Clone GH12404 Report

Search the DGRC for GH12404

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:124
Well:4
Vector:pOT2
Associated Gene/TranscriptCG42724-RE
Protein status:GH12404.pep: gold
Preliminary Size:2367
Sequenced Size:2489

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15187 2001-01-01 Release 2 assignment
CG33097 2001-11-02 Blastp of sequenced clone
CG33097 2003-01-01 Sim4 clustering to Release 3
CG33097 2008-04-29 Release 5.5 accounting
CG33097 2008-08-15 Release 5.9 accounting
CG33097 2008-12-18 5.12 accounting

Clone Sequence Records

GH12404.complete Sequence

2489 bp (2489 high quality bases) assembled on 2001-11-02

GenBank Submission: AY069106

> GH12404.complete
CAGAAAAGTGTAGAAAATTTTCAGGGGTTTTTAAAACGAAAAGTAAGAGG
TTGCGTACAGTTAGATTTGTGTGCCATGGATGCGAGCTTAGAGGAGAGCA
TGGATAGCGATGGCGCCAGTTCGCCGATTACCAAGACGGAGGCAACGGAA
TCTCCGCCAGAAGCGGGTCTCAATGGAAACGGCAGTGGTAGTGGTAGTAC
CAGCCAGGAGACCCCAAATTATGGCGTTGCTATACTCAAGGAAAAACCCA
GCGAGGCCCATAGGAGCAAGCCCTTCAATGCGTTTAGTGGTCGTCCCATC
GGGGAGCACACCGCCCAGCAGCAGGCGCTGCAGCAACAACAACTGCAGCA
ACAACAACAGCCACAGCAGCCGCAGCAACAAGCTCCTTCCGGAGCAAATG
GAGTCACAGGACCCCCGGAAATCTGGGTGGAAACCAAGGCGGAGGACGGT
CGCTCATATTATTACCATGCGGTAACTAGGGAAACCACTTGGTCTCGACC
CGATGGCCCCGCTGTCAAGATAATGACCCAGGCAGAGGTGGAGGAGATGG
CCAAGCGACCTGCCCAGGCCGCGAAAACGGAAGCCAAGGCAGGCGAGACG
TCGGTCGAGATTCCGCCAGTGTCGTCACATCTTACCTCACAACCTCCGCC
GCACCTGATGAGCCAGCCACCACCCAATGCGGCAGCACCGCTGCTTTCCC
AGCCACCACCCAATGTACGGCAACAGCCACCACCAATGTTCCAGCCACCT
GGAATGCAGGCGCCTCCTGGGTTCGGACAGCCGCCGTTTTGTATGCCACC
TCCAACTTACGGATTTCCTGGAGGACCGGCACCAGCTGGGGCACCTTGGG
GCGTGGGCATTCCGCCTTGGCAGCAACAGCAGCACATGCAAGACAAGCCA
GCCAAGTCGCTAATCATTAAGCCGGGTGTTATCGATCCGGCGGTTATAGC
GCGAGCAGCAGAGTGGTCAGAGCATCGTGCTCCCGATGGAAGACCGTACT
ATTTCCACGCCGGTCGAGGAGAGAGTGTCTGGGAGAAACCGCAGGCGCTG
AGGGACATGGAGGCCGCTCGCATGGCTGCCCACTCGGGCGTTGCGCCCGC
TGTGGCAACAGCTCCGTCGGGACTACCACCACACTTGCTACCCAACCCTA
TGATGCATATGCCACCAGGATCAGGGCCGCCGGGATTTGATCCGCATGCT
GCTTTTGCGGCTGCTGCTGCAGCAATGAAAGCCAATTCGGAAAACACTAA
GGCTGCACAGGCAGCTGCTTTGGAGAAAGAGGCTAAAAAGGCGGCGGAGG
AGAAGCGAAAAAAGGAGGAGGAGCAGAAGAAGGCTGCGGCATCAGCCAAG
CAAACGGACAAGAGTCGACCTGTGACAAGTACGCCCATCGCTGGAACGCC
ATGGTGTGTCGTATGGACTGGAGATTCCCGCGTCTTCTTTTACAATCCGT
CAACTAGGACTTCGGTTTGGGATCGCCCCGAGGACTTGTTGAATCGTGAG
GACGTTGACAAAGCGGTAAACGAACGTCCGGAGCAACTGAAGACTCCGCA
AGAGAAGTCGGCTGAAGCCGAACAGAAGTCCGGCGAGGAAGCAAATCAAG
AGCAGGCTAAATCGCAAGTTCAAGCCCAGCAACTGGATCAGGTGCAGAGG
GTGGATGCGGATGATGATGACGACGACGAGGTTATCAAGATACGCACAGA
GTCTGAGTCTAGTGTGGAAGAGGTGCCAACCAAACGAGTTCGAATGATTT
CCAAGTCGAAGCGGGCAGAGGATGCCGCCCTAGAGGCTGAGCAGCGGGCG
GCCAAGGAGCGGGCCTTAGTACCACTAGAAATGCGCGTCACCCAATTCAA
GGAAATGCTTCGAGAGAAGGACGTATCGGCTTTCAGCACTTGGGAGAAGG
AGCTTCACAAGATCGTGTTCGACCCGCGGTATCTTCTGCTGACTTCGAAG
GAACGCAAACAGGTATTTGAAAAGTATGTGAAGGATCGGGCCGAGGAGGA
GCGTAAGGAGAAGCGGAACAAGATGCGCCAGAAGCGGGAGGACTTCCGCA
GCCTAATGGAAGAAGCCAGGCTGCACGGAAAATCCTCATTCTCGGAGTTT
AGCCAGAGGAACGCCAAGGATGAACGGTATCGGGCCATCGAGAAGGTTCG
CGAACGAGAGAGTCTCTTCAACGAGTACATCGTGGAGGTGCGGCGCCGCG
AAAAGGAGGACAAGCTGTTGAAGAAAGAGCAGCCACTAGCTAGCAGGTTA
CAGCACAAATGCACCACCCAAAACACCAAAATACACAAGAGCAACAGCAT
CGAGAACCACCTGTACAACACTCTCGACGGTCTATTCCGCCCGCCGTCTG
CCATCGCCGTCCACTGATCTACTTGACCACGCACATGTTTGCAATCTGTG
TGGTGAGTTACTTGAAACATAACAAGCAAAAACATTTAAATTTGTTTTTC
TGCAATAAGAGACAAATTTGGAAAAAAAAAAAAAAAAAA

