Clone GH12326 Report

Search the DGRC for GH12326

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:123
Well:26
Vector:pOT2
Associated Gene/TranscriptCG17841-RA
Protein status:GH12326.pep: gold
Preliminary Size:1948
Sequenced Size:1836

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17841 2000-02-14 Blastp of sequenced clone
CG17841 2001-01-01 Release 2 assignment
CG2898 2001-01-01 Release 2 assignment
CG17841 2003-01-01 Sim4 clustering to Release 3
CG17841 2008-04-29 Release 5.5 accounting
CG17841 2008-08-15 Release 5.9 accounting
CG17841 2008-12-18 5.12 accounting

Clone Sequence Records

GH12326.complete Sequence

1836 bp (1836 high quality bases) assembled on 2000-02-14

GenBank Submission: AF181646

> GH12326.complete
CCGATTGGTTGCGACGACGAATCCGCACGAATCCATGAGCCCTCGCACCG
CCGAGTCTTCCAGCTCCTCCCGATCGCCCAGTCGTCCAATCGCCATGTCC
CAGACGCAGTGCCGCCTGTAAACAACCGCCGAGTGAAGTCCGCAGCCCGC
AGTCATCGGTAGCAGCAGCGTCAGGAGTCCGGAATCCGTTTCTCGGTTTC
CGCAACAGGTTGCGTCGCCTTCGCCAACAGAAGGTTTTAGTGCGAGCTTT
GATCAGAGCGTGGAGTGCGTATACGCGCCAGGATGCAGCAGCGCCGACAG
CCGGCGAATGGCAACGGCAGAGGAGGAGGAACCACCGCCGCCGTCCGTAC
GGAGGAGCAGCAACAACAGCAGCAGCCATTGAGTCAGGATGCTGGCGCCA
AGGAGGCGGGCAGCACGCCGGGCAAGGCAACGGGACGCGGCTGCTATTTC
TCGCTGGCCTTCTCCATCGGTTCGATGGGCCTGGCCTGCGGCAGCCTGTG
GCAGATACCGAACAGCAGTGACCGCATCTCGCTGCAGCGCGGCCTGGTGC
TCACCTCGCTGGGATTCATCTATTTTGTCTCGCTAACGGACTTCTGCAAC
AAATACCTGCTGGAGACGACGCATGGACAGCGCTTTCGTCGCAAGTACCG
CCTGATGATGTCCGACGTCCTGGAGATAACCAACAAAATCGTCTCGGCAA
TCCAGGCCTCATTCTCCTTCTTCGTGGGACTCATCGTCTGCAAGTCGACG
TGCACCAAATCCTTTGTATATGCATCCCACTTCTTGATGGAGGCGTACGG
TTGGTTCGGCACTGCTTACTTTATGTACGACATCTGGTCGATGTACAAGG
TGCACACCCAGAAGATCGCCGACAAGCTGCACCTGCTGCGCATTACCAAG
GGTCAAGGGGCGGTGGTGAGCAATGGCCACGCCAATGGCAAGGTCAACGG
CAAGTCGGCCAGCGGCAACAACAACGGCAGCACTCCAACGAATCTGCACG
AGATCTGCGACTACGATGGAGCCTGTGTCCAGATACCCAAGGACGGCAGA
TGGGACTTTCTCAAGTACGTGGTCACGCACCCGGTCATGATGATACACCA
TGTCTTCATCGGAACATTTGGATTGCTGGTGGTGACGTACATTCGCGGTG
GCGGTCACTGCATCTACAGCTACATGTTCATGATGGAGTTCTCCACGCCG
TTCGTCTCGTTGCGCAGCATCCTGAGCACCATGCGCCTCAAGGATTCACG
TGTGTACATCGCCAACGGTCTGCTGATGCTGGCCACCTTCTTCGTGTGCC
GCGTCTGCATGTGGCCATACGTGATGTGGCGCTACAGCCTGGCCATTGAG
GCTGCATCCCTGTGGTCGGCCATGTGGGGCCTGCCGCGAGGATGCCTCAT
CAGCATCGCTATACTGTTCTTGCCACAGCTCTACTGGTTCTATCTGATGG
TTTTGGGTGCTCTCAAGGTCTTTCTACCGCAAAAGAGACGGCCGCCCAAC
GCAGTTCTATCGGCAAAGTCGGCGGCCGTGCCCACACCAACCCCCACCGC
CCTTATAAATGGCAAAAATTAGTGCAAATTGTATTTATTTTGAGGCAGAG
TTCCAGCCGCATCCGTTTTGCGGAGATCTTGCTATTGTTTATACATTTTT
AATTATACAACAAGAACGACCCACTACTAACCGGAAAACTGAAAACCGGA
AACAGAAAACCATGACGGACGGAGGATGAAAAAGGCAGCGGAAACGATGG
CGACCTACAAATGAACCGAAGACCATGGACAGACCCTTAGTGTTAAATAA
AGACATTATTTACTAAAAAAAAAAAAAAAAAAAAAA

