Clone GH12381 Report

Search the DGRC for GH12381

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:123
Well:81
Vector:pOT2
Associated Gene/TranscriptCG12290-RA
Protein status:GH12381.pep: gold
Preliminary Size:3051
Sequenced Size:3079

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12290 2001-01-01 Release 2 assignment
CG12290 2001-09-19 Blastp of sequenced clone
CG12290 2003-01-01 Sim4 clustering to Release 3
CG12290 2008-04-29 Release 5.5 accounting
CG12290 2008-08-15 Release 5.9 accounting
CG12290 2008-12-18 5.12 accounting

Clone Sequence Records

GH12381.complete Sequence

3079 bp (3079 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058351

> GH12381.complete
GAACGCTTCGGAGTGAAGATCGTGCTCGTCCGATCGGTGCGCGTGATAAA
TACACGGCGAACAAAATTGAGTCAAGAGTCAGACGGTCGCAAGACAATTG
ACAAGACACGAAAAATCATAATAAACACAAGTGGAAAAGCAACTGCTTGA
GAGCAAAAAAGAAATTGTTTTTTACAAATCTCGCACGTAAATTAGCAAGC
GTTCGCAAGAAACAAACCGCATACAATACTGAACACAAAAAAAAGGGTAT
TCAACAAAAAACCAAAAATATTTGGCTGCAAATGTGAAGAGACGAGAGAC
AGCGGATATACTACCGAGTGAAATTTGTGTCATAAGCAGAGCCAAAACAA
AACCGAAAAGCCAAATTCAATAAAAGGCCATAAGTGACTGTGAAACTGTA
AAGTGATGTGTGGTAATCGAAAAACAGCATAAAGAATGGCCATAGACCTC
CTGATCCTGGCCCTGCTGCTCGTCTCGTTCCTGATCAACCTGCTGGCGCT
GTGTGCCTTTTGGATAACGCCTGGCTTGAGGACCACCGCCAATCGCTTTA
CGATCAACCTGCTGGCCATCAATCTCATTGGTTGCTGCATCTTGGCCCCC
ACTTTGTTCCTGGGACTGCCGGGAAAGTCTGCGGAGGCATCCACTTCCAA
CGCCGAGACCCTGGAGTTCTTCTCGAAGCCGGGAAACCATCAGGTGATAC
TTCGTCGCAATGGCCAGCTGGTGGAACAGGACGGCGTGGTGGTGCGAAGG
AACATCAGCGAAAACGGCGATACGGTGGAGACCTTCTTCAAGTGCAATGC
CACCTACTGTCGCGAGTTGACCATCGATGAGCGCGGAGATGGTGGCTTTG
TCATCACGGAAACCGAGACACACGAAGAGAATCTCTCGGCCTTTGAGAGC
TTACCCACGGAGGCTCCCATTTTGCCGCCCGTCCAACTGAGATGTTGGTC
CATAGACATGACTGCTGCGCTGGGAGCTCTGGCAGTACTGCTCGTGGTGG
GGGACACCTGGTGTGCCGTTACGGATCCCCTGCGCTACCACAGTCGCATT
TCGGGCGTGAAAACCTGGATCTTCATAGCACTCACCTGGGTGGTGGGCAT
ACTCTTTGGAGCCCTTTCCGCCTTCCGAGTTTTGGACTTTGAGGCGGACG
CCCTGTTCAGCAGACAACGCCGCCTGGCAGTCACGTACTTCAACATCAGC
