Clone GH12423 Report

Search the DGRC for GH12423

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:124
Well:23
Vector:pOT2
Associated Gene/TranscriptCG14186-RA
Protein status:GH12423.pep: gold
Preliminary Size:3425
Sequenced Size:3528

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14186 2001-01-01 Release 2 assignment
CG14186 2002-06-07 Blastp of sequenced clone
CG14186 2003-01-01 Sim4 clustering to Release 3
CG14186 2008-04-29 Release 5.5 accounting
CG14186 2008-08-15 Release 5.9 accounting
CG14186 2008-12-18 5.12 accounting

Clone Sequence Records

GH12423.complete Sequence

3528 bp (3528 high quality bases) assembled on 2002-06-07

GenBank Submission: AY119506

> GH12423.complete
CGAACGCGGTGCTTTGGTTTCGGTTCCGTTCGCCTCGTGAATATTTTTTT
AAGGAATATAAGAACAATGCACGGATAACGCAGTAATCGAGTAAAAATCG
AACGCAGTACCGTAACAAAGAGATTGATCTATCCGATAAGTGATCAGTTA
TTCGGTCGCCAATGATATCCGTATGTGCAGAGTGCGCTGAAGTGGAGCCT
TGAGGAAATGCCACCAGCTCGCAGCTGAGCTGCATTCGCTGATTGTCGTT
GTGGTCGTGTCCTCTCGCGGTTGTGTGTGTGTGTGTGTGGGTGTGCACTG
TGTTATTTGGGTCAAAAGCTGCAGCAGCACAAAGTTCCCACTCCCATTCC
CGTTTCCGTGCCCGTTCCCAGGGGGTGTCCACCTGTTATGCAGCTGGCCT
AGTGGCTCAACTCGGCTCGGATCGGATCTAGCATCCCACAAGTCCAAATG
GAGGCAAAGGTGCACCGCCAGCATCAACGGCATCGTCGCACGGAGGCGCG
ACAGCGGCGCCTGGAACGGGAGGCGGTGGCTACGGGAGCGGCAGCTCCAA
CGCCCACCACGCCCGAGCGGGCAGAGGCCTTGGACTGTGCCACAGCCCTC
AACGAGGGCGTGGTATCCGCGGATCCGGGCGGCAGCGGCGGTACGCCAAG
CAGTGCGGGTCGCATCAGTGCCCAGAGCTCGGCGGACAGCATAGAGCTGG
TGGGTTCGCCCAGCCAGACGTCGCAGCAAACGGTGGTGCTGGTCAACGGC
CACGCCCCGCCGGGCCAGGAGGAGGGGGAGGAGGAGTCGCCACTGGGCGC
AGGCAATACCAGGGACTCACCGCCGCCGCCCAAGCAGAGCGATGGCAGTC
GCAACTCATCCGGCGATGCGATGAGTCTGCGGGAGACCCTGCAGCAACTA
CCGGCCACCCATCACCATCGGTCCAGGCGAACTCACTCACCTGCTGATCC
CGATGCGTCCTTTCATCGCGGAATACTTGGGTACATGGACCGGGAGCTCA
AGCAGAGCTCTCCCACGCCCTCCGCCCCCGCCGGAACCGGAAACGGAACT
GGAAACGGAACTAGCACGGGCGCATCGAGAAAACAGCAGTCCCTCTCCGA
CCCACAGGCCAGTCCCGCCCAGCGATCCCTGCGTTCGAGGAGCAGCTTCG
ACAAGAGTCCGCGGCGCAAAAGGAGCAAGTCGGAGTCTCGGCGGAGACGC
GAACGGAAGCTAATAGCCGCCGGAGAGATGGAGGTCCGGCAGGCCAACGA
AACCCTGATGCGGTACCTCAAGCAGTGCTCCGACATGCACGACGCCTCGC
TTTCCGGCGAACTCGAGATCGACCAGAGCCTCGAGGAGAGACGCGTCCAC
CGGAAGACCAAGTCGCAAAGGGACAAGCGGGGCCAGCTAATCTCCAAGTT
