BDGP Sequence Production Resources |
Search the DGRC for GH12243
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 122 |
Well: | 43 |
Vector: | pOT2 |
Associated Gene/Transcript | Phm-RA |
Protein status: | GH12243.pep: gold |
Preliminary Size: | 1446 |
Sequenced Size: | 1423 |
Gene | Date | Evidence |
---|---|---|
CG3832 | 2001-01-01 | Release 2 assignment |
CG3832 | 2001-11-08 | Blastp of sequenced clone |
CG3832 | 2003-01-01 | Sim4 clustering to Release 3 |
Phm | 2008-04-29 | Release 5.5 accounting |
Phm | 2008-08-15 | Release 5.9 accounting |
Phm | 2008-12-18 | 5.12 accounting |
1423 bp (1423 high quality bases) assembled on 2001-11-08
GenBank Submission: AY069103
> GH12243.complete AAAAATATCGGAGAGAGCAATACAAAACGTATTGTTCTTCCAAACAGGAA GGTTTTTTTTCGTTTTCCACAAAGTATTCAGTGCAGTGCACACTCGAATA TAGTTCGAATACGGTGAAAATGCCACGCATATCCGAAATAGCCGCTTCCG TGGGGCTGCTCCTGCTTATCGGAGTGATCAGTGTGGATGGCCTTGTGAAA GAGGGGGATTACCAAAACTCCCTTTATCAACAGAATCTCGAGTCGAACTC CGCAACAGGCGCAACGGCTTCGTTTCCATTCCTGATGCCCAACGTTTCGC CCCAGACCCCCGATCTGTACTTGTGCACGCCCATCAAGGTCGACCCAACT ACCACCTACTATATTGTTGGCTTCAATCCTAATGCCACGATGAACACGGC CCACCATATGCTGCTCTACGGATGCGGAGAGCCCGGAACCTCGAAGACCA CCTGGAACTGTGGCGAGATGAACCGAGCTTCCCAAGAAGAGTCTGCCAGT CCTTGCGGACCCCACTCCAATTCCCAGATCGTATACGCTTGGGCCAGAGA CGCCCAAAAGTTAAATCTGCCCGAGGGAGTGGGTTTCAAGGTGGGCAAGA ACTCGCCAATCAAGTACCTTGTGCTGCAAGTTCACTACGCGCACATTGAT AAGTTCAAAGATGGCTCCACTGATGATTCTGGTGTGTTTTTGGATTACAC AGAAGAGCCTCGGAAAAAGCTGGCTGGCACTCTGCTGCTGGGCACTGACG GACAGATTCCGGCGATGAAGACGGAGCACCTGGAAACGGCCTGCGAGGTG AACGAGCAGAAGGTGCTGCATCCTTTTGCGTACCGGGTGCACACCCACGG CCTGGGAAAGGTCGTTTCCGGCTACCGGGTGAGGACAAACAGCGACGGCG AACAGGAGTGGCTGCAGCTGGGCAAGAGAGATCCCCTCACGCCCCAGATG TTCTATAACACCAGCAACACAGACCCCATAATCGAGGGAGATAAGATCGC CGTGAGGTGTACTATGCAGAGCACTCGCCATCGGACTACCAAAATAGGTC CCACGAACGAGGACGAGATGTGCAACTTCTATCTCATGTACTACGTGGAT CACGGGGAGACACTAAACATGAAGTTCTGCTTCAGCCAGGGCGCCCCCTA CTACTTCTGGTCCAATCCCGACTCCGGCCTACACAATATCCCACATATCG AGGCGAGCACCTTGTAATCAGCGCTCGTCGAGAGCCAGGAAATCGGCCGC GGAAAGAGAAACGAATGTATACTACCTTACTGTCTGGATTATTTTATCGT GTGCAACAACTAATGATGGTTTAGCCTCATTCTGTATCCCCTTTTGTTGG CCACCAATGATTTATATAACATATTTGTGTAACGTGTAAATAAACATATG TAGATAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 19871432..19871789 | 1405..1048 | 1730 | 98.9 | Minus |
chr2R | 21145070 | chr2R | 19871856..19872194 | 1048..710 | 1680 | 99.7 | Minus |
chr2R | 21145070 | chr2R | 19874195..19874501 | 308..1 | 1475 | 99.4 | Minus |
chr2R | 21145070 | chr2R | 19872355..19872490 | 660..525 | 680 | 100 | Minus |
chr2R | 21145070 | chr2R | 19873547..19873636 | 455..366 | 450 | 100 | Minus |
chr2R | 21145070 | chr2R | 19873418..19873491 | 527..454 | 370 | 100 | Minus |
chr2R | 21145070 | chr2R | 19873699..19873756 | 366..309 | 290 | 100 | Minus |