AGCACCAATAGTATTTTCGGAGTGGTGTACGCCAGTGTCTACTTCATCGT
GATCATCCTCCTGCCCTTCGGCTTCGTGTGCGGAATGTACTGGAGGATAT
TCAGTGAGGCGCGCGGAAATGGGCTGCGCATGCGCCAGAATGGCTCTTCG
CCGCTGCTGCAGAGCGCCTTGAATCTGACGGCTGGCCAGCAGGCGGCTCA
AGCCAACCAGTTCTCCAATAGCTTGTGTGTTCATCGGCATTCCATATCCT
CGGCCAGTTCGCATGGCGGCAACAGCAGCTTGGGCTTGGGCGGTCTGCAA
ATGCAAATTGATCAGCGCCAACAGCCGAGGAGTTCGCCCAGTTGTCTCCG
TCGGGACTCGGCCGCGAAAGTACTTTTGCCCACCATCTCGGATGATGGTG
GCTCAGATGCGGAAAGTGGAGCCGGAGTTCAACTGATGCCCGTACAGGAG
CACTCACTGTCAGATAGAAATCAGAACATTATGCTTACTCTGCAAACAGC
CAGTGGTGAAATAAAGAGGAACTACTCCGCCAGACAGCTGCCCCTGTTGG
GCACTTCTTCGCAGGATCTGAGGGAGACTAATCGTCTGCAGGGCATACGC
CAGGTGCACAGTTCGCCCAATCTCCACAAGTACACGGAACTGCGCCAGGA
CTCGCTCAGTGAGGAGTGTGGTTCTCCGCATCTTTTGGGTCACGCCCAGC
GGCAGCAGCAGCAGCAATTGCACCTGCAACATCAGCAGCAACAGCATCAT
CACCACCAGCAACATCATCCGCACTTCAGTTCGCCGCGCCACCAGCAACA
CGGCCACGCCCTCCAGATACCCGCCATTCATGCCTCCCCCAAGGCTCTGA
GTTACATGAGCTCCTTGCGACACCGTTTGAGCAACGCCAGTTCGCTATTC
AAATACCGTGAGGAGTCGAGAGCAGCCCGCATCAGCATCCTGGTGGTGGT
GATGTTTGTGGTCTCGTACCTGCCCTTCGGACTGCTGGTACTCCTGCAAT
CGCGACTGTCGGCTGCTAACTTTGGCGGATCCTCCCAGCTGGCCATCTTC
ATGATCCTGCTGGCCAATCTCAGTTCGCCATTCATCTTCGCCTACAGGAA
CAAGAGGGTGAGGCGAGGAGTCAAGCGGCTGTTTGGTCTGGATTCGTCGT
CGGGCCTGCAGCGCAACTGCAGCAGCAGTGTAAAGACCAATGGCACCGCA
GGTCCTGCTGCAAGTGGTGCACAATTGCAGCGCAACAGCAGCAAGTTGTC
GCAGTACAGCAGCAACAGCTGCAAGTATCTCACCCCCCAGAGTTCCCTGG
TCAGTCAAGTGCCGGTGCATACGACCTTGACGTTAAGGCCCAACAGCAGC
TGCAGCACCATCATCAATTTCGGTGGCGCCAGGGGCTCAGCGGACTCCGA
TGAGCAGCCACCGGCAACACCACCACCTACTGTGGCAGTTGCTCCACCGC
CCACACGACCGCAGCGCCCCAAGCTGCAGAGGGGCATCACCATCGTTGAG
CACATAGCTATAACACCAACCATGCCCCAAAAGTTCCAGAATCGGCGCGC
CAGGCTCTTCGACATGTTCTTCCGCAGCTCCAAGAAACTGCAGGCGGGCT
GCCAGAGCCAGAGTTTGCCCACTGAGGTCTAAACGGGGGGTTATGATAAC
TATACATATAGGAAGGTAAACAAACACTAAACTTGCTTGCTGAAGAATTC
TAAGAACAGTATTCGTAATTTGTAAGTCTAGCAATTAACAAAGACAACTG
TTTGAATTTGAGTTTTAAGACCAGATCATGCTGTCCTAGAAGCTTCTCAT
GCCAAAAAACAAAACCACAAAGAAAGTCAAACTAGAAAGTTTGAGATGCT
TTAAATTAACAAAAAAAAAAAAAAAAAAA