GTACTCAGCAGGCGGTATATCCTCGATTCTGAAGGAGCTGGCCGATGACA
TAGCTCCGGCCGATGGCGAGGAGATCTACAACCCATTCACGCCGGTCGTC
TCGCCCACGGACGATGCGCCCGCGCACATCGACAAGATGTTCCTGCAGAC
GTCATCCGGATATCGACCCGTGGAGCACAGCTACTACAAGCGCTCCTTCC
TGGGGGCGGCTGTTCGTGGATCCGCCGGAATTTCGGCATCCGGCGGCGGA
GGTGGATGTGCAGGCGGTGGCGGAGGTCGCCTCGATGGCATCTCGGCCGC
GGAGCTTGGAGGCGCCGGTCGCCTCTTCCGCTCCAGCGGCAGCCACGCCC
ACGGCGGCGACAGAATGGGCGGAAATGGAAGTGGGCGTGGCAGCTACGGT
GATACCCGCTGTTTGCTGGATGCCGACTTTAATCGCAATGGTATCACCAG
CAACATACAACTAGCCTGTGTAGTTCAACGAATCTGGCTGCTCATCTCGA
ACATATGCCACGGCTTGCTAGCCGGTCTAGCTCTGGCCCATCTACTCTTC
GTGCTGAGCAGCCACCCCATGGACTGGGCCAAGGTTATCAATGGCATGAG
TCTTGCGGGCGAGACGGTGTCATCAACGGCCCAACCCCCAGCCGCATCGA
CACCATCGGCGATAGACATCGATTCCGGCGATCGGGGAACGGAGTCGGGC
GAATCCTCATCCCCATCCGCAGCAGCATCCGGACTGGCCCTGATAAGTGA
CTACGCCGGATTTGCGGAGATCTACTTAAATACCTTCTACTGCTTGGCCA
TAATCTGTCTGGTTTCCGTTTTCGATCGGATGGACATCTGTCGCTGGAGC
TTCTCGAATGCCAGCGAACTGATCTCGTTTCGGTGGCTCATCATCACCAT
GATCTATGTGGCGACAATAATCCTAGCCATCTGCTCCGATTCCATCGACG
AGAAGCTGTACCTGTTCAACAACAATGCCAACATAACGCTGACGCAACAG
GAGATGCTGAGCAACAGTGTGCAGAGCGTGTGGAGCAGCCTGTCGGTGAC
GAGGAGCATTGCCGCCATATCCGGGTGGATTATGATCGGACTGACGCCGC
AGGAGGATATGCTATATGAGCACCTGGTGGACCTCACCAAATATCAGTTG
ACAAATAATTGAATTTAAGGCGACAAGTGTAAATATCGAACTCTTAGCAG
CTGTTGTTCAGTTATCGGCTTTTTATATGTACGGCATAATCGAAACGCAA
TAGAACTCTTATGCATACCCAAATCTTAAGCTTTAAAGTCGTCTCTTAAG
GATTCACACTGATGCCCTTCGCTGGCCGCTAGAACAAACCCAAGGGGGAA
CCGATAATATGACAACCAGAGAACTCAATGGTTAACCTTGAAACTAGTTA
ACTAAGCAAATATAGTGAATACTCGTACTGTTAAAGAGGAAAGAATATGA
AATACCTATATTTACCAGATAGCAGATAGATGTATTCATGTACTTACGCA
TATATACAATATGTTACCTACATAGATATACACATAATTGATATACATTA
CAAACGCGAGTATAGAAATATTTACAATTATTGAAATCATTTTACTCACA
CATATCGTCTTAAGATACAGAATCTTTTGGTTTTTTTTAAATCGTTGCGG
CACTTTTACGGCAAAGGCTTCCCAAATTAGATCCTCAGTCGATTAGGATC
GCCTAGATTAAGTATAATTTTAGCGAATGTGTTTTGTACAATATTTGCAT
CCCGCAAACGTAGAAGTGTATATTAGTTATTTACATTGTTCAATTCAAGT
TTTAGGTAATGCCTCTTGGTTACATTCTTGATTTTGCAGTTAGTAAAACA
TTTGTTACACCTTCTTTCCTTTAGATGCGTTTACGTGGCAGTTTAAGCTT
CTACCTGAGCTGTATATAAACCGAGTGCAATAAAATAACGAATATTAAAG
TTTAATTATACACTAACCAATATACAGAGGCAAATGTAATAAAAACATAT
AGACAAACGAATCGATCAAAGCGGATGACAAGGAAATCTCATTGTAAACT
TGTATATAAAAAATATAAACGCAAATAAACAAAAATAATGTATAAAGGCA
AGAAAAAAAAAAAAAAAAAAAAAAAAAA

