTGTATGCACAGCTGCG
CCTGGGCATTCGAACAATTTTAAAAAAAAAAAAAAAAAA
GH12037.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 18:20:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1146-RA | 2058 | CG1146-RA | 142..2013 | 1..1872 | 9360 | 100 | Plus |
CG1146-RB | 1879 | CG1146-RB | 196..1834 | 234..1872 | 8180 | 99.9 | Plus |
CG1146.a | 1883 | CG1146.a | 249..1883 | 238..1872 | 8175 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:18:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 2490481..2492120 | 236..1871 | 7770 | 98.5 | Plus |
chr3L | 24539361 | chr3L | 2489752..2489988 | 1..237 | 1140 | 98.7 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:45:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:18:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2490978..2492614 | 236..1872 | 8185 | 100 | Plus |
3L | 28110227 | 3L | 2490252..2490488 | 1..237 | 1185 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:59:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 2490978..2492614 | 236..1872 | 8185 | 100 | Plus |
3L | 28103327 | 3L | 2490252..2490488 | 1..237 | 1185 | 100 | Plus |
Blast to na_te.dros performed on 2019-03-16 03:18:25 has no hits.
GH12037.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:19:35 Download gff for
GH12037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 2490483..2492120 | 238..1871 | 97 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:36:56 Download gff for
GH12037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1146-RA | 1..948 | 381..1328 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:50:20 Download gff for
GH12037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1146-RA | 1..948 | 381..1328 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:56:34 Download gff for
GH12037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1146-RB | 1..948 | 381..1328 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:41:34 Download gff for
GH12037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1146-RA | 1..948 | 381..1328 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:34:44 Download gff for
GH12037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1146-RC | 1..948 | 381..1328 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:03:24 Download gff for
GH12037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1146-RA | 26..1896 | 1..1871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:50:20 Download gff for
GH12037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1146-RA | 26..1896 | 1..1871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:56:34 Download gff for
GH12037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1146-RA | 33..1903 | 1..1871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:41:35 Download gff for
GH12037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1146-RA | 26..1896 | 1..1871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:34:44 Download gff for
GH12037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1146-RA | 33..1903 | 1..1871 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:19:35 Download gff for
GH12037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2490252..2490488 | 1..237 | 100 | -> | Plus |
3L | 2490980..2492613 | 238..1871 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:19:35 Download gff for
GH12037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2490252..2490488 | 1..237 | 100 | -> | Plus |
3L | 2490980..2492613 | 238..1871 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:19:35 Download gff for
GH12037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2490252..2490488 | 1..237 | 100 | -> | Plus |
3L | 2490980..2492613 | 238..1871 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:56:34 Download gff for
GH12037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2490252..2490488 | 1..237 | 100 | -> | Plus |
arm_3L | 2490980..2492613 | 238..1871 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:12:08 Download gff for
GH12037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2490252..2490488 | 1..237 | 100 | -> | Plus |
3L | 2490980..2492613 | 238..1871 | 100 | | Plus |
GH12037.pep Sequence
Translation from 380 to 1327
> GH12037.pep
MTDYTEYVETAWKYAEWLPYLLVSYVVVTLLPKSLIRMKRFADADYEANR
NMFHRCYGPELCCHVLGQEQVAGKVKPKARKPVTRVYPKRQQVAPKAELP
PPSPAPVKRSNVTKIARMFETGNTRQVSRVAPITLPEIRMFGASDESRDS
TPCVSRKTSIASQLSAQLQHIEQTMHLWQELEEEPSKKASSHNDWEPMAV
PVPRRTRGTSATPSTASPLSSSPELEHSRSPVLLRKPPSLCLQTSMEDIF
QVIARSAEEPEDCPDCQCLSPVTSIDDILSERRFSRPLSAYSITDLLNEE
QASCIEETTYINETR*
GH12037.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:51:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF24921-PA | 314 | GF24921-PA | 1..312 | 1..314 | 1174 | 78.9 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:51:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG14867-PA | 315 | GG14867-PA | 1..315 | 1..315 | 1607 | 95.9 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:51:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH15730-PA | 323 | GH15730-PA | 1..315 | 1..315 | 851 | 59.6 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:18:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1146-PD | 315 | CG1146-PD | 1..315 | 1..315 | 1647 | 100 | Plus |
CG1146-PA | 315 | CG1146-PA | 1..315 | 1..315 | 1647 | 100 | Plus |
CG1146-PC | 315 | CG1146-PC | 1..315 | 1..315 | 1647 | 100 | Plus |
CG1146-PB | 315 | CG1146-PB | 1..315 | 1..315 | 1647 | 100 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:51:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI12786-PA | 326 | GI12786-PA | 3..318 | 2..314 | 944 | 61.3 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:51:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL11874-PA | 331 | GL11874-PA | 18..331 | 1..315 | 1216 | 77.7 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:51:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA11016-PA | 331 | GA11016-PA | 18..331 | 1..315 | 1211 | 77.4 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:51:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD13690-PA | 315 | GD13690-PA | 1..315 | 1..315 | 1626 | 97.1 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:51:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ16085-PA | 307 | GJ16085-PA | 1..299 | 1..314 | 930 | 64.1 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:51:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK12649-PA | 351 | GK12649-PA | 4..346 | 2..312 | 918 | 57.9 | Plus |
GH12037.hyp Sequence
Translation from 380 to 1327
> GH12037.hyp
MTDYTEYVETAWKYAEWLPYLLVSYVVVTLLPKSLIRMKRFADADYEANR
NMFHRCYGPELCCHVLGQEQVAGKVKPKARKPVTRVYPKRQQVAPKAELP
PPSPAPVKRSNVTKIARMFETGNTRQVSRVAPITLPEIRMFGASDESRDS
TPCVSRKTSIASQLSAQLQHIEQTMHLWQELEEEPSKKASSHNDWEPMAV
PVPRRTRGTSATPSTASPLSSSPELEHSRSPVLLRKPPSLCLQTSMEDIF
QVIARSAEEPEDCPDCQCLSPVTSIDDILSERRFSRPLSAYSITDLLNEE
QASCIEETTYINETR*
GH12037.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:27:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1146-PD | 315 | CG1146-PD | 1..315 | 1..315 | 1647 | 100 | Plus |
CG1146-PA | 315 | CG1146-PA | 1..315 | 1..315 | 1647 | 100 | Plus |
CG1146-PC | 315 | CG1146-PC | 1..315 | 1..315 | 1647 | 100 | Plus |
CG1146-PB | 315 | CG1146-PB | 1..315 | 1..315 | 1647 | 100 | Plus |