Clone GH12158 Report

Search the DGRC for GH12158

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:121
Well:58
Vector:pOT2
Associated Gene/TranscriptCG10841-RA
Protein status:GH12158.pep: gold
Preliminary Size:3700
Sequenced Size:2392

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10841 2001-01-01 Release 2 assignment
CG10841 2001-09-19 Blastp of sequenced clone
CG10841 2003-01-01 Sim4 clustering to Release 3
CG10841 2008-04-29 Release 5.5 accounting
CG10841 2008-08-15 Release 5.9 accounting
CG10841 2008-12-18 5.12 accounting

Clone Sequence Records

GH12158.complete Sequence

2392 bp (2392 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058348

> GH12158.complete
CTTTTAAGGAGTTTTGTAAACATTTTCCACATATTGTGCTGCAAATCGAA
AAATAAAAAATCCGAAAAAAGTTTTTACCAAACCAAGATGCATTCGACCA
AGATTAAAGAGGGTGATGACAGAGAGGAGATGGAGCTAAATCAAATCTGG
CGAGGATGTCGTAAAATCCAGGGCGCCATTTTTCGTTATAACTTTGACAT
CTGCGCCGACTTAAAGCAGCATGATCCCTGTTGCAGTGGCTTCGTGTCCG
AGCCCATTTTCACCGCCGTGCTGGGCAAGTATCGCAAGGTGGCCGGATTG
TCCGAGTCGGAACTCCGGGATGTCACTGACTATTTCCAAATTCGAGATGG
ACGCGTAGCGTATCGTCAGTTCTGCAAGGTCGTCTGCAGCGAAACACTGC
ATAAGACCGCCAAAAGTGATCTAGCTACGGGACTGGAGTGGAACGATCCC
TGGCATGTGAATGTTGTACCCCAGCCGGAGGATCGACGACGTCTCTGCCT
GATCCTGCTCAAGATTGCCCAACTATGCAATATTCCGCTCATGCCCTACT
TTCAGGACTACGAACTAATTGCACAAAATGTTGGAGTTGTTACCGTTGCG
CACTTTTCTCGTGTGCTGCACTTTATGAAGATACCACTTTCGGAGTCCGA
TTTTCTGCTCCTCCTCAGACGCTATATGAAGGATGGTTACCTGGTCAACT
ATGTGGCTTTCCTCAAGCACATCGATAATATTATAGCATACCTGGGCGAG
CATCATCTGCTGGACAACTCACATGATATTATCAAGGACTTTCCGGGACG
TTTAGTGGACCTAGAACTTTCCCAACTGCCAGCTATTGATGGTTGCAAGG
CAGTGCATCCAATCTTTCCCGATGCCTGCAGTACACCCAAAAAGAATCGA
AATCAGTGCGACATTCTGTTCTGCATTCAGAACTACATCTACAAGAACCA
AGTGCGCACCTCCGAGTTCCTAGAGTGCTATGACAGCCTAAACGTGGGCA
GCATCACCAAGAATCAATTTGAGCGCGGTCTATCGAACATGGGAGTGGGA
AAATATCTGACCCAAAGGGAAATGTCCATTCTGCTGGAACGCTACACTGA
TCCCGTGGATATCAATCGAGTGCGTTGGCGCAATTTCGCTGATGAGATCG
ATACAGTATTCACCATTAAGAACCTGGAGAAGATGCCACAGTGTGTCGTG
GAATCGCCACTTCGTCACATCCAGGAGTTGCCCAGACCCGGCGCCGTGCC
CTGGGAGTCTGTGTCGGCTAATGTTCGTGATCTGTGTGAGGATGCCATGG
CCAAGATTAAGATACGCATCCGCAATCGTCGCCTCTATCTGCATCCATTC
TTCCGAAGCTACGATAAACTCAACAGTGGACATGTGCGTTGCAACATTAC
CAAGCAGATTTTTCGCACCAATGGCATCCTTCTGTCCGATCCGGAGCAGG
ACTCTGTGCTGAGTCGGTATGGAAACGAGCTGGGCTTTTGCTACACCAAG
TTTTTGGACGACGTCGATCCGGCGGAGTATGCCATGCCAGCGCTGGTCAC
CAAGCAGCAACTGGTGGAGTGTCCACCGTTTGCGAGAGACAATTTGGATC
CCGAGGATGTCAGCGAGGAGGTGATCGTGCGCATCCTTACGAACGCCAAG
CGACAGGCTGTGGTCAAGAGCGTGGCCGTCATCGAGTTCATGAAGGACTA
CGATCGCCATCGCGAGGGCGAGATCCTTGAATCGGACTTCAAGCGAGCCC
TGGATAACTCAAGTGTAATCATCAAGGAAGAGGAAGCTAACATCTTGTGC
AACATCTTCCGTTCACCGAATCGCGTGTCCTGCATTCGCTATCGCGATTT
CTGCAAGGCCCTCGACGAGATCTTCATCCAACTGGACACGAACATGGGTG
ACCAGGTGGTGACCGCCGTGCCACTGCTCCATTTGCCCAATCTGGACTGC
GTCGACTGCTTCCTGAGCTTCGACGAGCGAACCATCTGCTCGCAGGCCCT
GATGAAGTTGGCCCGCAAACCGGACGAGATCTCCAATCTGAGTCAGCTGT
TCAAGGACTTCGATCGCGAACAGTGCGGCTCGATCACGCAGAATCAATTC
CTGCGCGGCATCACGGTGCGCGACATGCATGTAATGCTGAGCAGCCGCGA
GTTCCAAGCGATCTGCAAGTGCTTCGGCGTGAAGAAGGGCATGTGCATGG
AGTTCAACTACCGGGAGTTCCTGAAAATCCTCGACGTGCTCTTTGCCACC
GGTCAAATGAAGCGCAACTATTAGTGGCGCGAAAACTAACCCTCTCCAAA
TTCCAAGTGTATCATTTGTCCAAATTTTTGAATGTTATCAGTAAAATAAA
AAAAACAATTGGTGGATTCTTTTAAAAAAAAAAAAAAAAAAA

