Clone GH12243 Report

Search the DGRC for GH12243

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:122
Well:43
Vector:pOT2
Associated Gene/TranscriptPhm-RA
Protein status:GH12243.pep: gold
Preliminary Size:1446
Sequenced Size:1423

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3832 2001-01-01 Release 2 assignment
CG3832 2001-11-08 Blastp of sequenced clone
CG3832 2003-01-01 Sim4 clustering to Release 3
Phm 2008-04-29 Release 5.5 accounting
Phm 2008-08-15 Release 5.9 accounting
Phm 2008-12-18 5.12 accounting

Clone Sequence Records

GH12243.complete Sequence

1423 bp (1423 high quality bases) assembled on 2001-11-08

GenBank Submission: AY069103

> GH12243.complete
AAAAATATCGGAGAGAGCAATACAAAACGTATTGTTCTTCCAAACAGGAA
GGTTTTTTTTCGTTTTCCACAAAGTATTCAGTGCAGTGCACACTCGAATA
TAGTTCGAATACGGTGAAAATGCCACGCATATCCGAAATAGCCGCTTCCG
TGGGGCTGCTCCTGCTTATCGGAGTGATCAGTGTGGATGGCCTTGTGAAA
GAGGGGGATTACCAAAACTCCCTTTATCAACAGAATCTCGAGTCGAACTC
CGCAACAGGCGCAACGGCTTCGTTTCCATTCCTGATGCCCAACGTTTCGC
CCCAGACCCCCGATCTGTACTTGTGCACGCCCATCAAGGTCGACCCAACT
ACCACCTACTATATTGTTGGCTTCAATCCTAATGCCACGATGAACACGGC
CCACCATATGCTGCTCTACGGATGCGGAGAGCCCGGAACCTCGAAGACCA
CCTGGAACTGTGGCGAGATGAACCGAGCTTCCCAAGAAGAGTCTGCCAGT
CCTTGCGGACCCCACTCCAATTCCCAGATCGTATACGCTTGGGCCAGAGA
CGCCCAAAAGTTAAATCTGCCCGAGGGAGTGGGTTTCAAGGTGGGCAAGA
ACTCGCCAATCAAGTACCTTGTGCTGCAAGTTCACTACGCGCACATTGAT
AAGTTCAAAGATGGCTCCACTGATGATTCTGGTGTGTTTTTGGATTACAC
AGAAGAGCCTCGGAAAAAGCTGGCTGGCACTCTGCTGCTGGGCACTGACG
GACAGATTCCGGCGATGAAGACGGAGCACCTGGAAACGGCCTGCGAGGTG
AACGAGCAGAAGGTGCTGCATCCTTTTGCGTACCGGGTGCACACCCACGG
CCTGGGAAAGGTCGTTTCCGGCTACCGGGTGAGGACAAACAGCGACGGCG
AACAGGAGTGGCTGCAGCTGGGCAAGAGAGATCCCCTCACGCCCCAGATG
TTCTATAACACCAGCAACACAGACCCCATAATCGAGGGAGATAAGATCGC
CGTGAGGTGTACTATGCAGAGCACTCGCCATCGGACTACCAAAATAGGTC
CCACGAACGAGGACGAGATGTGCAACTTCTATCTCATGTACTACGTGGAT
CACGGGGAGACACTAAACATGAAGTTCTGCTTCAGCCAGGGCGCCCCCTA
CTACTTCTGGTCCAATCCCGACTCCGGCCTACACAATATCCCACATATCG
AGGCGAGCACCTTGTAATCAGCGCTCGTCGAGAGCCAGGAAATCGGCCGC
GGAAAGAGAAACGAATGTATACTACCTTACTGTCTGGATTATTTTATCGT
GTGCAACAACTAATGATGGTTTAGCCTCATTCTGTATCCCCTTTTGTTGG
CCACCAATGATTTATATAACATATTTGTGTAACGTGTAAATAAACATATG
TAGATAAAAAAAAAAAAAAAAAA