GH12423.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:52:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG14186-RA 3583 CG14186-RA 79..3583 1..3505 17525 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20091692..20093078 1393..1 6780 99.3 Minus
chr3L 24539361 chr3L 20087368..20088465 3502..2406 5425 99.8 Minus
chr3L 24539361 chr3L 20090509..20090950 1835..1394 2165 99.3 Minus
chr3L 24539361 chr3L 20089887..20090288 2229..1828 1980 99.5 Minus
chr3L 24539361 chr3L 20088528..20088706 2406..2228 880 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:46:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:34:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20102415..20103807 1393..1 6965 100 Minus
3L 28110227 3L 20098081..20099180 3505..2406 5500 100 Minus
3L 28110227 3L 20101224..20101665 1835..1394 2210 100 Minus
3L 28110227 3L 20100602..20101003 2229..1828 1980 99.5 Minus
3L 28110227 3L 20099243..20099421 2406..2228 895 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:24:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20095515..20096907 1393..1 6965 100 Minus
3L 28103327 3L 20091181..20092280 3505..2406 5500 100 Minus
3L 28103327 3L 20094324..20094765 1835..1394 2210 100 Minus
3L 28103327 3L 20093702..20094103 2229..1828 1980 99.5 Minus
3L 28103327 3L 20092343..20092521 2406..2228 895 100 Minus
Blast to na_te.dros performed 2019-03-15 15:34:31
Subject Length Description Subject Range Query Range Score Percent Strand
Circe 7450 Circe CIRC 7450bp 6846..7013 3331..3495 148 57.6 Plus
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 689..805 3383..3496 145 63 Plus

GH12423.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:35:32 Download gff for GH12423.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20087368..20088464 2407..3502 99 <- Minus
chr3L 20088528..20088705 2229..2406 99 <- Minus
chr3L 20089888..20090280 1836..2228 100 <- Minus
chr3L 20090509..20090950 1394..1835 99 <- Minus
chr3L 20091692..20093078 1..1393 95   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:37:54 Download gff for GH12423.complete
Subject Subject Range Query Range Percent Splice Strand
CG14186-RA 1..2115 448..2562 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:28:54 Download gff for GH12423.complete
Subject Subject Range Query Range Percent Splice Strand
CG14186-RA 1..2115 448..2562 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:32:45 Download gff for GH12423.complete
Subject Subject Range Query Range Percent Splice Strand
CG14186-RA 1..2115 448..2562 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:19:14 Download gff for GH12423.complete
Subject Subject Range Query Range Percent Splice Strand
CG14186-RA 1..2115 448..2562 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:09:49 Download gff for GH12423.complete
Subject Subject Range Query Range Percent Splice Strand
CG14186-RA 1..2115 448..2562 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:57:59 Download gff for GH12423.complete
Subject Subject Range Query Range Percent Splice Strand
CG14186-RA 1..3502 1..3502 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:28:54 Download gff for GH12423.complete
Subject Subject Range Query Range Percent Splice Strand
CG14186-RA 1..3502 1..3502 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:32:45 Download gff for GH12423.complete
Subject Subject Range Query Range Percent Splice Strand
CG14186-RA 21..3522 1..3502 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:19:14 Download gff for GH12423.complete
Subject Subject Range Query Range Percent Splice Strand
CG14186-RA 1..3502 1..3502 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:09:49 Download gff for GH12423.complete
Subject Subject Range Query Range Percent Splice Strand
CG14186-RA 21..3522 1..3502 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:35:32 Download gff for GH12423.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20098084..20099179 2407..3502 100 <- Minus
3L 20099243..20099420 2229..2406 100 <- Minus
3L 20100603..20100995 1836..2228 100 <- Minus
3L 20101224..20101665 1394..1835 100 <- Minus
3L 20102415..20103807 1..1393 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:35:32 Download gff for GH12423.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20098084..20099179 2407..3502 100 <- Minus
3L 20099243..20099420 2229..2406 100 <- Minus
3L 20100603..20100995 1836..2228 100 <- Minus
3L 20101224..20101665 1394..1835 100 <- Minus
3L 20102415..20103807 1..1393 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:35:32 Download gff for GH12423.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20098084..20099179 2407..3502 100 <- Minus
3L 20099243..20099420 2229..2406 100 <- Minus
3L 20100603..20100995 1836..2228 100 <- Minus
3L 20101224..20101665 1394..1835 100 <- Minus
3L 20102415..20103807 1..1393 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:32:45 Download gff for GH12423.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20092343..20092520 2229..2406 100 <- Minus
arm_3L 20093703..20094095 1836..2228 100 <- Minus
arm_3L 20091184..20092279 2407..3502 100 <- Minus
arm_3L 20094324..20094765 1394..1835 100 <- Minus
arm_3L 20095515..20096907 1..1393 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:52:46 Download gff for GH12423.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20095515..20096907 1..1393 100   Minus
3L 20091184..20092279 2407..3502 100 <- Minus
3L 20092343..20092520 2229..2406 100 <- Minus
3L 20093703..20094095 1836..2228 100 <- Minus
3L 20094324..20094765 1394..1835 100 <- Minus