GH12404.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:01:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG33097-RA 2599 CG33097-RA 129..2599 1..2471 12355 100 Plus
CG33097-RB 2915 CG33097-RB 129..2209 1..2081 10405 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:36:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 2192025..2193510 1747..262 7430 100 Minus
chr3R 27901430 chr3R 2191631..2191964 2081..1748 1670 100 Minus
chr3R 27901430 chr3R 2193574..2193837 264..1 1305 99.6 Minus
chr3R 27901430 chr3R 2190163..2190403 2471..2231 1205 100 Minus
chr3R 27901430 chr3R 2190681..2190831 2232..2082 755 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:46:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:36:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6366348..6367833 1747..262 7430 100 Minus
3R 32079331 3R 6365954..6366287 2081..1748 1670 100 Minus
3R 32079331 3R 6367897..6368160 264..1 1320 100 Minus
3R 32079331 3R 6364475..6364727 2483..2231 1265 100 Minus
3R 32079331 3R 6365004..6365154 2232..2082 755 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:26:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 6107179..6108664 1747..262 7430 100 Minus
3R 31820162 3R 6106785..6107118 2081..1748 1670 100 Minus
3R 31820162 3R 6108728..6108991 264..1 1320 100 Minus
3R 31820162 3R 6105306..6105558 2483..2231 1265 100 Minus
3R 31820162 3R 6105835..6105985 2232..2082 755 100 Minus
Blast to na_te.dros performed 2019-03-16 09:36:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2348..2383 1223..1188 117 80.6 Minus

