Clone GH12067 Report

Search the DGRC for GH12067

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:120
Well:67
Vector:pOT2
Associated Gene/TranscriptEnt2-RA
Protein status:GH12067.pep: gold
Preliminary Size:2200
Sequenced Size:2065

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11045 2001-01-01 Release 2 assignment
CG31911 2001-09-19 Blastp of sequenced clone
CG31911 2003-01-01 Sim4 clustering to Release 3
Ent2 2008-04-29 Release 5.5 accounting
Ent2 2008-08-15 Release 5.9 accounting
Ent2 2008-12-18 5.12 accounting

Clone Sequence Records

GH12067.complete Sequence

2065 bp (2065 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058347

> GH12067.complete
CGATAATCTTGTAGTGCGGTGCGGTTTTAACCTTTGATTGGATCTGTGTT
GTAATCAGCGCTCTTCGGGCACTGCAGTTGCGTCTCCACGTGACCACTAG
TTCCAGGCGAACCCCCCGCCACGAGGATATACCCTAATCCCGAAATCAGA
GTGCTGTCGCAGGCGCAGGGAAAATCAAACCTTCCCGCCCTCCTACCGGT
TTTGTGGCCACCGCGAAAATAACTGACCGCGCAAGTTTTCGGGTTTCAAG
CAAACGCCTCAAGCACACGCCCCAATAACTGCTGTCGCCCGCATCAGCAG
AACCAGAAAGAAATCCGAGCCAGAGCAGAACAGAAGTCGCGCAGATATGG
CGGAGGCTAAATCGGAGAAGTCGCCTTTTATTGGCAAACAGCAGGCGCCG
GTGACGTTAAATCCCTCGTGGGAATCCAAGTTGCCGCCCCATGATTCCAA
CGGCAAGGGATCAACGTCGGTGTTGGCGAAACTGGGCCTGCCAGCGCCAA
AAGATAAATTCCTTATCGTGTTCTTTATATTCCTGCTGCACGGCGTGGGC
ACGCTGATGCCATGGAACATGTTCATCACGGCCAAGTCCTATTTCGAGGA
CTTCAAGTTCGGACCAAACAACACCGTGGCCACGGAAGTGAGTTACCGCA
CCCATTTCATGCAAAATATGGGCTTTGCCTCGCAGATTCCTAACCTGGTC
TTCAACTGGCTGAACATCTTTGTCAACTTTGGCGGCGACCTGACCACCCG
AATCGTCTACAGCATCATCTTCGAAATGGTCATTCTGCTGGTTACCATTA
TTTTGGCCATGCTCGACTCCTCGCAGTGGCCGGGCGTCTTCTTCTGGACC
ACCATGGTGTGCATTGTGTTGTTAAACGTGTGCAACGGCATCTACCAGAA
CACCATATACGGAATAGTGGCATCGTTGCCCATCAAGTACACAGGCGCCG
TCGTCCTGGGCTCCAACATCAGCGGCTGCTTCACCACCGCCATGGCCTTG
ATATGCGGTGAGATCTTCTCGTCCAAGAGGACTTCGGCCATCTACTACTT
CGTGACCGCCATCCTAGTGCTGCTGCTCTGCTTCGACACGTACTTTGCGC
TGCCGCTGAACAAGTTCTTCCGGCACTACGAGACCATTAGCCGGAGCAGC
GAAAAGAAATCTGATTCTAAGGCCCAGCTGAACGTGCCTTACTGGCAGAT
CTTCAAGAAAGCAGCGCCCCAACTATTCAACATCTTCCTCACGTTTTTCG
TCACGTTGTCGGTTTTCCCGGCGATTCAGTCGAACGTGCACCGCTCCGAC
CCAAATTTCGTAGTAGGCCCGGACTACTTTACACTGGTCACTTGCTTCGC
GACCTTTAACGTCTTCGCAATGCTGGGCAGTTTAACCACATCGTGGGTGC
AATGGCCGGGTCCGAGGTTCCTCTGGGTGCCAGTGGTCTTGCGTCTGGCG
TTCATCCCCTTGTTTGTCATGTGCAACTACGTTCCGCCGGACTCGGTGCG
CTCATTGGCCGTATTCATCGAGAACGATTGGGTGTACTGGGGCATCGGCA
TCGCAATGGCCTACAGCTCCGGGTATCTCAGCTCTCTGGGCATGATGTAC
GCCCCGCAGACGGTGCACACCAAATACCAGACCACTGCCGGAATGTACGC
AGCTGCCATGCTGATCACGGGCATCTTCTCCGGAGTGCTGTTCTCGTATC
TGGGACCATTTTTCGTCGTGTAGTCTTACATTTATTAGTATGACGCTTAC
TAACAATTTTCATTGTTCATTGCATTGCATTATTTGACACATTTTAAATT
TAGTTTTGTGCTCAATACCAGTTCCGGGACCTGGCCATTTGGTTTCGTCT
TAACCAATTAATTATATTCTTTTCATTTAATAAAGGTTTTACTTTTCATT
TTAATAATATGGTGTCTAATATTTCATAGTTAGACTGCACACACATAAAT
TTAGTTTTGCGCTCAATTCTAGTTCTAGGACTAATCAATCATTTTAACAC
GTTTTATTTAATAAAGTTTTTCAATTTGTATTTTATTACATCAACGAAAA
AAAAAAAAAAAAAAA

