Clone GH12207 Report

Search the DGRC for GH12207

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:122
Well:7
Vector:pOT2
Associated Gene/TranscriptFmo-2-RA
Protein status:GH12207.pep: gold
Preliminary Size:2200
Sequenced Size:1663

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3174 2001-01-01 Release 2 assignment
CG3174 2001-09-19 Blastp of sequenced clone
CG3174 2003-01-01 Sim4 clustering to Release 3
Fmo-2 2008-04-29 Release 5.5 accounting
Fmo-2 2008-08-15 Release 5.9 accounting
Fmo-2 2008-12-18 5.12 accounting

Clone Sequence Records

GH12207.complete Sequence

1663 bp (1663 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058349

> GH12207.complete
AGGCGAGGAGTTAGACGTGTTAGAGGAAAAAGAAACTTTTAAAATTTGCT
ACCAATTGGGAATCCCAAAATGATCAAAACTTCAGTGGACAAGCGTCGTG
TTTGCGTAATAGGAGCTGGAACAGCGGGGTTGTGCGCGCTGAAGAACTCC
CTGGAAGCGGGTCTGGATGCGGTGGCCTACGAACGAGGCACCGAAATCGG
AGGAACATGGATTTTCTCCGAGGAAATGCCCAAGGACGAGTACGACGAGG
TGCACAGCAGCATGTACGAAGGCCTGCGCACCAATCTTCCAAAGGAGGTC
ATGGGCTATCCGGACTACTCGTACCCCGACGATATCACCGAGTCTTTCAT
CACCTCCAACCAGGTGCTAGAATTTCTGCGCTCCTACGCGGAACACTTCA
AGCTAAAGGCCCACATCAAGCTCCAGCACGAGGTGATAAGAGTGCGTCCT
CGCTTGGACGACTGGGAGGTCTACGTATGGGACCACAGCACGGATACCTG
TGACCCAGTCTACTACGACTTCGTTTATGTCTGCAACGGGCACTACACGG
AACCGGACCTCCCGGAAGTCGAGGGATTAGATCTGTTCGAGGGCAACAAG
ATGCACAGCCACCTCTACCGCAAGGCAGATAAGTTTAAAGACGCGCGTGT
GCTGATCATTGGCGCCGGCCCCAGTGGCATGGACATCACCAACCATGTTC
GCTTGGCTGCCAAGCAGGTCTTCCTAAGCCACCACCTTTCCACGACCCCT
AACACAGCATTCATGGGCAACGTAACGCAGAAGCCGGATGTGAAACGCTT
CACAAAGGATGGAGCCGTCTTCACGGACGGCAGCACGGAGAGCTTTGACC
ACGTGATGTTCTGCACCGGCTACAAGTACACATTCCCCTGCCTCAGCACC
GATGTGGGTGTCCAGGTGATAGACAACTTCGTGCAGCCACTGTGGAAGCA
CTGCATCAACATCAACCACCCGACCATGGCCTTTGTGGGCCTGCCCTTCA
ACGTGATTCCCACCCACATCTTCGACATGCAGGTGCGCTTCACGCTGAAG
TTCTTCACAGGTCAGCGGAAGTTTCCCTCCCGGGAGCAGATGATTGCCGA
TCTGGAGCAGGAGATCGGAGAGCGGTGGGGCTGCGGCGTGCGCAACCAGA
AGAAAGCACATCAGATGGGCGAGCGACAGTTTGTCTACTACAATGAACTG
GCCAGTATCGCGGGCATCGAGAACATCAAGCCAGTTATCCACAAGCTAAT
GAAGGACTGCGGCAAGAAGTACATTTTTGAATTGGACACGTACAGGAGCA
ACAAGTATACGATTTTGGACGATGAAAACTTTTTGAAGAACGGAGAAGCT
ATTGTATGATGAACCTGATTTCATCCCATTCTAATATCTTACGTTAGGCG
ATAAAAAGTGTTTCACTGTAGTACACGAAGATTTAGCGGACTCTTCGGTT
CGGATTCTTTTAACGGATTATAACTCAGATGTGTTAATTAATATTTTATA
AGAACAATGTAAATCAAAGTATGTTTTGAACGATTAATTCAAAACGTTTA
TTTGCTAACCAGGAGTATATCTGATAATGTCCACCATAGCTCTTTAATTC
TAAGCCTCGTAGAATTGTAGAAGTCAAATTAAAATCTTACTCCCGAAAAA
AAAAAAAAAAAAA