GH12243.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:01:13
Subject Length Description Subject Range Query Range Score Percent Strand
Phm-RA 1782 Phm-RA 214..1620 1..1407 7035 100 Plus
Phm-RB 1772 Phm-RB 214..1620 1..1407 7035 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:41:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19871432..19871789 1405..1048 1730 98.9 Minus
chr2R 21145070 chr2R 19871856..19872194 1048..710 1680 99.7 Minus
chr2R 21145070 chr2R 19874195..19874501 308..1 1475 99.4 Minus
chr2R 21145070 chr2R 19872355..19872490 660..525 680 100 Minus
chr2R 21145070 chr2R 19873547..19873636 455..366 450 100 Minus
chr2R 21145070 chr2R 19873418..19873491 527..454 370 100 Minus
chr2R 21145070 chr2R 19873699..19873756 366..309 290 100 Minus
chr2R 21145070 chr2R 19872253..19872303 709..659 255 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:46:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:41:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23985337..23985696 1407..1048 1800 100 Minus
2R 25286936 2R 23985763..23986101 1048..710 1695 100 Minus
2R 25286936 2R 23988114..23988421 308..1 1540 100 Minus
2R 25286936 2R 23986262..23986397 660..525 680 100 Minus
2R 25286936 2R 23987466..23987555 455..366 450 100 Minus
2R 25286936 2R 23987337..23987410 527..454 370 100 Minus
2R 25286936 2R 23987618..23987675 366..309 290 100 Minus
2R 25286936 2R 23986160..23986210 709..659 255 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:26:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23986536..23986895 1407..1048 1800 100 Minus
2R 25260384 2R 23986962..23987300 1048..710 1695 100 Minus
2R 25260384 2R 23989313..23989620 308..1 1540 100 Minus
2R 25260384 2R 23987461..23987596 660..525 680 100 Minus
2R 25260384 2R 23988665..23988754 455..366 450 100 Minus
2R 25260384 2R 23988536..23988609 527..454 370 100 Minus
2R 25260384 2R 23988817..23988874 366..309 290 100 Minus
2R 25260384 2R 23987359..23987409 709..659 255 100 Minus
Blast to na_te.dros performed 2019-03-16 23:41:41
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1b 5171 Rt1b RT1B 5150bp 4077..4139 252..312 112 66.7 Plus

GH12243.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:42:36 Download gff for GH12243.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19872355..19872487 528..660 100 <- Minus
chr2R 19873418..19873490 455..527 100 <- Minus
chr2R 19873548..19873635 367..454 100 <- Minus
chr2R 19873699..19873756 309..366 100 <- Minus
chr2R 19871432..19871788 1049..1405 98 <- Minus
chr2R 19871856..19872194 710..1048 99 <- Minus
chr2R 19872253..19872301 661..709 100 <- Minus
chr2R 19874195..19874501 1..308 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:37:28 Download gff for GH12243.complete
Subject Subject Range Query Range Percent Splice Strand
Phm-RA 1..1098 120..1217 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:34:47 Download gff for GH12243.complete
Subject Subject Range Query Range Percent Splice Strand
Phm-RA 1..1098 120..1217 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:47:35 Download gff for GH12243.complete
Subject Subject Range Query Range Percent Splice Strand
Phm-RB 1..1098 120..1217 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:02:21 Download gff for GH12243.complete
Subject Subject Range Query Range Percent Splice Strand
Phm-RA 1..1098 120..1217 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:55:42 Download gff for GH12243.complete
Subject Subject Range Query Range Percent Splice Strand
Phm-RB 1..1098 120..1217 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:14:29 Download gff for GH12243.complete
Subject Subject Range Query Range Percent Splice Strand
Phm-RA 47..1451 1..1405 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:34:47 Download gff for GH12243.complete
Subject Subject Range Query Range Percent Splice Strand
Phm-RA 47..1451 1..1405 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:35 Download gff for GH12243.complete
Subject Subject Range Query Range Percent Splice Strand
Phm-RB 35..1439 1..1405 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:02:21 Download gff for GH12243.complete
Subject Subject Range Query Range Percent Splice Strand
Phm-RA 47..1451 1..1405 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:55:42 Download gff for GH12243.complete
Subject Subject Range Query Range Percent Splice Strand
Phm-RB 35..1439 1..1405 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:42:36 Download gff for GH12243.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23985339..23985695 1049..1405 100 <- Minus
2R 23985763..23986101 710..1048 100 <- Minus
2R 23986160..23986208 661..709 100 <- Minus
2R 23986262..23986394 528..660 100 <- Minus
2R 23987337..23987409 455..527 100 <- Minus
2R 23987467..23987554 367..454 100 <- Minus
2R 23987618..23987675 309..366 100 <- Minus
2R 23988114..23988421 1..308 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:42:36 Download gff for GH12243.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23985339..23985695 1049..1405 100 <- Minus
2R 23985763..23986101 710..1048 100 <- Minus
2R 23986160..23986208 661..709 100 <- Minus
2R 23986262..23986394 528..660 100 <- Minus
2R 23987337..23987409 455..527 100 <- Minus
2R 23987467..23987554 367..454 100 <- Minus
2R 23987618..23987675 309..366 100 <- Minus
2R 23988114..23988421 1..308 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:42:36 Download gff for GH12243.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23985339..23985695 1049..1405 100 <- Minus
2R 23985763..23986101 710..1048 100 <- Minus
2R 23986160..23986208 661..709 100 <- Minus
2R 23986262..23986394 528..660 100 <- Minus
2R 23987337..23987409 455..527 100 <- Minus
2R 23987467..23987554 367..454 100 <- Minus
2R 23987618..23987675 309..366 100 <- Minus
2R 23988114..23988421 1..308 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:35 Download gff for GH12243.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19875637..19875944 1..308 100   Minus
arm_2R 19874860..19874932 455..527 100 <- Minus
arm_2R 19874990..19875077 367..454 100 <- Minus
arm_2R 19875141..19875198 309..366 100 <- Minus
arm_2R 19872862..19873218 1049..1405 100 <- Minus
arm_2R 19873286..19873624 710..1048 100 <- Minus
arm_2R 19873683..19873731 661..709 100 <- Minus
arm_2R 19873785..19873917 528..660 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:39:22 Download gff for GH12243.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23986556..23986912 1049..1405 100 <- Minus
2R 23986980..23987318 710..1048 100 <- Minus
2R 23987377..23987425 661..709 100 <- Minus
2R 23987479..23987611 528..660 100 <- Minus
2R 23988554..23988626 455..527 100 <- Minus
2R 23988684..23988771 367..454 100 <- Minus
2R 23988835..23988892 309..366 100 <- Minus
2R 23989331..23989638 1..308 100   Minus