GH12067.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:15:43
Subject Length Description Subject Range Query Range Score Percent Strand
Ent2-RA 2079 Ent2-RA 34..2079 1..2046 10230 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:40:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6561330..6563375 1..2046 10170 99.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:45:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:40:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6562351..6564399 1..2049 10245 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:39:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6562351..6564399 1..2049 10245 100 Plus
Blast to na_te.dros performed 2019-03-16 07:40:52
Subject Length Description Subject Range Query Range Score Percent Strand
Ivk 5402 Ivk IVK 5402bp 4479..4542 445..384 116 70.8 Minus

GH12067.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:42:03 Download gff for GH12067.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6561330..6563375 1..2046 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:37:05 Download gff for GH12067.complete
Subject Subject Range Query Range Percent Splice Strand
Ent2-RA 1..1377 347..1723 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:57:19 Download gff for GH12067.complete
Subject Subject Range Query Range Percent Splice Strand
Ent2-RA 1..1377 347..1723 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:02:12 Download gff for GH12067.complete
Subject Subject Range Query Range Percent Splice Strand
Ent2-RB 1..1377 347..1723 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:26:33 Download gff for GH12067.complete
Subject Subject Range Query Range Percent Splice Strand
Ent2-RA 1..1377 347..1723 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:39:12 Download gff for GH12067.complete
Subject Subject Range Query Range Percent Splice Strand
Ent2-RB 1..1377 347..1723 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:43:34 Download gff for GH12067.complete
Subject Subject Range Query Range Percent Splice Strand
Ent2-RA 34..2079 1..2046 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:57:19 Download gff for GH12067.complete
Subject Subject Range Query Range Percent Splice Strand
Ent2-RA 34..2079 1..2046 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:12 Download gff for GH12067.complete
Subject Subject Range Query Range Percent Splice Strand
Ent2-RB 27..2072 1..2046 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:26:33 Download gff for GH12067.complete
Subject Subject Range Query Range Percent Splice Strand
Ent2-RA 1..2046 1..2046 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:39:12 Download gff for GH12067.complete
Subject Subject Range Query Range Percent Splice Strand
Ent2-RB 27..2072 1..2046 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:42:03 Download gff for GH12067.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6562351..6564396 1..2046 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:42:03 Download gff for GH12067.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6562351..6564396 1..2046 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:42:03 Download gff for GH12067.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6562351..6564396 1..2046 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:12 Download gff for GH12067.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6562351..6564396 1..2046 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:03:44 Download gff for GH12067.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6562351..6564396 1..2046 100   Plus

GH12067.hyp Sequence

Translation from 346 to 1722

> GH12067.hyp
MAEAKSEKSPFIGKQQAPVTLNPSWESKLPPHDSNGKGSTSVLAKLGLPA
PKDKFLIVFFIFLLHGVGTLMPWNMFITAKSYFEDFKFGPNNTVATEVSY
RTHFMQNMGFASQIPNLVFNWLNIFVNFGGDLTTRIVYSIIFEMVILLVT
IILAMLDSSQWPGVFFWTTMVCIVLLNVCNGIYQNTIYGIVASLPIKYTG
AVVLGSNISGCFTTAMALICGEIFSSKRTSAIYYFVTAILVLLLCFDTYF
ALPLNKFFRHYETISRSSEKKSDSKAQLNVPYWQIFKKAAPQLFNIFLTF
FVTLSVFPAIQSNVHRSDPNFVVGPDYFTLVTCFATFNVFAMLGSLTTSW
VQWPGPRFLWVPVVLRLAFIPLFVMCNYVPPDSVRSLAVFIENDWVYWGI
GIAMAYSSGYLSSLGMMYAPQTVHTKYQTTAGMYAAAMLITGIFSGVLFS
YLGPFFVV*

GH12067.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:28:25
Subject Length Description Subject Range Query Range Score Percent Strand
Ent2-PA 458 CG31911-PA 1..458 1..458 2413 100 Plus
Ent2-PB 458 CG31911-PB 1..458 1..458 2413 100 Plus
Ent1-PC 476 CG11907-PC 58..469 51..450 372 25.2 Plus
Ent1-PB 476 CG11907-PB 58..469 51..450 372 25.2 Plus
Ent1-PA 476 CG11907-PA 58..469 51..450 372 25.2 Plus