GH12158.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:22:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG10841.a 2864 CG10841.a 159..2533 1..2375 11875 100 Plus
CG10841-RA 2538 CG10841-RA 159..2533 1..2375 11875 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 9459206..9459773 1806..2373 2795 99.5 Plus
chr3R 27901430 chr3R 9458707..9459144 1368..1805 2160 99.5 Plus
chr3R 27901430 chr3R 9457992..9458373 775..1156 1910 100 Plus
chr3R 27901430 chr3R 9458436..9458648 1155..1367 1065 100 Plus
chr3R 27901430 chr3R 9457724..9457931 568..775 1010 99 Plus
chr3R 27901430 chr3R 9457491..9457662 395..566 845 99.4 Plus
chr3R 27901430 chr3R 9457287..9457431 250..394 725 100 Plus
chr3R 27901430 chr3R 9457088..9457214 124..250 635 100 Plus
chr3R 27901430 chr3R 9456888..9457011 1..124 620 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:46:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:24:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13634294..13634863 1806..2375 2850 100 Plus
3R 32079331 3R 13633795..13634232 1368..1805 2190 100 Plus
3R 32079331 3R 13633079..13633460 775..1156 1910 100 Plus
3R 32079331 3R 13633523..13633735 1155..1367 1065 100 Plus
3R 32079331 3R 13632811..13633018 568..775 1040 100 Plus
3R 32079331 3R 13632578..13632750 395..567 865 100 Plus
3R 32079331 3R 13632374..13632518 250..394 725 100 Plus
3R 32079331 3R 13632175..13632301 124..250 635 100 Plus
3R 32079331 3R 13631975..13632098 1..124 620 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:45:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 13375125..13375694 1806..2375 2850 100 Plus
3R 31820162 3R 13374626..13375063 1368..1805 2190 100 Plus
3R 31820162 3R 13373910..13374291 775..1156 1910 100 Plus
3R 31820162 3R 13374354..13374566 1155..1367 1065 100 Plus
3R 31820162 3R 13373642..13373849 568..775 1040 100 Plus
3R 31820162 3R 13373409..13373581 395..567 865 100 Plus
3R 31820162 3R 13373205..13373349 250..394 725 100 Plus
3R 31820162 3R 13373006..13373132 124..250 635 100 Plus
3R 31820162 3R 13372806..13372929 1..124 620 100 Plus
Blast to na_te.dros performed on 2019-03-15 19:24:04 has no hits.