GH12404.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:37:48 Download gff for GH12404.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 2190163..2190401 2233..2471 100 <- Minus
chr3R 2190681..2190831 2082..2232 100 <- Minus
chr3R 2191631..2191964 1748..2081 100 <- Minus
chr3R 2192025..2193508 264..1747 100 <- Minus
chr3R 2193575..2193837 1..263 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:37:48 Download gff for GH12404.complete
Subject Subject Range Query Range Percent Splice Strand
CG33097-RA 1..2292 76..2367 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:35:37 Download gff for GH12404.complete
Subject Subject Range Query Range Percent Splice Strand
CG42724-RI 1..2292 76..2367 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:52:02 Download gff for GH12404.complete
Subject Subject Range Query Range Percent Splice Strand
CG42724-RE 1..2292 76..2367 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:04:13 Download gff for GH12404.complete
Subject Subject Range Query Range Percent Splice Strand
CG33097-RA 1..2292 76..2367 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:41:58 Download gff for GH12404.complete
Subject Subject Range Query Range Percent Splice Strand
CG42724-RL 1..2292 76..2367 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:15:38 Download gff for GH12404.complete
Subject Subject Range Query Range Percent Splice Strand
CG33097-RA 129..2599 1..2471 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:35:37 Download gff for GH12404.complete
Subject Subject Range Query Range Percent Splice Strand
CG42724-RE 129..2599 1..2471 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:02 Download gff for GH12404.complete
Subject Subject Range Query Range Percent Splice Strand
CG42724-RE 30..2500 1..2471 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:04:13 Download gff for GH12404.complete
Subject Subject Range Query Range Percent Splice Strand
CG33097-RA 129..2599 1..2471 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:41:58 Download gff for GH12404.complete
Subject Subject Range Query Range Percent Splice Strand
CG42724-RL 30..2500 1..2471 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:37:48 Download gff for GH12404.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6364487..6364725 2233..2471 100 <- Minus
3R 6365004..6365154 2082..2232 100 <- Minus
3R 6365954..6366287 1748..2081 100 <- Minus
3R 6366348..6367831 264..1747 100 <- Minus
3R 6367898..6368160 1..263 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:37:48 Download gff for GH12404.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6364487..6364725 2233..2471 100 <- Minus
3R 6365004..6365154 2082..2232 100 <- Minus
3R 6365954..6366287 1748..2081 100 <- Minus
3R 6366348..6367831 264..1747 100 <- Minus
3R 6367898..6368160 1..263 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:37:48 Download gff for GH12404.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6364487..6364725 2233..2471 100 <- Minus
3R 6365004..6365154 2082..2232 100 <- Minus
3R 6365954..6366287 1748..2081 100 <- Minus
3R 6366348..6367831 264..1747 100 <- Minus
3R 6367898..6368160 1..263 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:02 Download gff for GH12404.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2190209..2190447 2233..2471 100 <- Minus
arm_3R 2190726..2190876 2082..2232 100 <- Minus
arm_3R 2191676..2192009 1748..2081 100 <- Minus
arm_3R 2192070..2193553 264..1747 100 <- Minus
arm_3R 2193620..2193882 1..263 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:40:19 Download gff for GH12404.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6105318..6105556 2233..2471 100 <- Minus
3R 6105835..6105985 2082..2232 100 <- Minus
3R 6106785..6107118 1748..2081 100 <- Minus
3R 6107179..6108662 264..1747 100 <- Minus
3R 6108729..6108991 1..263 100   Minus

GH12404.hyp Sequence

Translation from 1 to 2366

> GH12404.hyp
QKSVENFQGFLKRKVRGCVQLDLCAMDASLEESMDSDGASSPITKTEATE
SPPEAGLNGNGSGSGSTSQETPNYGVAILKEKPSEAHRSKPFNAFSGRPI
GEHTAQQQALQQQQLQQQQQPQQPQQQAPSGANGVTGPPEIWVETKAEDG
RSYYYHAVTRETTWSRPDGPAVKIMTQAEVEEMAKRPAQAAKTEAKAGET
SVEIPPVSSHLTSQPPPHLMSQPPPNAAAPLLSQPPPNVRQQPPPMFQPP
GMQAPPGFGQPPFCMPPPTYGFPGGPAPAGAPWGVGIPPWQQQQHMQDKP
AKSLIIKPGVIDPAVIARAAEWSEHRAPDGRPYYFHAGRGESVWEKPQAL
RDMEAARMAAHSGVAPAVATAPSGLPPHLLPNPMMHMPPGSGPPGFDPHA
AFAAAAAAMKANSENTKAAQAAALEKEAKKAAEEKRKKEEEQKKAAASAK
QTDKSRPVTSTPIAGTPWCVVWTGDSRVFFYNPSTRTSVWDRPEDLLNRE
DVDKAVNERPEQLKTPQEKSAEAEQKSGEEANQEQAKSQVQAQQLDQVQR
VDADDDDDDEVIKIRTESESSVEEVPTKRVRMISKSKRAEDAALEAEQRA
AKERALVPLEMRVTQFKEMLREKDVSAFSTWEKELHKIVFDPRYLLLTSK
ERKQVFEKYVKDRAEEERKEKRNKMRQKREDFRSLMEEARLHGKSSFSEF
SQRNAKDERYRAIEKVRERESLFNEYIVEVRRREKEDKLLKKEQPLASRL
QHKCTTQNTKIHKSNSIENHLYNTLDGLFRPPSAIAVH*