GH12067.pep Sequence

Translation from 346 to 1722

> GH12067.pep
MAEAKSEKSPFIGKQQAPVTLNPSWESKLPPHDSNGKGSTSVLAKLGLPA
PKDKFLIVFFIFLLHGVGTLMPWNMFITAKSYFEDFKFGPNNTVATEVSY
RTHFMQNMGFASQIPNLVFNWLNIFVNFGGDLTTRIVYSIIFEMVILLVT
IILAMLDSSQWPGVFFWTTMVCIVLLNVCNGIYQNTIYGIVASLPIKYTG
AVVLGSNISGCFTTAMALICGEIFSSKRTSAIYYFVTAILVLLLCFDTYF
ALPLNKFFRHYETISRSSEKKSDSKAQLNVPYWQIFKKAAPQLFNIFLTF
FVTLSVFPAIQSNVHRSDPNFVVGPDYFTLVTCFATFNVFAMLGSLTTSW
VQWPGPRFLWVPVVLRLAFIPLFVMCNYVPPDSVRSLAVFIENDWVYWGI
GIAMAYSSGYLSSLGMMYAPQTVHTKYQTTAGMYAAAMLITGIFSGVLFS
YLGPFFVV*

GH12067.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:23:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14172-PA 455 GF14172-PA 1..455 1..458 1959 79.3 Plus
Dana\GF24827-PA 481 GF24827-PA 63..474 51..450 321 26.7 Plus
Dana\GF23579-PA 673 GF23579-PA 47..263 50..273 159 25.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10421-PA 457 GG10421-PA 1..457 1..457 2226 90.8 Plus
Dere\GG24654-PA 476 GG24654-PA 58..469 51..450 314 25.6 Plus
Dere\GG15604-PA 668 GG15604-PA 47..263 50..273 166 26.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13844-PA 458 GH13844-PA 1..456 1..457 1640 70.8 Plus
Dgri\GH11145-PA 492 GH11145-PA 66..485 50..450 282 23.2 Plus
Dgri\GH17074-PA 660 GH17074-PA 12..256 30..273 159 24.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:04:23
Subject Length Description Subject Range Query Range Score Percent Strand
Ent2-PA 458 CG31911-PA 1..458 1..458 2413 100 Plus
Ent2-PB 458 CG31911-PB 1..458 1..458 2413 100 Plus
Ent1-PC 476 CG11907-PC 58..469 51..450 372 25.2 Plus
Ent1-PB 476 CG11907-PB 58..469 51..450 372 25.2 Plus
Ent1-PA 476 CG11907-PA 58..469 51..450 372 25.2 Plus
Ent3-PB 667 CG11010-PB 47..252 50..266 177 25.8 Plus
Ent3-PC 668 CG11010-PC 47..252 50..266 177 25.8 Plus
Ent3-PA 668 CG11010-PA 47..252 50..266 177 25.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:23:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20368-PA 454 GI20368-PA 1..452 1..457 1526 69.5 Plus
Dmoj\GI17852-PA 464 GI17852-PA 2..457 12..450 327 24.2 Plus
Dmoj\GI11668-PA 657 GI11668-PA 12..254 30..275 159 24.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:23:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25678-PA 455 GL25678-PA 1..455 1..457 1934 81.4 Plus
Dper\GL19271-PA 482 GL19271-PA 62..475 51..450 301 25.7 Plus
Dper\GL22686-PA 234 GL22686-PA 43..227 50..246 147 23.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:23:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16558-PA 455 GA16558-PA 1..455 1..457 1938 81.7 Plus
Dpse\GA11273-PA 482 GA11273-PA 62..475 51..450 300 25.5 Plus
Dpse\GA10708-PA 678 GA10708-PA 43..259 50..273 153 24.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:23:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16179-PA 458 GM16179-PA 1..458 1..458 2403 99.1 Plus
Dsec\GM16673-PA 476 GM16673-PA 58..469 51..450 343 26.6 Plus
Dsec\GM25377-PA 668 GM25377-PA 25..263 32..273 165 25.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:23:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23420-PA 458 GD23420-PA 1..458 1..458 2405 99.3 Plus
Dsim\GD22962-PA 476 GD22962-PA 58..469 51..450 341 26.6 Plus
Dsim\GD14411-PA 668 GD14411-PA 47..263 50..273 164 26.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:23:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13720-PA 456 GJ13720-PA 1..454 1..457 1588 70.4 Plus
Dvir\GJ17347-PA 488 GJ17347-PA 68..481 50..450 316 25.3 Plus
Dvir\GJ11346-PA 657 GJ11346-PA 40..256 50..273 163 25.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:23:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15325-PA 453 GK15325-PA 1..453 1..457 1607 70.1 Plus
Dwil\GK23885-PA 482 GK23885-PA 67..475 59..450 298 24.9 Plus
Dwil\GK16831-PA 752 GK16831-PA 103..319 50..273 154 25 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13988-PA 458 GE13988-PA 1..458 1..458 2312 95.2 Plus
Dyak\GE16173-PA 476 GE16173-PA 58..469 51..450 327 26.1 Plus
Dyak\GE21931-PA 668 GE21931-PA 47..263 50..273 165 26.2 Plus