GH12158.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:25:12 Download gff for GH12158.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 9457288..9457431 251..394 100 -> Plus
chr3R 9457491..9457663 395..567 98 -> Plus
chr3R 9457724..9457930 568..774 99 -> Plus
chr3R 9456888..9457010 1..123 100 -> Plus
chr3R 9457088..9457214 124..250 100 -> Plus
chr3R 9457992..9458373 775..1156 100 -> Plus
chr3R 9458438..9458648 1157..1367 100 -> Plus
chr3R 9458707..9459144 1368..1805 99 -> Plus
chr3R 9459206..9459773 1806..2373 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:37:16 Download gff for GH12158.complete
Subject Subject Range Query Range Percent Splice Strand
CG10841-RA 1..2187 88..2274 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:07:33 Download gff for GH12158.complete
Subject Subject Range Query Range Percent Splice Strand
CG10841-RA 1..2187 88..2274 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:49:43 Download gff for GH12158.complete
Subject Subject Range Query Range Percent Splice Strand
CG10841-RA 1..2187 88..2274 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:38:18 Download gff for GH12158.complete
Subject Subject Range Query Range Percent Splice Strand
CG10841-RA 1..2187 88..2274 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:16:41 Download gff for GH12158.complete
Subject Subject Range Query Range Percent Splice Strand
CG10841-RA 1..2187 88..2274 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:57:39 Download gff for GH12158.complete
Subject Subject Range Query Range Percent Splice Strand
CG10841-RA 34..2406 1..2373 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:07:33 Download gff for GH12158.complete
Subject Subject Range Query Range Percent Splice Strand
CG10841-RA 34..2406 1..2373 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:49:43 Download gff for GH12158.complete
Subject Subject Range Query Range Percent Splice Strand
CG10841-RA 34..2406 1..2373 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:38:19 Download gff for GH12158.complete
Subject Subject Range Query Range Percent Splice Strand
CG10841-RA 34..2406 1..2373 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:16:41 Download gff for GH12158.complete
Subject Subject Range Query Range Percent Splice Strand
CG10841-RA 34..2406 1..2373 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:25:12 Download gff for GH12158.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13632375..13632518 251..394 100 -> Plus
3R 13632578..13632750 395..567 100 -> Plus
3R 13632811..13633017 568..774 100 -> Plus
3R 13633079..13633460 775..1156 100 -> Plus
3R 13633525..13633735 1157..1367 100 -> Plus
3R 13633795..13634232 1368..1805 100 -> Plus
3R 13634294..13634861 1806..2373 100   Plus
3R 13631975..13632097 1..123 100 -> Plus
3R 13632175..13632301 124..250 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:25:12 Download gff for GH12158.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13632375..13632518 251..394 100 -> Plus
3R 13632578..13632750 395..567 100 -> Plus
3R 13632811..13633017 568..774 100 -> Plus
3R 13633079..13633460 775..1156 100 -> Plus
3R 13633525..13633735 1157..1367 100 -> Plus
3R 13633795..13634232 1368..1805 100 -> Plus
3R 13634294..13634861 1806..2373 100   Plus
3R 13631975..13632097 1..123 100 -> Plus
3R 13632175..13632301 124..250 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:25:12 Download gff for GH12158.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13632375..13632518 251..394 100 -> Plus
3R 13632578..13632750 395..567 100 -> Plus
3R 13632811..13633017 568..774 100 -> Plus
3R 13633079..13633460 775..1156 100 -> Plus
3R 13633525..13633735 1157..1367 100 -> Plus
3R 13633795..13634232 1368..1805 100 -> Plus
3R 13634294..13634861 1806..2373 100   Plus
3R 13631975..13632097 1..123 100 -> Plus
3R 13632175..13632301 124..250 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:49:43 Download gff for GH12158.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9459247..9459457 1157..1367 100 -> Plus
arm_3R 9458300..9458472 395..567 100 -> Plus
arm_3R 9458533..9458739 568..774 100 -> Plus
arm_3R 9458801..9459182 775..1156 100 -> Plus
arm_3R 9457697..9457819 1..123 100 -> Plus
arm_3R 9457897..9458023 124..250 100 -> Plus
arm_3R 9458097..9458240 251..394 100 -> Plus
arm_3R 9459517..9459954 1368..1805 100 -> Plus
arm_3R 9460016..9460583 1806..2373 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:15:39 Download gff for GH12158.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13372806..13372928 1..123 100 -> Plus
3R 13373006..13373132 124..250 100 -> Plus
3R 13373206..13373349 251..394 100 -> Plus
3R 13373409..13373581 395..567 100 -> Plus
3R 13374356..13374566 1157..1367 100 -> Plus
3R 13373642..13373848 568..774 100 -> Plus
3R 13373910..13374291 775..1156 100 -> Plus
3R 13374626..13375063 1368..1805 100 -> Plus
3R 13375125..13375692 1806..2373 100   Plus

