Clone GH12350 Report

Search the DGRC for GH12350

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:123
Well:50
Vector:pOT2
Associated Gene/TranscriptCBP-RA
Protein status:GH12350.pep: gold
Preliminary Size:2149
Sequenced Size:2185

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1435 2000-02-14 Blastp of sequenced clone
CG1435 2001-01-01 Release 2 assignment
CG1435 2003-01-01 Sim4 clustering to Release 3
CBP 2008-04-29 Release 5.5 accounting
CBP 2008-08-15 Release 5.9 accounting
CBP 2008-12-18 5.12 accounting

Clone Sequence Records

GH12350.complete Sequence

2185 bp (2185 high quality bases) assembled on 2000-02-14

GenBank Submission: AF145675

> GH12350.complete
AACGCTTAAGCGAACGGTTGTGTTTACTCCCAAGCAAAGATATCCAAAAA
AAAAAAAAACTGAAACCACAGAGAAATCAAAATAGAAATTAGCGGACTCA
AAAACAAAGTGTAACAAAACAAAGCAGAAAAATAAAGGCAAACATTTTTT
TGTGGTGCATCTTCGAAAAAACCGGTTGTTAAATGCGCGTTGCAATCGAA
ATAATAACAAGAGTTCAACAACAAAATCCCTAAAAAAAAGCAACGTTGCA
CATTTTCTCGAGTGCAGTTCAAACTGTAAGGAAAACGTAGCGAAAATTGA
GGAAAAATTTAAGAAAACCGAGGTTAAAACTTGAGCGAAAAACAAAATGG
CATTCTCCATCGTGAGCCGTGGTATTTTGCGCACTTCAAGAGAAATTCTG
GAACGCAACATGGCCGCAACTGTCGGCGTTCTGCAGCAGAATGCCTCCCC
GCCCCCAAACACGCCCATTTCGCACAGCGATTGTCACCGCCTGGCATCTG
GCGGCATTATCTGTGGACATGGAGCACATTCACTGCTTTGGCATCAAATG
CCAACTGCCGTGGTCCAGGCTGTCCGTCAATATTCAAAGAAGGCCGGAGC
GGCCAAATTGCGACGGGAGGTGGAAAGTGATAGCGATTCCGACTCGGATG
ATGAGTTCGAGCGTCGTCGCCAGAAAATGGATTCCAAGCGCAGCGAACGG
GGCGACTCAGCATTCTGGCGCCGCAAAATGCGTACTCTCCACCGCATTTT
GGACGTTAATCACGACGGCGTCGTGTCCTTCGACGACTTTAGTTTGCTGG
CCAAACGCTTTAGCGATCTGGGCCATTTGACCCCAGAGGTCGCTGCCGAA
TTCAACGATGTGATCAAGCATACTTGGGAAGAGCAGTTCGGGGAGATAAC
CCCATACAATCTGGTAACTGCCGAGCAGTTCCTCACCGATCTGCACCATC
GTCTCAACGACAAGAAGATGGCCAAACGCATCGGTCGCTTCCTGCCCTAC
TTGTTTAAGGCTGTGGACTTTGATCACACTGGCCATTTGGATCTCGAACA
ATACAAGCTCTTCTTCCGTTGTCTGGGACTGACCGAAGACGATGCTGCCG
TTTCATTCGCTGTGATAGACAAGAACGGCGATGGCCAATTGTCGCTCAAG
GAGTTTGTGCATTTGGGCCGTCAGTTCTTTTTAACCGAGGACGACTCGAA
GATATCGAAAATGTTCTGGGGACCGCTGGTCGCTGATCATTGACGGGTTG
CAGTCACTGCTGTAGATTACAATACAACCAAATCAACAATAACCCAACAA
AAAAATCCTTACTACAATCAAGATTATCAGAACCATCAACACAACAACGT
CCGATGCCATAACATCGGCAACAATAACACCAATGAGCCAATGCTACATT
ATACATTGAATACGACAACGATGTTGGCCAATAACAATTACAATAAGATA
GTGGCCACTTCGTTGCCAACTCGCGTGCAGGCGGCAGGCGGCAGTTGGCT
AAATCTACAGCATGTGGCGCCTCATAAATCGGGACCGTTAATAAACATTA
GCAACACCACCACGATCGTTATAAGGAACATGAGCATTTACGATTATTTT
CGGCAACACTTGTCCAGTTCGAAGCGCCAGCGCTCGACCTTTGAGCCCCA
TCCATCGCCCACTACGTATCCCGCCTCCAAGTTGCGCAAGCACAACTTTA
GTAATTATCAAAAGGAACGGGAACGGGAAAGGGAAGACCGACAGAAAGAT
AATAATAATAATAATCATCGAACCAAGGGCAAACCATCATTAGATGACTA
CGATATAAGATTTTTTGTCTACCTTAACTCGCTAATAATATTCACAATGT
CGTGCAGTCGTCAATCGGCCGCCGAGGGCGATGACCTCAAGCATTTCATT
TGCGACCGGATCCGGAAATTCGATCGCCTACGACGAAAGGCAAGAAAACG
CCGCAAGAGAAGGCCCAAAAAGCTGGTCGAGGATCAAATGCACCATTTAT
AAACTCTGAAAAGTGGAGCTACATACTATTCACGGTCACCCTATTTACCA
TATAATCGATTATTTTTTTTTTGTCTAGTTAAGAGTTATGTTTAACTGAT
ATATTACACAATACAGCAAGCATGATATAACGGAATAAAAATGATTTTTA
AATATACTATAAATAATAAAAAAAAAAAAAAAAAA