chr2R | 21145070 | chr2R | 19872253..19872303 | 709..659 | 255 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 23985337..23985696 | 1407..1048 | 1800 | 100 | Minus |
2R | 25286936 | 2R | 23985763..23986101 | 1048..710 | 1695 | 100 | Minus |
2R | 25286936 | 2R | 23988114..23988421 | 308..1 | 1540 | 100 | Minus |
2R | 25286936 | 2R | 23986262..23986397 | 660..525 | 680 | 100 | Minus |
2R | 25286936 | 2R | 23987466..23987555 | 455..366 | 450 | 100 | Minus |
2R | 25286936 | 2R | 23987337..23987410 | 527..454 | 370 | 100 | Minus |
2R | 25286936 | 2R | 23987618..23987675 | 366..309 | 290 | 100 | Minus |
2R | 25286936 | 2R | 23986160..23986210 | 709..659 | 255 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 23986536..23986895 | 1407..1048 | 1800 | 100 | Minus |
2R | 25260384 | 2R | 23986962..23987300 | 1048..710 | 1695 | 100 | Minus |
2R | 25260384 | 2R | 23989313..23989620 | 308..1 | 1540 | 100 | Minus |
2R | 25260384 | 2R | 23987461..23987596 | 660..525 | 680 | 100 | Minus |
2R | 25260384 | 2R | 23988665..23988754 | 455..366 | 450 | 100 | Minus |
2R | 25260384 | 2R | 23988536..23988609 | 527..454 | 370 | 100 | Minus |
2R | 25260384 | 2R | 23988817..23988874 | 366..309 | 290 | 100 | Minus |
2R | 25260384 | 2R | 23987359..23987409 | 709..659 | 255 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rt1b | 5171 | Rt1b RT1B 5150bp | 4077..4139 | 252..312 | 112 | 66.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 19872355..19872487 | 528..660 | 100 | <- | Minus |
chr2R | 19873418..19873490 | 455..527 | 100 | <- | Minus |
chr2R | 19873548..19873635 | 367..454 | 100 | <- | Minus |
chr2R | 19873699..19873756 | 309..366 | 100 | <- | Minus |
chr2R | 19871432..19871788 | 1049..1405 | 98 | <- | Minus |
chr2R | 19871856..19872194 | 710..1048 | 99 | <- | Minus |
chr2R | 19872253..19872301 | 661..709 | 100 | <- | Minus |
chr2R | 19874195..19874501 | 1..308 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Phm-RA | 1..1098 | 120..1217 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Phm-RA | 1..1098 | 120..1217 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Phm-RB | 1..1098 | 120..1217 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Phm-RA | 1..1098 | 120..1217 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Phm-RB | 1..1098 | 120..1217 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Phm-RA | 47..1451 | 1..1405 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Phm-RA | 47..1451 | 1..1405 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Phm-RB | 35..1439 | 1..1405 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Phm-RA | 47..1451 | 1..1405 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Phm-RB | 35..1439 | 1..1405 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23985339..23985695 | 1049..1405 | 100 | <- | Minus |
