Clone GH12452 Report

Search the DGRC for GH12452

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:124
Well:52
Vector:pOT2
Associated Gene/TranscriptCG34404-RD
Protein status:GH12452.pep: gold
Preliminary Size:2553
Sequenced Size:2504

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6156 2002-12-10 Blastp of sequenced clone
CG34404 2008-04-29 Release 5.5 accounting
CG34404 2008-08-15 Release 5.9 accounting
CG34404 2008-12-18 5.12 accounting

Clone Sequence Records

GH12452.complete Sequence

2504 bp (2504 high quality bases) assembled on 2002-12-10

GenBank Submission: BT003615

> GH12452.complete
CTTCCGCGCAGCTTGAGCTGCCTGTGCTGCAGCGATACGCCATCGGTGCC
CAACGACAAGAGACGCAGTTGGGAGTATACGCTGATGGCTCATCCTCTGG
CCAGACGGCCCATAAACGTTGAGCAACTGTCGGTACAACAGCTAGAAAAC
CGGGTGCGGGATCTAACGCAGCGTCTGCAGCAGGCGGAAAGACAGCTCAC
TGAGAGCAACACAGAGCGGGAAATATGCCACAAGCGCTTGGAGGTTGTCA
GCCAGGCCCACGAGTGTCGCATCACAGAGATGCACTGTGTCATCGCCGAG
TTAAGCAAGAAATTGCGCAGTAAGCAGGACCACGTTATCATGGAGGAGCA
GGAGCCCGACGGCAGCGAACTCAGCTTTCAGGAGGGTTCAGTGTACAATT
CCGAGCTTAACCTCACCAATCCTGATGCCGAATGTCAAACAGAACCACTG
GAAGACTTCGAGGGCGCCTGCAGTACCACCAGCGTGGGTAACGTTGCCCA
CAAACCGCCGGAACTGAGCCATAAGGGACAAGTGGAGGCACTGCAGGAGG
AAGTTCTGCACTTGAGAGCTCGAATCGCCCTCCTCCAGTCCGAGATTTCC
ACCAAGGATGCTGCTGTGGTCGAGGAACAGACCAAAGTCGCCTTCGACTG
CGAATCGGAAGTCAACGAGTGCGGACAGCGACTGAATGATTTGAATGTTT
GCACTTCCTTGACAAGTCCGCAAAAACGCATTCCAGCGGTACCGAAAATG
GCTGAACGGGTTAAGTTGCGGTGCGCCAGCAAACATGAATCCGGAGAAGA
TCCATCCCAAGATACTTCATTGAGCAACGAGCAAATTAATCTGGTCGAAC
ATTTGGTGTCGGAGCTAAAGGAGCAAAATCTATATATGGAGAACTTTATG
GAGCCCCTACATTTGAGCAAAGACTTGGAGCGACTGCAACGACGTGTTGA
ACAATTGGAGATGCGAAACACCATGCTGGCACTGACGCTAGACGAATGCA
AGGAGCACACTGAGCATCTGTATCTGCTATGCGGAAAGTACGAGTCCAAT
GCGGTTGCTCTTCAGTTGGCGCTTAATTGCAGTGATCGCGCCATCGAGGC
CTACGACGTAATGTTGGCTCTGCTCGAAAGCAAGTTGGCACTGCTGGGGG
AGAAATCAGTGGCAGCGGAAGAGAGTCGACGATCGGTGGAGGCGGTGGCC
AGGCACCTGCTAGCCCGTTTGGATAGCGAGAAAAACGTTTGTGAGAACAG
CCTGGGACCGTGGCAACACAACATCAACCTGGGCCCAGAGGATGCCCCAA
AAACTGGCCGCCCGTGGTGTGCCGACGACGACAACCGCCTGCGTTACCAC
GTCTCCAAGCTGAAGGGACGTCGTTCCAATGTCCAGCATACCATTGTCAG
TTTGGAATCACCCTTCAGCGACATATACGAAAGAAAGCGCCTGGCTTTGG
AAAAGGAGCACGAACTTCGGAGCGCGGACAAGAAGTCACCCATTGACTTG
GAGACAGCAGTGATTATGCAAGAAATACTCGAGCTGCGGGATTCGAATTT
GCAGCTGAAGACAAAAATGGAAGAGGCCGAGCAGGAACGGCAGAACGCCA
ACGAACGAGTGGGCATACTCCACGAAGCCCTAAAGCAGCTACAGGCAAAC
AACCGGGTCTCGTATTCGGAGGCGGAGCATGCGGCTCTCACAGAGCAGCA
GTTGGTGGAGGCCTTAACTCGAGAAACGGAGCTCAAGGGTCGCATACAGA
CGCTATTGGCAAATGTAACAGCTTCGCAGAAGGCCTTCGACGAAAAATAC
GAGCAACTGCATCAGAACGTGCGTGAACTGCAGAAATCCAACCACAATCT
GGGCCAAATGTTAGATCACACCAAGCGCAAGTACCAGCTGCGGGTGAGGA
AGCTAGAGCAGAAGATTGTTGACCTGCGGCTGGACTACGAGCAAGGCCAT
AACCATGTTCCTGAGACTACTCTGTAGGAAACGCATGACGACCTTCCAGG
AGGACTGAGCAACTGGGCGTGGAGCGGGCGCGCTTGTCACATATCCCGCA
AAAGATCTTTCCCTCTCGATCATATCGCTTATTTTACCTTTAATGCAATG
ACCACCCGCCCAGCAGTCGCCGTGGATCCGCCATGACCAAGACAGTATCA
CGAATGTGCCATGCGACTTAATTGCAGTCGGCTGGGGCTTGGGCGGTGTC
CCTGCCTCGCAGATAAGGCTGCAGTAACTACATACTCAAATACATACATA
TTCAGAGGTGCCATGAGCAAGGCTCCACCAACCTATCCATAGATCCGTGG
GATTGGAGCATCCGTCTATGGGCCACAAGCAATTACATATACACACATAC
GAATAGACAAACTAAGGAGTTATTCAAGACGCATACACGGGATCCTATAT
TTATACAATGTATTCGCATTTTGCTTGTTATATGATTCAATATGTATTTA
AAACTGTACAAAATATAAAACGTCTACTAAAACTCGAAAAAAAAAAAAAA
AAAA