GH12207.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:23:19
Subject Length Description Subject Range Query Range Score Percent Strand
Fmo-2.a 3137 Fmo-2.a 1473..3119 1..1647 8235 100 Plus
Fmo-2-RA 1911 Fmo-2-RA 247..1893 1..1647 8235 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:19:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 2530202..2530746 1179..635 2710 99.8 Minus
chr2R 21145070 chr2R 2529617..2530085 1645..1177 2345 100 Minus
chr2R 21145070 chr2R 2531691..2531883 470..278 965 100 Minus
chr2R 21145070 chr2R 2531411..2531584 640..467 870 100 Minus
chr2R 21145070 chr2R 2531941..2532105 278..114 825 100 Minus
chr2R 21145070 chr2R 2532165..2532279 115..1 575 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:46:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:19:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6643003..6643547 1179..635 2710 99.8 Minus
2R 25286936 2R 6642416..6642886 1647..1177 2355 100 Minus
2R 25286936 2R 6644492..6644684 470..278 965 100 Minus
2R 25286936 2R 6644212..6644385 640..467 870 100 Minus
2R 25286936 2R 6644742..6644906 278..114 825 100 Minus
2R 25286936 2R 6644966..6645080 115..1 575 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:46:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 6644202..6644746 1179..635 2710 99.8 Minus
2R 25260384 2R 6643615..6644085 1647..1177 2355 100 Minus
2R 25260384 2R 6645691..6645883 470..278 965 100 Minus
2R 25260384 2R 6645411..6645584 640..467 870 100 Minus
2R 25260384 2R 6645941..6646105 278..114 825 100 Minus
2R 25260384 2R 6646165..6646279 115..1 575 100 Minus
Blast to na_te.dros performed 2019-03-16 20:19:54
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1b 5171 Rt1b RT1B 5150bp 1327..1457 138..268 115 57.5 Plus

GH12207.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:20:38 Download gff for GH12207.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 2529617..2530082 1180..1645 100 <- Minus
chr2R 2530202..2530740 641..1179 100 <- Minus
chr2R 2531411..2531582 469..640 100 <- Minus
chr2R 2531693..2531882 279..468 100 <- Minus
chr2R 2531941..2532103 116..278 100 <- Minus
chr2R 2532165..2532279 1..115 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:37:23 Download gff for GH12207.complete
Subject Subject Range Query Range Percent Splice Strand
Fmo-2-RA 1..1290 70..1359 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:08:13 Download gff for GH12207.complete
Subject Subject Range Query Range Percent Splice Strand
Fmo-2-RA 1..1290 70..1359 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:53:35 Download gff for GH12207.complete
Subject Subject Range Query Range Percent Splice Strand
Fmo-2-RA 1..1290 70..1359 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:38:55 Download gff for GH12207.complete
Subject Subject Range Query Range Percent Splice Strand
Fmo-2-RA 1..1290 70..1359 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:59:17 Download gff for GH12207.complete
Subject Subject Range Query Range Percent Splice Strand
Fmo-2-RA 1..1290 70..1359 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:58:30 Download gff for GH12207.complete
Subject Subject Range Query Range Percent Splice Strand
Fmo-2-RA 1..1645 1..1645 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:08:13 Download gff for GH12207.complete
Subject Subject Range Query Range Percent Splice Strand
Fmo-2-RA 1..1645 1..1645 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:53:35 Download gff for GH12207.complete
Subject Subject Range Query Range Percent Splice Strand
Fmo-2-RA 19..1663 1..1645 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:38:55 Download gff for GH12207.complete
Subject Subject Range Query Range Percent Splice Strand
Fmo-2-RA 1..1645 1..1645 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:17 Download gff for GH12207.complete
Subject Subject Range Query Range Percent Splice Strand
Fmo-2-RA 19..1663 1..1645 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:20:38 Download gff for GH12207.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6644212..6644383 469..640 100 <- Minus
2R 6644494..6644683 279..468 100 <- Minus
2R 6644742..6644904 116..278 100 <- Minus
2R 6643003..6643541 641..1179 100 <- Minus
2R 6642418..6642883 1180..1645 100 <- Minus
2R 6644966..6645080 1..115 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:20:38 Download gff for GH12207.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6644212..6644383 469..640 100 <- Minus
2R 6644494..6644683 279..468 100 <- Minus
2R 6644742..6644904 116..278 100 <- Minus
2R 6643003..6643541 641..1179 100 <- Minus
2R 6642418..6642883 1180..1645 100 <- Minus
2R 6644966..6645080 1..115 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:20:38 Download gff for GH12207.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6644212..6644383 469..640 100 <- Minus
2R 6644494..6644683 279..468 100 <- Minus
2R 6644742..6644904 116..278 100 <- Minus
2R 6643003..6643541 641..1179 100 <- Minus
2R 6642418..6642883 1180..1645 100 <- Minus
2R 6644966..6645080 1..115 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:53:35 Download gff for GH12207.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2529923..2530388 1180..1645 100 <- Minus
arm_2R 2530508..2531046 641..1179 100 <- Minus
arm_2R 2531717..2531888 469..640 100 <- Minus
arm_2R 2531999..2532188 279..468 100 <- Minus
arm_2R 2532247..2532409 116..278 100 <- Minus
arm_2R 2532471..2532585 1..115 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:16:25 Download gff for GH12207.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6646165..6646279 1..115 100   Minus
2R 6643617..6644082 1180..1645 100 <- Minus
2R 6644202..6644740 641..1179 100 <- Minus
2R 6645411..6645582 469..640 100 <- Minus
2R 6645693..6645882 279..468 100 <- Minus
2R 6645941..6646103 116..278 100 <- Minus