GH12326.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:41:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG17841-RA 2267 CG17841-RA 85..1917 1..1833 9150 99.9 Plus
CG17841.a 2550 CG17841.a 85..1917 1..1833 9150 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:47:34
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 10259568..10260253 1..686 3430 100 Plus
chrX 22417052 chrX 10273159..10273609 687..1137 2240 99.8 Plus
chrX 22417052 chrX 10274080..10274428 1466..1814 1745 100 Plus
chrX 22417052 chrX 10273680..10274012 1137..1469 1665 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:46:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:47:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10368074..10368759 1..686 3430 100 Plus
X 23542271 X 10381659..10382109 687..1137 2255 100 Plus
X 23542271 X 10382580..10382947 1466..1833 1825 99.7 Plus
X 23542271 X 10382180..10382512 1137..1469 1665 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:02:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 10376172..10376857 1..686 3430 100 Plus
X 23527363 X 10389757..10390207 687..1137 2255 100 Plus
X 23527363 X 10390678..10391045 1466..1833 1825 99.7 Plus
X 23527363 X 10390278..10390610 1137..1469 1665 100 Plus
Blast to na_te.dros performed 2019-03-15 14:47:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6763..6854 285..376 153 67 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6831 286..389 130 63.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6716..6819 283..389 121 62 Plus
roo 9092 roo DM_ROO 9092bp 1069..1170 282..386 121 62.6 Plus
Dsim\ninja 6644 Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). 426..613 277..478 118 58.1 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 94..189 295..389 117 60.8 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9124..9219 295..389 117 60.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2371..2431 919..979 116 65.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2767..2838 919..989 114 63.9 Plus

GH12326.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:48:35 Download gff for GH12326.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 10259568..10260253 1..686 100 -> Plus
chrX 10273159..10273609 687..1137 99 -> Plus
chrX 10273681..10274010 1138..1467 100 -> Plus
chrX 10274082..10274425 1468..1814 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:23:49 Download gff for GH12326.complete
Subject Subject Range Query Range Percent Splice Strand
CG17841-RA 1..1290 283..1572 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:34:34 Download gff for GH12326.complete
Subject Subject Range Query Range Percent Splice Strand
CG17841-RA 1..1290 283..1572 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:41:55 Download gff for GH12326.complete
Subject Subject Range Query Range Percent Splice Strand
CG17841-RA 1..1290 283..1572 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:09:10 Download gff for GH12326.complete
Subject Subject Range Query Range Percent Splice Strand
CG17841-RA 1..1290 283..1572 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:08:29 Download gff for GH12326.complete
Subject Subject Range Query Range Percent Splice Strand
CG17841-RA 1..1290 283..1572 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:23:49 Download gff for GH12326.complete
Subject Subject Range Query Range Percent Splice Strand
CG17841-RA 24..1837 1..1814 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:34:34 Download gff for GH12326.complete
Subject Subject Range Query Range Percent Splice Strand
CG17841-RA 24..1837 1..1814 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:41:55 Download gff for GH12326.complete
Subject Subject Range Query Range Percent Splice Strand
CG17841-RA 23..1836 1..1814 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:09:11 Download gff for GH12326.complete
Subject Subject Range Query Range Percent Splice Strand
CG17841-RA 24..1837 1..1814 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:08:29 Download gff for GH12326.complete
Subject Subject Range Query Range Percent Splice Strand
CG17841-RA 23..1836 1..1814 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:48:35 Download gff for GH12326.complete
Subject Subject Range Query Range Percent Splice Strand
X 10368074..10368759 1..686 100 -> Plus
X 10381659..10382109 687..1137 100 -> Plus
X 10382181..10382510 1138..1467 100 -> Plus
X 10382582..10382928 1468..1814 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:48:35 Download gff for GH12326.complete
Subject Subject Range Query Range Percent Splice Strand
X 10368074..10368759 1..686 100 -> Plus
X 10381659..10382109 687..1137 100 -> Plus
X 10382181..10382510 1138..1467 100 -> Plus
X 10382582..10382928 1468..1814 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:48:35 Download gff for GH12326.complete
Subject Subject Range Query Range Percent Splice Strand
X 10368074..10368759 1..686 100 -> Plus
X 10381659..10382109 687..1137 100 -> Plus
X 10382181..10382510 1138..1467 100 -> Plus
X 10382582..10382928 1468..1814 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:41:55 Download gff for GH12326.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10262107..10262792 1..686 100 -> Plus
arm_X 10275692..10276142 687..1137 100 -> Plus
arm_X 10276214..10276543 1138..1467 100 -> Plus
arm_X 10276615..10276961 1468..1814 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:46:45 Download gff for GH12326.complete
Subject Subject Range Query Range Percent Splice Strand
X 10376172..10376857 1..686 100 -> Plus
X 10389757..10390207 687..1137 100 -> Plus
X 10390279..10390608 1138..1467 100 -> Plus
X 10390680..10391026 1468..1814 100   Plus