GH12452.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG34404-RD 2684 CG34404-RD 43..2534 1..2492 12445 99.9 Plus
CG34404.c 3143 CG34404.c 185..2559 118..2492 11860 99.9 Plus
CG34404-RE 2771 CG34404-RE 185..2559 118..2492 11860 99.9 Plus
CG34404.c 3143 CG34404.c 1..119 1..119 595 100 Plus
CG34404-RE 2771 CG34404-RE 1..119 1..119 595 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 11189270..11189980 1844..1134 3555 100 Minus
chr3R 27901430 chr3R 11188570..11189211 2486..1845 3210 100 Minus
chr3R 27901430 chr3R 11190595..11190925 697..367 1655 100 Minus
chr3R 27901430 chr3R 11190040..11190345 1135..830 1530 100 Minus
chr3R 27901430 chr3R 11190982..11191231 367..118 1250 100 Minus
chr3R 27901430 chr3R 11190406..11190540 831..697 675 100 Minus
chr3R 27901430 chr3R 11191297..11191415 119..1 595 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:46:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15364635..15365345 1844..1134 3555 100 Minus
3R 32079331 3R 15363929..15364576 2492..1845 3225 99.8 Minus
3R 32079331 3R 15365960..15366290 697..367 1655 100 Minus
3R 32079331 3R 15365405..15365710 1135..830 1530 100 Minus
3R 32079331 3R 15366347..15366596 367..118 1250 100 Minus
3R 32079331 3R 15365771..15365905 831..697 675 100 Minus
3R 32079331 3R 15366662..15366780 119..1 595 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:07:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 15105466..15106176 1844..1134 3555 100 Minus
3R 31820162 3R 15104760..15105407 2492..1845 3225 99.8 Minus
3R 31820162 3R 15106791..15107121 697..367 1655 100 Minus
3R 31820162 3R 15106236..15106541 1135..830 1530 100 Minus
3R 31820162 3R 15107178..15107427 367..118 1250 100 Minus
3R 31820162 3R 15106602..15106736 831..697 675 100 Minus
3R 31820162 3R 15107493..15107611 119..1 595 100 Minus
Blast to na_te.dros performed on 2019-03-16 17:47:07 has no hits.