GH12158.hyp Sequence

Translation from 1 to 2273

> GH12158.hyp
LLRSFVNIFHILCCKSKNKKSEKSFYQTKMHSTKIKEGDDREEMELNQIW
RGCRKIQGAIFRYNFDICADLKQHDPCCSGFVSEPIFTAVLGKYRKVAGL
SESELRDVTDYFQIRDGRVAYRQFCKVVCSETLHKTAKSDLATGLEWNDP
WHVNVVPQPEDRRRLCLILLKIAQLCNIPLMPYFQDYELIAQNVGVVTVA
HFSRVLHFMKIPLSESDFLLLLRRYMKDGYLVNYVAFLKHIDNIIAYLGE
HHLLDNSHDIIKDFPGRLVDLELSQLPAIDGCKAVHPIFPDACSTPKKNR
NQCDILFCIQNYIYKNQVRTSEFLECYDSLNVGSITKNQFERGLSNMGVG
KYLTQREMSILLERYTDPVDINRVRWRNFADEIDTVFTIKNLEKMPQCVV
ESPLRHIQELPRPGAVPWESVSANVRDLCEDAMAKIKIRIRNRRLYLHPF
FRSYDKLNSGHVRCNITKQIFRTNGILLSDPEQDSVLSRYGNELGFCYTK
FLDDVDPAEYAMPALVTKQQLVECPPFARDNLDPEDVSEEVIVRILTNAK
RQAVVKSVAVIEFMKDYDRHREGEILESDFKRALDNSSVIIKEEEANILC
NIFRSPNRVSCIRYRDFCKALDEIFIQLDTNMGDQVVTAVPLLHLPNLDC
VDCFLSFDERTICSQALMKLARKPDEISNLSQLFKDFDREQCGSITQNQF
LRGITVRDMHVMLSSREFQAICKCFGVKKGMCMEFNYREFLKILDVLFAT
GQMKRNY*

GH12158.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:29:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG10841-PA 728 CG10841-PA 1..728 30..757 3850 100 Plus
CG10841-PB 727 CG10841-PB 1..727 30..757 3833 99.9 Plus

GH12158.pep Sequence

Translation from 87 to 2273

> GH12158.pep
MHSTKIKEGDDREEMELNQIWRGCRKIQGAIFRYNFDICADLKQHDPCCS
GFVSEPIFTAVLGKYRKVAGLSESELRDVTDYFQIRDGRVAYRQFCKVVC
SETLHKTAKSDLATGLEWNDPWHVNVVPQPEDRRRLCLILLKIAQLCNIP
LMPYFQDYELIAQNVGVVTVAHFSRVLHFMKIPLSESDFLLLLRRYMKDG
YLVNYVAFLKHIDNIIAYLGEHHLLDNSHDIIKDFPGRLVDLELSQLPAI
DGCKAVHPIFPDACSTPKKNRNQCDILFCIQNYIYKNQVRTSEFLECYDS
LNVGSITKNQFERGLSNMGVGKYLTQREMSILLERYTDPVDINRVRWRNF
ADEIDTVFTIKNLEKMPQCVVESPLRHIQELPRPGAVPWESVSANVRDLC
EDAMAKIKIRIRNRRLYLHPFFRSYDKLNSGHVRCNITKQIFRTNGILLS
DPEQDSVLSRYGNELGFCYTKFLDDVDPAEYAMPALVTKQQLVECPPFAR
DNLDPEDVSEEVIVRILTNAKRQAVVKSVAVIEFMKDYDRHREGEILESD
FKRALDNSSVIIKEEEANILCNIFRSPNRVSCIRYRDFCKALDEIFIQLD
TNMGDQVVTAVPLLHLPNLDCVDCFLSFDERTICSQALMKLARKPDEISN
LSQLFKDFDREQCGSITQNQFLRGITVRDMHVMLSSREFQAICKCFGVKK
GMCMEFNYREFLKILDVLFATGQMKRNY*

GH12158.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:59:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17606-PA 689 GF17606-PA 1..686 1..686 3299 88.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:59:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19766-PA 728 GG19766-PA 1..728 1..728 3839 97.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18526-PA 729 GH18526-PA 3..729 2..728 3122 77.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG10841-PA 728 CG10841-PA 1..728 1..728 3850 100 Plus
CG10841-PB 727 CG10841-PB 1..727 1..728 3833 99.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22063-PA 728 GI22063-PA 1..728 1..728 3094 76.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:59:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23541-PA 728 GL23541-PA 1..728 1..728 3414 85.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10590-PA 728 GA10590-PA 1..728 1..728 3429 86 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24116-PA 728 GM24116-PA 1..728 1..728 3892 99.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:59:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18915-PA 728 GD18915-PA 1..728 1..728 3891 99 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:59:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24111-PA 728 GJ24111-PA 1..728 1..728 3140 78.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13946-PA 728 GK13946-PA 1..728 1..728 3288 82 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26282-PA 728 GE26282-PA 1..728 1..728 3841 97.3 Plus