GH12243.hyp Sequence

Translation from 2 to 1216

> GH12243.hyp
KYRREQYKTYCSSKQEGFFSFSTKYSVQCTLEYSSNTVKMPRISEIAASV
GLLLLIGVISVDGLVKEGDYQNSLYQQNLESNSATGATASFPFLMPNVSP
QTPDLYLCTPIKVDPTTTYYIVGFNPNATMNTAHHMLLYGCGEPGTSKTT
WNCGEMNRASQEESASPCGPHSNSQIVYAWARDAQKLNLPEGVGFKVGKN
SPIKYLVLQVHYAHIDKFKDGSTDDSGVFLDYTEEPRKKLAGTLLLGTDG
QIPAMKTEHLETACEVNEQKVLHPFAYRVHTHGLGKVVSGYRVRTNSDGE
QEWLQLGKRDPLTPQMFYNTSNTDPIIEGDKIAVRCTMQSTRHRTTKIGP
TNEDEMCNFYLMYYVDHGETLNMKFCFSQGAPYYFWSNPDSGLHNIPHIE
ASTL*

GH12243.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:30:03
Subject Length Description Subject Range Query Range Score Percent Strand
Phm-PA 365 CG3832-PA 1..365 40..404 1969 100 Plus
Phm-PB 365 CG3832-PB 1..365 40..404 1969 100 Plus
CG5235-PB 698 CG5235-PB 231..518 105..378 172 24.3 Plus
CG5235-PA 698 CG5235-PA 231..518 105..378 172 24.3 Plus

GH12243.pep Sequence

Translation from 119 to 1216

> GH12243.pep
MPRISEIAASVGLLLLIGVISVDGLVKEGDYQNSLYQQNLESNSATGATA
SFPFLMPNVSPQTPDLYLCTPIKVDPTTTYYIVGFNPNATMNTAHHMLLY
GCGEPGTSKTTWNCGEMNRASQEESASPCGPHSNSQIVYAWARDAQKLNL
PEGVGFKVGKNSPIKYLVLQVHYAHIDKFKDGSTDDSGVFLDYTEEPRKK
LAGTLLLGTDGQIPAMKTEHLETACEVNEQKVLHPFAYRVHTHGLGKVVS
GYRVRTNSDGEQEWLQLGKRDPLTPQMFYNTSNTDPIIEGDKIAVRCTMQ
STRHRTTKIGPTNEDEMCNFYLMYYVDHGETLNMKFCFSQGAPYYFWSNP
DSGLHNIPHIEASTL*

GH12243.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:28:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12045-PA 362 GF12045-PA 1..360 1..365 1631 80.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:28:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19969-PA 482 GG19969-PA 254..482 137..365 1215 95.2 Plus
Dere\GG19969-PA 482 GG19969-PA 1..136 1..136 642 93.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:29:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21703-PA 327 GH21703-PA 12..327 50..365 1466 81.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:11:49
Subject Length Description Subject Range Query Range Score Percent Strand
Phm-PA 365 CG3832-PA 1..365 1..365 1969 100 Plus
Phm-PB 365 CG3832-PB 1..365 1..365 1969 100 Plus
CG5235-PB 698 CG5235-PB 231..518 66..339 172 24.3 Plus
CG5235-PA 698 CG5235-PA 231..518 66..339 172 24.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:29:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20691-PA 361 GI20691-PA 7..361 11..365 1428 70.7 Plus
Dmoj\GI20678-PA 678 GI20678-PA 199..505 41..325 209 26.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:29:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10437-PA 359 GL10437-PA 1..359 1..365 1557 76.4 Plus
Dper\GL14102-PA 657 GL14102-PA 183..470 59..325 158 25.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:29:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17718-PA 359 GA17718-PA 1..359 1..365 1567 76.7 Plus
Dpse\GA18755-PA 705 GA18755-PA 212..518 42..325 157 24.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:29:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15482-PA 365 GM15482-PA 1..365 1..365 1974 98.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:29:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24986-PA 137 GD24986-PA 1..137 1..137 725 97.8 Plus
Dsim\GD12516-PA 697 GD12516-PA 231..518 66..339 161 24 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:29:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21893-PA 357 GJ21893-PA 3..357 7..365 1436 72.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10749-PA 368 GK10749-PA 24..368 24..365 1464 76 Plus
Dwil\GK21375-PA 715 GK21375-PA 242..538 59..339 155 23.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11501-PA 365 GE11501-PA 1..365 1..365 1907 95.1 Plus