GH12381.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:23:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG12290-RA 3097 CG12290-RA 19..3097 1..3079 15365 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:45:12
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 22053306..22056365 1..3060 15195 99.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:46:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26230270..26233348 1..3079 15365 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:45:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 25971101..25974179 1..3079 15365 99.9 Plus
Blast to na_te.dros performed 2019-03-16 23:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6693..6946 2343..2610 152 56.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2406..2540 2541..2672 143 61 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6849 2355..2473 133 62.8 Plus

GH12381.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:46:17 Download gff for GH12381.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 22053306..22055201 1..1896 99 == Plus
chr3R 22055273..22056365 1968..3060 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:37:43 Download gff for GH12381.complete
Subject Subject Range Query Range Percent Splice Strand
CG12290-RA 1..2397 436..2832 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:08:03 Download gff for GH12381.complete
Subject Subject Range Query Range Percent Splice Strand
CG12290-RA 1..2397 436..2832 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:49:09 Download gff for GH12381.complete
Subject Subject Range Query Range Percent Splice Strand
CG12290-RA 1..2397 436..2832 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:38:48 Download gff for GH12381.complete
Subject Subject Range Query Range Percent Splice Strand
CG12290-RA 1..2397 436..2832 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:57:52 Download gff for GH12381.complete
Subject Subject Range Query Range Percent Splice Strand
CG12290-RA 1..2397 436..2832 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:58:19 Download gff for GH12381.complete
Subject Subject Range Query Range Percent Splice Strand
CG12290-RA 19..3078 1..3060 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:08:02 Download gff for GH12381.complete
Subject Subject Range Query Range Percent Splice Strand
CG12290-RA 19..3078 1..3060 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:09 Download gff for GH12381.complete
Subject Subject Range Query Range Percent Splice Strand
CG12290-RA 23..3082 1..3060 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:38:48 Download gff for GH12381.complete
Subject Subject Range Query Range Percent Splice Strand
CG12290-RA 19..3078 1..3060 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:57:52 Download gff for GH12381.complete
Subject Subject Range Query Range Percent Splice Strand
CG12290-RA 23..3082 1..3060 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:46:17 Download gff for GH12381.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26230270..26233329 1..3060 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:46:17 Download gff for GH12381.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26230270..26233329 1..3060 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:46:17 Download gff for GH12381.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26230270..26233329 1..3060 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:09 Download gff for GH12381.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22055992..22059051 1..3060 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:16:13 Download gff for GH12381.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25971101..25974160 1..3060 100   Plus

GH12381.pep Sequence

Translation from 435 to 2831

> GH12381.pep
MAIDLLILALLLVSFLINLLALCAFWITPGLRTTANRFTINLLAINLIGC
CILAPTLFLGLPGKSAEASTSNAETLEFFSKPGNHQVILRRNGQLVEQDG
VVVRRNISENGDTVETFFKCNATYCRELTIDERGDGGFVITETETHEENL
SAFESLPTEAPILPPVQLRCWSIDMTAALGALAVLLVVGDTWCAVTDPLR
YHSRISGVKTWIFIALTWVVGILFGALSAFRVLDFEADALFSRQRRLAVT
YFNISSTNSIFGVVYASVYFIVIILLPFGFVCGMYWRIFSEARGNGLRMR
QNGSSPLLQSALNLTAGQQAAQANQFSNSLCVHRHSISSASSHGGNSSLG
LGGLQMQIDQRQQPRSSPSCLRRDSAAKVLLPTISDDGGSDAESGAGVQL
MPVQEHSLSDRNQNIMLTLQTASGEIKRNYSARQLPLLGTSSQDLRETNR
LQGIRQVHSSPNLHKYTELRQDSLSEECGSPHLLGHAQRQQQQQLHLQHQ
QQQHHHHQQHHPHFSSPRHQQHGHALQIPAIHASPKALSYMSSLRHRLSN
ASSLFKYREESRAARISILVVVMFVVSYLPFGLLVLLQSRLSAANFGGSS
QLAIFMILLANLSSPFIFAYRNKRVRRGVKRLFGLDSSSGLQRNCSSSVK
TNGTAGPAASGAQLQRNSSKLSQYSSNSCKYLTPQSSLVSQVPVHTTLTL
RPNSSCSTIINFGGARGSADSDEQPPATPPPTVAVAPPPTRPQRPKLQRG
ITIVEHIAITPTMPQKFQNRRARLFDMFFRSSKKLQAGCQSQSLPTEV*