GH12423.pep Sequence

Translation from 447 to 2561

> GH12423.pep
MEAKVHRQHQRHRRTEARQRRLEREAVATGAAAPTPTTPERAEALDCATA
LNEGVVSADPGGSGGTPSSAGRISAQSSADSIELVGSPSQTSQQTVVLVN
GHAPPGQEEGEEESPLGAGNTRDSPPPPKQSDGSRNSSGDAMSLRETLQQ
LPATHHHRSRRTHSPADPDASFHRGILGYMDRELKQSSPTPSAPAGTGNG
TGNGTSTGASRKQQSLSDPQASPAQRSLRSRSSFDKSPRRKRSKSESRRR
RERKLIAAGEMEVRQANETLMRYLKQCSDMHDASLSGELEIDQSLEERRV
HRKTKSQRDKRGQLISKLYSAGGISSILKELADDIAPADGEEIYNPFTPV
VSPTDDAPAHIDKMFLQTSSGYRPVEHSYYKRSFLGAAVRGSAGISASGG
GGGCAGGGGGRLDGISAAELGGAGRLFRSSGSHAHGGDRMGGNGSGRGSY
GDTRCLLDADFNRNGITSNIQLACVVQRIWLLISNICHGLLAGLALAHLL
FVLSSHPMDWAKVINGMSLAGETVSSTAQPPAASTPSAIDIDSGDRGTES
GESSSPSAAASGLALISDYAGFAEIYLNTFYCLAIICLVSVFDRMDICRW
SFSNASELISFRWLIITMIYVATIILAICSDSIDEKLYLFNNNANITLTQ
QEMLSNSVQSVWSSLSVTRSIAAISGWIMIGLTPQEDMLYEHLVDLTKYQ
LTNN*

GH12423.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:56:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25214-PA 734 GF25214-PA 10..734 3..704 2594 79.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:56:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13348-PA 708 GG13348-PA 1..708 1..704 3139 94.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:56:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16354-PA 724 GH16354-PA 1..724 1..704 2439 74.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG14186-PA 704 CG14186-PA 1..704 1..704 3608 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:56:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11547-PA 718 GI11547-PA 1..718 1..704 2472 75.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24841-PA 725 GL24841-PA 8..725 3..704 2395 76.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:56:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12814-PA 725 GA12814-PA 8..725 3..704 2409 76.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22254-PA 701 GM22254-PA 1..701 1..704 3609 97.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:56:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12225-PA 453 GD12225-PA 10..449 61..498 2238 98 Plus
Dsim\GD12226-PA 197 GD12226-PA 1..197 508..704 1027 97.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11566-PA 731 GJ11566-PA 1..731 1..704 2466 73.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:56:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17046-PA 752 GK17046-PA 1..752 1..704 2341 71.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22933-PA 707 GE22933-PA 1..707 1..704 3057 93.8 Plus
Dyak\GE22438-PA 522 GE22438-PA 2..522 186..704 2150 92 Plus
Dyak\GE22437-PA 162 GE22437-PA 1..145 1..145 665 95.9 Plus

GH12423.hyp Sequence

Translation from 447 to 2561

> GH12423.hyp
MEAKVHRQHQRHRRTEARQRRLEREAVATGAAAPTPTTPERAEALDCATA
LNEGVVSADPGGSGGTPSSAGRISAQSSADSIELVGSPSQTSQQTVVLVN
GHAPPGQEEGEEESPLGAGNTRDSPPPPKQSDGSRNSSGDAMSLRETLQQ
LPATHHHRSRRTHSPADPDASFHRGILGYMDRELKQSSPTPSAPAGTGNG
TGNGTSTGASRKQQSLSDPQASPAQRSLRSRSSFDKSPRRKRSKSESRRR
RERKLIAAGEMEVRQANETLMRYLKQCSDMHDASLSGELEIDQSLEERRV
HRKTKSQRDKRGQLISKLYSAGGISSILKELADDIAPADGEEIYNPFTPV
VSPTDDAPAHIDKMFLQTSSGYRPVEHSYYKRSFLGAAVRGSAGISASGG
GGGCAGGGGGRLDGISAAELGGAGRLFRSSGSHAHGGDRMGGNGSGRGSY
GDTRCLLDADFNRNGITSNIQLACVVQRIWLLISNICHGLLAGLALAHLL
FVLSSHPMDWAKVINGMSLAGETVSSTAQPPAASTPSAIDIDSGDRGTES
GESSSPSAAASGLALISDYAGFAEIYLNTFYCLAIICLVSVFDRMDICRW
SFSNASELISFRWLIITMIYVATIILAICSDSIDEKLYLFNNNANITLTQ
QEMLSNSVQSVWSSLSVTRSIAAISGWIMIGLTPQEDMLYEHLVDLTKYQ
LTNN*

GH12423.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:31:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG14186-PA 704 CG14186-PA 1..704 1..704 3608 100 Plus