2R | 23985763..23986101 | 710..1048 | 100 | <- | Minus |
2R | 23986160..23986208 | 661..709 | 100 | <- | Minus |
2R | 23986262..23986394 | 528..660 | 100 | <- | Minus |
2R | 23987337..23987409 | 455..527 | 100 | <- | Minus |
2R | 23987467..23987554 | 367..454 | 100 | <- | Minus |
2R | 23987618..23987675 | 309..366 | 100 | <- | Minus |
2R | 23988114..23988421 | 1..308 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23985339..23985695 | 1049..1405 | 100 | <- | Minus |
2R | 23985763..23986101 | 710..1048 | 100 | <- | Minus |
2R | 23986160..23986208 | 661..709 | 100 | <- | Minus |
2R | 23986262..23986394 | 528..660 | 100 | <- | Minus |
2R | 23987337..23987409 | 455..527 | 100 | <- | Minus |
2R | 23987467..23987554 | 367..454 | 100 | <- | Minus |
2R | 23987618..23987675 | 309..366 | 100 | <- | Minus |
2R | 23988114..23988421 | 1..308 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23985339..23985695 | 1049..1405 | 100 | <- | Minus |
2R | 23985763..23986101 | 710..1048 | 100 | <- | Minus |
2R | 23986160..23986208 | 661..709 | 100 | <- | Minus |
2R | 23986262..23986394 | 528..660 | 100 | <- | Minus |
2R | 23987337..23987409 | 455..527 | 100 | <- | Minus |
2R | 23987467..23987554 | 367..454 | 100 | <- | Minus |
2R | 23987618..23987675 | 309..366 | 100 | <- | Minus |
2R | 23988114..23988421 | 1..308 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 19875637..19875944 | 1..308 | 100 | Minus | |
arm_2R | 19874860..19874932 | 455..527 | 100 | <- | Minus |
arm_2R | 19874990..19875077 | 367..454 | 100 | <- | Minus |
arm_2R | 19875141..19875198 | 309..366 | 100 | <- | Minus |
arm_2R | 19872862..19873218 | 1049..1405 | 100 | <- | Minus |
arm_2R | 19873286..19873624 | 710..1048 | 100 | <- | Minus |
arm_2R | 19873683..19873731 | 661..709 | 100 | <- | Minus |
arm_2R | 19873785..19873917 | 528..660 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23986556..23986912 | 1049..1405 | 100 | <- | Minus |
2R | 23986980..23987318 | 710..1048 | 100 | <- | Minus |
2R | 23987377..23987425 | 661..709 | 100 | <- | Minus |
2R | 23987479..23987611 | 528..660 | 100 | <- | Minus |
2R | 23988554..23988626 | 455..527 | 100 | <- | Minus |
2R | 23988684..23988771 | 367..454 | 100 | <- | Minus |
2R | 23988835..23988892 | 309..366 | 100 | <- | Minus |
2R | 23989331..23989638 | 1..308 | 100 | Minus |
Translation from 2 to 1216
> GH12243.hyp KYRREQYKTYCSSKQEGFFSFSTKYSVQCTLEYSSNTVKMPRISEIAASV GLLLLIGVISVDGLVKEGDYQNSLYQQNLESNSATGATASFPFLMPNVSP QTPDLYLCTPIKVDPTTTYYIVGFNPNATMNTAHHMLLYGCGEPGTSKTT WNCGEMNRASQEESASPCGPHSNSQIVYAWARDAQKLNLPEGVGFKVGKN SPIKYLVLQVHYAHIDKFKDGSTDDSGVFLDYTEEPRKKLAGTLLLGTDG QIPAMKTEHLETACEVNEQKVLHPFAYRVHTHGLGKVVSGYRVRTNSDGE QEWLQLGKRDPLTPQMFYNTSNTDPIIEGDKIAVRCTMQSTRHRTTKIGP TNEDEMCNFYLMYYVDHGETLNMKFCFSQGAPYYFWSNPDSGLHNIPHIE ASTL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Phm-PA | 365 | CG3832-PA | 1..365 | 40..404 | 1969 | 100 | Plus |