GH12381.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:02:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18953-PA 809 GF18953-PA 13..809 13..798 3327 83.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:02:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11470-PA 797 GG11470-PA 1..797 1..798 4144 98.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:02:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19411-PA 797 GH19411-PA 1..797 1..798 2824 75.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG12290-PB 798 CG12290-PB 1..798 1..798 4085 100 Plus
CG12290-PA 798 CG12290-PA 1..798 1..798 4085 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:02:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22614-PA 812 GI22614-PA 1..812 1..798 2993 76.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:02:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21836-PA 823 GL21836-PA 1..823 1..798 3026 78.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:02:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11536-PA 833 GA11536-PA 1..833 1..798 3140 80.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10314-PA 799 GM10314-PA 1..799 1..798 4191 99 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:02:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21275-PA 799 GD21275-PA 1..799 1..798 4202 99.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:02:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23860-PA 811 GJ23860-PA 1..811 1..798 2799 75.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13966-PA 805 GK13966-PA 1..805 1..798 2866 77.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:02:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23661-PA 798 GE23661-PA 1..798 1..798 4128 97.7 Plus

GH12381.hyp Sequence

Translation from 435 to 2831

> GH12381.hyp
MAIDLLILALLLVSFLINLLALCAFWITPGLRTTANRFTINLLAINLIGC
CILAPTLFLGLPGKSAEASTSNAETLEFFSKPGNHQVILRRNGQLVEQDG
VVVRRNISENGDTVETFFKCNATYCRELTIDERGDGGFVITETETHEENL
SAFESLPTEAPILPPVQLRCWSIDMTAALGALAVLLVVGDTWCAVTDPLR
YHSRISGVKTWIFIALTWVVGILFGALSAFRVLDFEADALFSRQRRLAVT
YFNISSTNSIFGVVYASVYFIVIILLPFGFVCGMYWRIFSEARGNGLRMR
QNGSSPLLQSALNLTAGQQAAQANQFSNSLCVHRHSISSASSHGGNSSLG
LGGLQMQIDQRQQPRSSPSCLRRDSAAKVLLPTISDDGGSDAESGAGVQL
MPVQEHSLSDRNQNIMLTLQTASGEIKRNYSARQLPLLGTSSQDLRETNR
LQGIRQVHSSPNLHKYTELRQDSLSEECGSPHLLGHAQRQQQQQLHLQHQ
QQQHHHHQQHHPHFSSPRHQQHGHALQIPAIHASPKALSYMSSLRHRLSN
ASSLFKYREESRAARISILVVVMFVVSYLPFGLLVLLQSRLSAANFGGSS
QLAIFMILLANLSSPFIFAYRNKRVRRGVKRLFGLDSSSGLQRNCSSSVK
TNGTAGPAASGAQLQRNSSKLSQYSSNSCKYLTPQSSLVSQVPVHTTLTL
RPNSSCSTIINFGGARGSADSDEQPPATPPPTVAVAPPPTRPQRPKLQRG
ITIVEHIAITPTMPQKFQNRRARLFDMFFRSSKKLQAGCQSQSLPTEV*

GH12381.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:31:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG12290-PB 798 CG12290-PB 1..798 1..798 4085 100 Plus
CG12290-PA 798 CG12290-PA 1..798 1..798 4085 100 Plus