GH12350.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
CBP-RA 2209 CBP-RA 16..2183 1..2168 10840 100 Plus
CBP-RB 1829 CBP-RB 146..1826 488..2168 8405 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:12:41
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 7233503..7234662 1008..2167 5800 100 Plus
chrX 22417052 chrX 7229301..7229787 1..487 2435 100 Plus
chrX 22417052 chrX 7233125..7233435 700..1010 1555 100 Plus
chrX 22417052 chrX 7232231..7232448 484..701 1075 99.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:46:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:12:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7341572..7342732 1008..2168 5805 100 Plus
X 23542271 X 7337370..7337856 1..487 2435 100 Plus
X 23542271 X 7341194..7341504 700..1010 1555 100 Plus
X 23542271 X 7340300..7340517 484..701 1075 99.5 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:59:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 7349670..7350830 1008..2168 5805 100 Plus
X 23527363 X 7345468..7345954 1..487 2435 100 Plus
X 23527363 X 7349292..7349602 700..1010 1555 100 Plus
X 23527363 X 7348398..7348615 484..701 1075 99.5 Plus
Blast to na_te.dros performed 2019-03-16 06:12:39
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 6009..6148 15..149 139 57.9 Plus

GH12350.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:13:30 Download gff for GH12350.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 7232235..7232447 488..700 100 -> Plus
chrX 7229301..7229787 1..487 100 -> Plus
chrX 7233126..7233434 701..1009 100 -> Plus
chrX 7233505..7234628 1010..2133 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:37:36 Download gff for GH12350.complete
Subject Subject Range Query Range Percent Splice Strand
CBP-RA 1..897 347..1243 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:29:20 Download gff for GH12350.complete
Subject Subject Range Query Range Percent Splice Strand
CBP-RA 1..897 347..1243 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:04:32 Download gff for GH12350.complete
Subject Subject Range Query Range Percent Splice Strand
CBP-RC 1..1656 347..2002 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:02:44 Download gff for GH12350.complete
Subject Subject Range Query Range Percent Splice Strand
CBP-RA 1..897 347..1243 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:14:39 Download gff for GH12350.complete
Subject Subject Range Query Range Percent Splice Strand
CBP-RC 1..1656 347..2002 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:29:44 Download gff for GH12350.complete
Subject Subject Range Query Range Percent Splice Strand
CBP-RA 1..2167 1..2167 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:29:20 Download gff for GH12350.complete
Subject Subject Range Query Range Percent Splice Strand
CBP-RA 1..2167 1..2167 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:04:32 Download gff for GH12350.complete
Subject Subject Range Query Range Percent Splice Strand
CBP-RA 19..2185 1..2167 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:02:44 Download gff for GH12350.complete
Subject Subject Range Query Range Percent Splice Strand
CBP-RA 1..2167 1..2167 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:14:39 Download gff for GH12350.complete
Subject Subject Range Query Range Percent Splice Strand
CBP-RA 19..2185 1..2167 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:13:30 Download gff for GH12350.complete
Subject Subject Range Query Range Percent Splice Strand
X 7337370..7337856 1..487 100 -> Plus
X 7340304..7340516 488..700 100 -> Plus
X 7341195..7341503 701..1009 100 -> Plus
X 7341574..7342731 1010..2167 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:13:30 Download gff for GH12350.complete
Subject Subject Range Query Range Percent Splice Strand
X 7337370..7337856 1..487 100 -> Plus
X 7340304..7340516 488..700 100 -> Plus
X 7341195..7341503 701..1009 100 -> Plus
X 7341574..7342731 1010..2167 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:13:30 Download gff for GH12350.complete
Subject Subject Range Query Range Percent Splice Strand
X 7337370..7337856 1..487 100 -> Plus
X 7340304..7340516 488..700 100 -> Plus
X 7341195..7341503 701..1009 100 -> Plus
X 7341574..7342731 1010..2167 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:04:32 Download gff for GH12350.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7231403..7231889 1..487 100 -> Plus
arm_X 7234337..7234549 488..700 100 -> Plus
arm_X 7235228..7235536 701..1009 100 -> Plus
arm_X 7235607..7236764 1010..2167 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:40:45 Download gff for GH12350.complete
Subject Subject Range Query Range Percent Splice Strand
X 7345468..7345954 1..487 100 -> Plus
X 7348402..7348614 488..700 100 -> Plus
X 7349293..7349601 701..1009 100 -> Plus
X 7349672..7350829 1010..2167 100   Plus