GH12207.pep Sequence

Translation from 69 to 1358

> GH12207.pep
MIKTSVDKRRVCVIGAGTAGLCALKNSLEAGLDAVAYERGTEIGGTWIFS
EEMPKDEYDEVHSSMYEGLRTNLPKEVMGYPDYSYPDDITESFITSNQVL
EFLRSYAEHFKLKAHIKLQHEVIRVRPRLDDWEVYVWDHSTDTCDPVYYD
FVYVCNGHYTEPDLPEVEGLDLFEGNKMHSHLYRKADKFKDARVLIIGAG
PSGMDITNHVRLAAKQVFLSHHLSTTPNTAFMGNVTQKPDVKRFTKDGAV
FTDGSTESFDHVMFCTGYKYTFPCLSTDVGVQVIDNFVQPLWKHCININH
PTMAFVGLPFNVIPTHIFDMQVRFTLKFFTGQRKFPSREQMIADLEQEIG
ERWGCGVRNQKKAHQMGERQFVYYNELASIAGIENIKPVIHKLMKDCGKK
YIFELDTYRSNKYTILDDENFLKNGEAIV*

GH12207.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:27:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13806-PA 425 GF13806-PA 4..423 8..427 2060 89.8 Plus
Dana\GF12882-PA 416 GF12882-PA 4..414 11..423 1015 45 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:27:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10818-PA 429 GG10818-PA 1..429 1..429 2224 94.4 Plus
Dere\GG22910-PA 415 GG22910-PA 3..413 11..423 1011 46 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:27:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22902-PA 427 GH22902-PA 1..424 1..423 1917 80.4 Plus
Dgri\GH20181-PA 370 GH20181-PA 3..357 11..367 819 42.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:30:41
Subject Length Description Subject Range Query Range Score Percent Strand
Fmo-2-PA 429 CG3174-PA 1..429 1..429 2312 100 Plus
Fmo-1-PA 416 CG3006-PA 4..414 11..423 969 44.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:27:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18387-PA 427 GI18387-PA 10..426 9..425 1926 81.1 Plus
Dmoj\GI20708-PA 415 GI20708-PA 3..413 11..423 968 43.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:27:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20239-PA 432 GL20239-PA 11..429 8..426 2022 86.4 Plus
Dper\GL11186-PA 415 GL11186-PA 3..413 11..423 1016 46 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:27:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16437-PA 432 GA16437-PA 11..429 8..426 2022 86.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:27:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20867-PA 429 GM20867-PA 1..429 1..429 2292 97.7 Plus
Dsec\GM16071-PA 416 GM16071-PA 4..414 11..423 989 44.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:27:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10319-PA 429 GD10319-PA 1..429 1..429 2302 98.1 Plus
Dsim\GD15455-PA 158 GD15455-PA 4..153 11..163 336 44.8 Plus
Dsim\GD15456-PA 84 GD15456-PA 1..82 341..423 159 37.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:27:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21464-PA 427 GJ21464-PA 1..424 1..423 1912 80.9 Plus
Dvir\GJ21889-PA 415 GJ21889-PA 3..413 11..423 964 44.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:27:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19621-PA 427 GK19621-PA 1..426 1..425 1955 80.3 Plus
Dwil\GK15849-PA 415 GK15849-PA 3..413 11..423 1001 44.3 Plus
Dwil\GK15848-PA 415 GK15848-PA 3..413 11..423 981 43.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:27:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24665-PA 428 GE24665-PA 1..428 1..428 2269 96.5 Plus
Dyak\GE14348-PA 415 GE14348-PA 3..413 11..423 1002 45 Plus

GH12207.hyp Sequence

Translation from 69 to 1358

> GH12207.hyp
MIKTSVDKRRVCVIGAGTAGLCALKNSLEAGLDAVAYERGTEIGGTWIFS
EEMPKDEYDEVHSSMYEGLRTNLPKEVMGYPDYSYPDDITESFITSNQVL
EFLRSYAEHFKLKAHIKLQHEVIRVRPRLDDWEVYVWDHSTDTCDPVYYD
FVYVCNGHYTEPDLPEVEGLDLFEGNKMHSHLYRKADKFKDARVLIIGAG
PSGMDITNHVRLAAKQVFLSHHLSTTPNTAFMGNVTQKPDVKRFTKDGAV
FTDGSTESFDHVMFCTGYKYTFPCLSTDVGVQVIDNFVQPLWKHCININH
PTMAFVGLPFNVIPTHIFDMQVRFTLKFFTGQRKFPSREQMIADLEQEIG
ERWGCGVRNQKKAHQMGERQFVYYNELASIAGIENIKPVIHKLMKDCGKK
YIFELDTYRSNKYTILDDENFLKNGEAIV*

GH12207.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:29:40
Subject Length Description Subject Range Query Range Score Percent Strand
Fmo-2-PA 429 CG3174-PA 1..429 1..429 2312 100 Plus
Fmo-1-PA 416 CG3006-PA 4..414 11..423 969 44.1 Plus