GH12326.hyp Sequence

Translation from 282 to 1571

> GH12326.hyp
MQQRRQPANGNGRGGGTTAAVRTEEQQQQQQPLSQDAGAKEAGSTPGKAT
GRGCYFSLAFSIGSMGLACGSLWQIPNSSDRISLQRGLVLTSLGFIYFVS
LTDFCNKYLLETTHGQRFRRKYRLMMSDVLEITNKIVSAIQASFSFFVGL
IVCKSTCTKSFVYASHFLMEAYGWFGTAYFMYDIWSMYKVHTQKIADKLH
LLRITKGQGAVVSNGHANGKVNGKSASGNNNGSTPTNLHEICDYDGACVQ
IPKDGRWDFLKYVVTHPVMMIHHVFIGTFGLLVVTYIRGGGHCIYSYMFM
MEFSTPFVSLRSILSTMRLKDSRVYIANGLLMLATFFVCRVCMWPYVMWR
YSLAIEAASLWSAMWGLPRGCLISIAILFLPQLYWFYLMVLGALKVFLPQ
KRRPPNAVLSAKSAAVPTPTPTALINGKN*

GH12326.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:30:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG17841-PA 429 CG17841-PA 1..429 1..429 2274 100 Plus

GH12326.pep Sequence

Translation from 282 to 1571

> GH12326.pep
MQQRRQPANGNGRGGGTTAAVRTEEQQQQQQPLSQDAGAKEAGSTPGKAT
GRGCYFSLAFSIGSMGLACGSLWQIPNSSDRISLQRGLVLTSLGFIYFVS
LTDFCNKYLLETTHGQRFRRKYRLMMSDVLEITNKIVSAIQASFSFFVGL
IVCKSTCTKSFVYASHFLMEAYGWFGTAYFMYDIWSMYKVHTQKIADKLH
LLRITKGQGAVVSNGHANGKVNGKSASGNNNGSTPTNLHEICDYDGACVQ
IPKDGRWDFLKYVVTHPVMMIHHVFIGTFGLLVVTYIRGGGHCIYSYMFM
MEFSTPFVSLRSILSTMRLKDSRVYIANGLLMLATFFVCRVCMWPYVMWR
YSLAIEAASLWSAMWGLPRGCLISIAILFLPQLYWFYLMVLGALKVFLPQ
KRRPPNAVLSAKSAAVPTPTPTALINGKN*

GH12326.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:30:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19335-PA 414 GF19335-PA 1..410 1..428 1733 78 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:30:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18353-PA 425 GG18353-PA 1..425 1..429 2116 94 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:30:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12015-PA 446 GH12015-PA 1..446 1..429 1694 73.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG17841-PB 429 CG17841-PB 1..429 1..429 2274 100 Plus
CG17841-PA 429 CG17841-PA 1..429 1..429 2274 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15195-PA 472 GI15195-PA 46..423 34..408 1624 81.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:30:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26846-PA 466 GL26846-PA 19..421 6..404 1645 76.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:30:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14695-PA 456 GA14695-PA 19..456 6..429 1669 74.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:30:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11420-PA 426 GM11420-PA 1..282 1..285 1464 96.8 Plus
Dsec\GM11420-PA 426 GM11420-PA 358..426 361..429 347 94.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:30:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16974-PA 425 GD16974-PA 1..425 1..429 2218 97.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14802-PA 438 GJ14802-PA 1..438 1..429 1724 75.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10357-PA 381 GK10357-PA 9..379 52..429 1577 79.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:30:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17842-PA 432 GE17842-PA 1..432 1..429 2037 92.9 Plus