GH12404.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG42724-PI 763 CG42724-PI 1..763 26..788 3987 100 Plus
CG42724-PE 763 CG42724-PE 1..763 26..788 3987 100 Plus
CG42724-PL 763 CG42724-PL 1..763 26..788 3987 100 Plus
CG42724-PM 761 CG42724-PM 1..742 26..754 3754 97.6 Plus
CG42724-PK 1123 CG42724-PK 1..719 26..744 3752 100 Plus

GH12404.pep Sequence

Translation from 75 to 2366

> GH12404.pep
MDASLEESMDSDGASSPITKTEATESPPEAGLNGNGSGSGSTSQETPNYG
VAILKEKPSEAHRSKPFNAFSGRPIGEHTAQQQALQQQQLQQQQQPQQPQ
QQAPSGANGVTGPPEIWVETKAEDGRSYYYHAVTRETTWSRPDGPAVKIM
TQAEVEEMAKRPAQAAKTEAKAGETSVEIPPVSSHLTSQPPPHLMSQPPP
NAAAPLLSQPPPNVRQQPPPMFQPPGMQAPPGFGQPPFCMPPPTYGFPGG
PAPAGAPWGVGIPPWQQQQHMQDKPAKSLIIKPGVIDPAVIARAAEWSEH
RAPDGRPYYFHAGRGESVWEKPQALRDMEAARMAAHSGVAPAVATAPSGL
PPHLLPNPMMHMPPGSGPPGFDPHAAFAAAAAAMKANSENTKAAQAAALE
KEAKKAAEEKRKKEEEQKKAAASAKQTDKSRPVTSTPIAGTPWCVVWTGD
SRVFFYNPSTRTSVWDRPEDLLNREDVDKAVNERPEQLKTPQEKSAEAEQ
KSGEEANQEQAKSQVQAQQLDQVQRVDADDDDDDEVIKIRTESESSVEEV
PTKRVRMISKSKRAEDAALEAEQRAAKERALVPLEMRVTQFKEMLREKDV
SAFSTWEKELHKIVFDPRYLLLTSKERKQVFEKYVKDRAEEERKEKRNKM
RQKREDFRSLMEEARLHGKSSFSEFSQRNAKDERYRAIEKVRERESLFNE
YIVEVRRREKEDKLLKKEQPLASRLQHKCTTQNTKIHKSNSIENHLYNTL
DGLFRPPSAIAVH*

GH12404.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:33:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16658-PA 816 GF16658-PA 1..816 1..763 2380 73.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:33:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10500-PA 771 GG10500-PA 1..771 1..763 3219 92.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:33:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18087-PA 767 GH18087-PA 1..750 1..719 2433 73.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG42724-PI 763 CG42724-PI 1..763 1..763 3987 100 Plus
CG42724-PE 763 CG42724-PE 1..763 1..763 3987 100 Plus
CG42724-PL 763 CG42724-PL 1..763 1..763 3987 100 Plus
CG42724-PM 761 CG42724-PM 1..742 1..729 3754 97.6 Plus
CG42724-PK 1123 CG42724-PK 1..719 1..719 3752 100 Plus
CG42724-PC 1123 CG42724-PC 1..719 1..719 3752 100 Plus
CG42724-PG 669 CG42724-PG 1..669 1..669 3506 100 Plus
CG3542-PA 806 CG3542-PA 54..364 441..717 196 24.1 Plus
CG3542-PA 806 CG3542-PA 1..517 195..718 184 22 Plus
CG2839-PA 826 CG2839-PA 306..620 385..719 183 22.6 Plus
CG11835-PD 795 CG11835-PD 311..682 55..424 159 25.8 Plus
CG11835-PC 795 CG11835-PC 311..682 55..424 159 25.8 Plus
CG11835-PB 795 CG11835-PB 311..682 55..424 159 25.8 Plus
CG11835-PA 795 CG11835-PA 311..682 55..424 159 25.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:33:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24587-PA 771 GI24587-PA 1..723 1..732 2319 71.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:33:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22066-PA 1110 GL22066-PA 1..748 1..755 2318 73.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:33:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27365-PD 1145 GA27365-PD 1..783 1..755 2356 76.1 Plus
Dpse\GA27365-PE 781 GA27365-PE 1..741 1..719 2339 79.5 Plus
Dpse\GA27365-PF 587 GA27365-PF 1..583 1..561 1522 74.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:33:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10557-PA 511 GM10557-PA 38..511 290..763 2471 98.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:33:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19549-PA 763 GD19549-PA 1..763 1..763 3976 98.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:33:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22653-PA 1124 GJ22653-PA 1..727 1..719 2375 74.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:33:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10926-PA 1117 GK10926-PA 65..763 54..755 2119 70.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24104-PA 774 GE24104-PA 1..774 1..763 3158 92.2 Plus