Phm-PB | 365 | CG3832-PB | 1..365 | 40..404 | 1969 | 100 | Plus |
CG5235-PB | 698 | CG5235-PB | 231..518 | 105..378 | 172 | 24.3 | Plus |
CG5235-PA | 698 | CG5235-PA | 231..518 | 105..378 | 172 | 24.3 | Plus |
Translation from 119 to 1216
> GH12243.pep MPRISEIAASVGLLLLIGVISVDGLVKEGDYQNSLYQQNLESNSATGATA SFPFLMPNVSPQTPDLYLCTPIKVDPTTTYYIVGFNPNATMNTAHHMLLY GCGEPGTSKTTWNCGEMNRASQEESASPCGPHSNSQIVYAWARDAQKLNL PEGVGFKVGKNSPIKYLVLQVHYAHIDKFKDGSTDDSGVFLDYTEEPRKK LAGTLLLGTDGQIPAMKTEHLETACEVNEQKVLHPFAYRVHTHGLGKVVS GYRVRTNSDGEQEWLQLGKRDPLTPQMFYNTSNTDPIIEGDKIAVRCTMQ STRHRTTKIGPTNEDEMCNFYLMYYVDHGETLNMKFCFSQGAPYYFWSNP DSGLHNIPHIEASTL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12045-PA | 362 | GF12045-PA | 1..360 | 1..365 | 1631 | 80.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19969-PA | 482 | GG19969-PA | 254..482 | 137..365 | 1215 | 95.2 | Plus |
Dere\GG19969-PA | 482 | GG19969-PA | 1..136 | 1..136 | 642 | 93.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21703-PA | 327 | GH21703-PA | 12..327 | 50..365 | 1466 | 81.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Phm-PA | 365 | CG3832-PA | 1..365 | 1..365 | 1969 | 100 | Plus |
Phm-PB | 365 | CG3832-PB | 1..365 | 1..365 | 1969 | 100 | Plus |
CG5235-PB | 698 | CG5235-PB | 231..518 | 66..339 | 172 | 24.3 | Plus |
CG5235-PA | 698 | CG5235-PA | 231..518 | 66..339 | 172 | 24.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20691-PA | 361 | GI20691-PA | 7..361 | 11..365 | 1428 | 70.7 | Plus |
Dmoj\GI20678-PA | 678 | GI20678-PA | 199..505 | 41..325 | 209 | 26.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10437-PA | 359 | GL10437-PA | 1..359 | 1..365 | 1557 | 76.4 | Plus |
Dper\GL14102-PA | 657 | GL14102-PA | 183..470 | 59..325 | 158 | 25.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17718-PA | 359 | GA17718-PA | 1..359 | 1..365 | 1567 | 76.7 | Plus |
Dpse\GA18755-PA | 705 | GA18755-PA | 212..518 | 42..325 | 157 | 24.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15482-PA | 365 | GM15482-PA | 1..365 | 1..365 | 1974 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24986-PA | 137 | GD24986-PA | 1..137 | 1..137 | 725 | 97.8 | Plus |
Dsim\GD12516-PA | 697 | GD12516-PA | 231..518 | 66..339 | 161 | 24 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21893-PA | 357 | GJ21893-PA | 3..357 | 7..365 | 1436 | 72.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10749-PA | 368 | GK10749-PA | 24..368 | 24..365 | 1464 | 76 | Plus |
Dwil\GK21375-PA | 715 | GK21375-PA | 242..538 | 59..339 | 155 | 23.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE11501-PA | 365 | GE11501-PA | 1..365 | 1..365 | 1907 | 95.1 | Plus |