GH12350.pep Sequence

Translation from 346 to 1242

> GH12350.pep
MAFSIVSRGILRTSREILERNMAATVGVLQQNASPPPNTPISHSDCHRLA
SGGIICGHGAHSLLWHQMPTAVVQAVRQYSKKAGAAKLRREVESDSDSDS
DDEFERRRQKMDSKRSERGDSAFWRRKMRTLHRILDVNHDGVVSFDDFSL
LAKRFSDLGHLTPEVAAEFNDVIKHTWEEQFGEITPYNLVTAEQFLTDLH
HRLNDKKMAKRIGRFLPYLFKAVDFDHTGHLDLEQYKLFFRCLGLTEDDA
AVSFAVIDKNGDGQLSLKEFVHLGRQFFLTEDDSKISKMFWGPLVADH*

GH12350.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:22:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\CBP-PA 448 GF21141-PA 1..297 1..298 1359 89.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:22:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19641-PA 298 GG19641-PA 1..298 1..298 1444 95 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:22:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11881-PA 299 GH11881-PA 1..299 1..298 1146 78.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:00
Subject Length Description Subject Range Query Range Score Percent Strand
CBP-PC 551 CG1435-PC 1..298 1..298 1564 100 Plus
CBP-PA 298 CG1435-PA 1..298 1..298 1564 100 Plus
CBP-PB 231 CG1435-PB 1..231 68..298 1210 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:22:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15669-PA 294 GI15669-PA 1..294 1..298 1164 75.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:22:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12924-PA 391 GA12924-PA 1..255 1..255 1088 86.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:22:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17516-PA 298 GM17516-PA 1..298 1..298 1571 98.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:22:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19204-PA 298 GJ19204-PA 1..298 1..298 1207 80.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:22:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16144-PA 542 GK16144-PA 1..281 1..274 1080 78.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:22:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15713-PA 302 GE15713-PA 1..302 1..298 1542 97.4 Plus

GH12350.hyp Sequence

Translation from 346 to 1242

> GH12350.hyp
MAFSIVSRGILRTSREILERNMAATVGVLQQNASPPPNTPISHSDCHRLA
SGGIICGHGAHSLLWHQMPTAVVQAVRQYSKKAGAAKLRREVESDSDSDS
DDEFERRRQKMDSKRSERGDSAFWRRKMRTLHRILDVNHDGVVSFDDFSL
LAKRFSDLGHLTPEVAAEFNDVIKHTWEEQFGEITPYNLVTAEQFLTDLH
HRLNDKKMAKRIGRFLPYLFKAVDFDHTGHLDLEQYKLFFRCLGLTEDDA
AVSFAVIDKNGDGQLSLKEFVHLGRQFFLTEDDSKISKMFWGPLVADH*

GH12350.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:30:36
Subject Length Description Subject Range Query Range Score Percent Strand
CBP-PA 298 CG1435-PA 1..298 1..298 1564 100 Plus
CBP-PC 551 CG1435-PC 1..298 1..298 1564 100 Plus
CBP-PB 231 CG1435-PB 1..231 68..298 1210 100 Plus