GH12452.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:47:59 Download gff for GH12452.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 11188570..11189211 1845..2486 100 <- Minus
chr3R 11189270..11189980 1134..1844 100 <- Minus
chr3R 11190042..11190343 832..1133 100 <- Minus
chr3R 11190406..11190539 698..831 100 <- Minus
chr3R 11190595..11190924 368..697 100 <- Minus
chr3R 11190982..11191231 118..367 100 <- Minus
chr3R 11191299..11191415 1..117 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:37:58 Download gff for GH12452.complete
Subject Subject Range Query Range Percent Splice Strand
CG34404-RD 1..1893 85..1977 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:02:31 Download gff for GH12452.complete
Subject Subject Range Query Range Percent Splice Strand
CG34404-RD 1..1893 85..1977 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:01:33 Download gff for GH12452.complete
Subject Subject Range Query Range Percent Splice Strand
CG34404-RD 1..1893 85..1977 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:52:52 Download gff for GH12452.complete
Subject Subject Range Query Range Percent Splice Strand
CG34404-RD 1..1893 85..1977 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:18:19 Download gff for GH12452.complete
Subject Subject Range Query Range Percent Splice Strand
CG34404-RD 1..1893 85..1977 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:20:42 Download gff for GH12452.complete
Subject Subject Range Query Range Percent Splice Strand
CG34404-RD 1..2486 1..2486 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:02:31 Download gff for GH12452.complete
Subject Subject Range Query Range Percent Splice Strand
CG34404-RD 1..2486 1..2486 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:01:33 Download gff for GH12452.complete
Subject Subject Range Query Range Percent Splice Strand
CG34404-RD 1..2486 1..2486 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:52:52 Download gff for GH12452.complete
Subject Subject Range Query Range Percent Splice Strand
CG34404-RD 1..2486 1..2486 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:18:19 Download gff for GH12452.complete
Subject Subject Range Query Range Percent Splice Strand
CG34404-RD 1..2486 1..2486 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:47:59 Download gff for GH12452.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15363935..15364576 1845..2486 100 <- Minus
3R 15364635..15365345 1134..1844 100 <- Minus
3R 15365407..15365708 832..1133 100 <- Minus
3R 15365771..15365904 698..831 100 <- Minus
3R 15365960..15366289 368..697 100 <- Minus
3R 15366347..15366596 118..367 100 <- Minus
3R 15366664..15366780 1..117 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:47:59 Download gff for GH12452.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15363935..15364576 1845..2486 100 <- Minus
3R 15364635..15365345 1134..1844 100 <- Minus
3R 15365407..15365708 832..1133 100 <- Minus
3R 15365771..15365904 698..831 100 <- Minus
3R 15365960..15366289 368..697 100 <- Minus
3R 15366347..15366596 118..367 100 <- Minus
3R 15366664..15366780 1..117 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:47:59 Download gff for GH12452.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15363935..15364576 1845..2486 100 <- Minus
3R 15364635..15365345 1134..1844 100 <- Minus
3R 15365407..15365708 832..1133 100 <- Minus
3R 15365771..15365904 698..831 100 <- Minus
3R 15365960..15366289 368..697 100 <- Minus
3R 15366347..15366596 118..367 100 <- Minus
3R 15366664..15366780 1..117 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:01:33 Download gff for GH12452.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11189657..11190298 1845..2486 100 <- Minus
arm_3R 11190357..11191067 1134..1844 100 <- Minus
arm_3R 11191129..11191430 832..1133 100 <- Minus
arm_3R 11191493..11191626 698..831 100 <- Minus
arm_3R 11191682..11192011 368..697 100 <- Minus
arm_3R 11192069..11192318 118..367 100 <- Minus
arm_3R 11192386..11192502 1..117 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:24:56 Download gff for GH12452.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15104766..15105407 1845..2486 100 <- Minus
3R 15105466..15106176 1134..1844 100 <- Minus
3R 15106238..15106539 832..1133 100 <- Minus
3R 15106602..15106735 698..831 100 <- Minus
3R 15106791..15107120 368..697 100 <- Minus
3R 15107178..15107427 118..367 100 <- Minus
3R 15107495..15107611 1..117 100   Minus

GH12452.hyp Sequence

Translation from 1 to 1976

> GH12452.hyp
LPRSLSCLCCSDTPSVPNDKRRSWEYTLMAHPLARRPINVEQLSVQQLEN
RVRDLTQRLQQAERQLTESNTEREICHKRLEVVSQAHECRITEMHCVIAE
LSKKLRSKQDHVIMEEQEPDGSELSFQEGSVYNSELNLTNPDAECQTEPL
EDFEGACSTTSVGNVAHKPPELSHKGQVEALQEEVLHLRARIALLQSEIS
TKDAAVVEEQTKVAFDCESEVNECGQRLNDLNVCTSLTSPQKRIPAVPKM
AERVKLRCASKHESGEDPSQDTSLSNEQINLVEHLVSELKEQNLYMENFM
EPLHLSKDLERLQRRVEQLEMRNTMLALTLDECKEHTEHLYLLCGKYESN
AVALQLALNCSDRAIEAYDVMLALLESKLALLGEKSVAAEESRRSVEAVA
RHLLARLDSEKNVCENSLGPWQHNINLGPEDAPKTGRPWCADDDNRLRYH
VSKLKGRRSNVQHTIVSLESPFSDIYERKRLALEKEHELRSADKKSPIDL
ETAVIMQEILELRDSNLQLKTKMEEAEQERQNANERVGILHEALKQLQAN
NRVSYSEAEHAALTEQQLVEALTRETELKGRIQTLLANVTASQKAFDEKY
EQLHQNVRELQKSNHNLGQMLDHTKRKYQLRVRKLEQKIVDLRLDYEQGH
NHVPETTL*

GH12452.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:31:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG34404-PD 630 CG34404-PD 1..630 29..658 3205 100 Plus
CG34404-PC 715 CG34404-PC 97..715 40..658 3146 100 Plus
CG34404-PE 565 CG34404-PE 1..565 94..658 2877 100 Plus
Golgin245-PA 1489 CG3493-PA 333..941 49..629 164 19.4 Plus
Mhc-PL 1936 CG17927-PL 1163..1798 19..648 162 19.2 Plus

GH12452.pep Sequence

Translation from 84 to 1976

> GH12452.pep
MAHPLARRPINVEQLSVQQLENRVRDLTQRLQQAERQLTESNTEREICHK
RLEVVSQAHECRITEMHCVIAELSKKLRSKQDHVIMEEQEPDGSELSFQE
GSVYNSELNLTNPDAECQTEPLEDFEGACSTTSVGNVAHKPPELSHKGQV
EALQEEVLHLRARIALLQSEISTKDAAVVEEQTKVAFDCESEVNECGQRL
NDLNVCTSLTSPQKRIPAVPKMAERVKLRCASKHESGEDPSQDTSLSNEQ
INLVEHLVSELKEQNLYMENFMEPLHLSKDLERLQRRVEQLEMRNTMLAL
TLDECKEHTEHLYLLCGKYESNAVALQLALNCSDRAIEAYDVMLALLESK
LALLGEKSVAAEESRRSVEAVARHLLARLDSEKNVCENSLGPWQHNINLG
PEDAPKTGRPWCADDDNRLRYHVSKLKGRRSNVQHTIVSLESPFSDIYER
KRLALEKEHELRSADKKSPIDLETAVIMQEILELRDSNLQLKTKMEEAEQ
ERQNANERVGILHEALKQLQANNRVSYSEAEHAALTEQQLVEALTRETEL
KGRIQTLLANVTASQKAFDEKYEQLHQNVRELQKSNHNLGQMLDHTKRKY
QLRVRKLEQKIVDLRLDYEQGHNHVPETTL*

GH12452.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:27:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16706-PA 626 GF16706-PA 1..626 1..630 2807 84.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:27:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20596-PA 630 GG20596-PA 1..630 1..630 3281 98.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:27:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18407-PA 683 GH18407-PA 42..683 1..630 2307 73.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG34404-PD 630 CG34404-PD 1..630 1..630 3205 100 Plus
CG34404-PC 715 CG34404-PC 97..715 12..630 3146 100 Plus
CG34404-PE 565 CG34404-PE 1..565 66..630 2877 100 Plus
Golgin245-PA 1489 CG3493-PA 333..941 21..601 164 19.4 Plus
Mhc-PL 1936 CG17927-PL 1199..1798 24..620 161 19.3 Plus
Mhc-PM 1936 CG17927-PM 1199..1798 24..620 161 19.3 Plus
Mhc-PK 1936 CG17927-PK 1199..1798 24..620 161 19.3 Plus
Mhc-PP 1949 CG17927-PP 1199..1798 24..620 161 19.3 Plus
Mhc-PV 1962 CG17927-PV 1199..1798 24..620 161 19.3 Plus
Mhc-PS 1962 CG17927-PS 1199..1798 24..620 161 19.3 Plus
Mhc-PB 1962 CG17927-PB 1199..1798 24..620 161 19.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:27:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24310-PA 636 GI24310-PA 1..636 1..630 2215 70.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:27:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23640-PA 630 GL23640-PA 1..630 1..630 2662 81.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:27:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30112-PB 630 GA30112-PB 1..630 1..630 2663 81.2 Plus
Dpse\GA30112-PA 720 GA30112-PA 102..720 12..630 2605 81 Plus
Dpse\GA30112-PC 565 GA30112-PC 1..565 66..630 2355 79.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:27:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25776-PA 630 GM25776-PA 1..630 1..630 3260 98.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:27:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20354-PA 630 GD20354-PA 1..630 1..630 3276 98.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:27:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10394-PA 690 GJ10394-PA 43..690 1..630 2321 72.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:27:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11441-PA 623 GK11441-PA 1..623 1..630 2217 71.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:27:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26381-PA 630 GE26381-PA 1..630 1..630 3268 98.4 Plus