Clone GH12489 Report

Search the DGRC for GH12489

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:124
Well:89
Vector:pOT2
Associated Gene/TranscriptCG11534-RA
Protein status:GH12489.pep: gold
Preliminary Size:1663
Sequenced Size:1627

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11534 2001-01-01 Release 2 assignment
CG11534 2001-09-19 Blastp of sequenced clone
CG11534 2003-01-01 Sim4 clustering to Release 3
CG11534 2008-04-29 Release 5.5 accounting
CG11534 2008-08-15 Release 5.9 accounting
CG11534 2008-12-18 5.12 accounting

Clone Sequence Records

GH12489.complete Sequence

1627 bp (1627 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058352

> GH12489.complete
CTGGTCGCTAAAAAAACACACAAAGACTTGTTTTGTTGTTCTTCCCCAAA
AATGAGCTCCTGGAAGGACAGTCTCACGAGCATTCCGGGCACGGTGGCGC
AGTTGATTAACGAGAGCGCCAGCAACCTGTTACACGCCTCATCCACGCTG
GGATCAACAGTTGGCCTTGGAGGCTCTGGCTCCACTGGATCTGGATCCGA
GGCCGGAGGCTCCGAGGAAAGTGGTCCACAAGGTGCGGAGTACAGGGCGT
TGCCCATTCCCGCGTCCTTGGTGCGCGAGCAATGGCGCCTAATCTTCACC
AGCGATGCCAATATCCAGGATTTGCAGGCGGCCATCGCCCATTGCAGAGA
TCTCGTCCTGCTGAGCGAGGAACTCAGCGAGGAGCGTCGCTGGTTGGTGC
GGCACCTGGTAGATTTGCGATACTCACTGCAGGAGCTGGAGGAGGCCCAG
GAGCAGCATTCCCTATCGTCGGACATGGTAGTTATGAATGCCATACGTGC
TGTGGTGGGTCATCATTTTGTGCCCCATCACCCGCATCATGGCAAACGGA
ATCGTCTGCAGGCAGCCGCCAAGAGGAACTACTGTGACCACTGCACCACC
ATTATTTGGAGTGTGGTGCAGAACTCGTACGTGTGCAGCGATTGCGGATT
CCTGGTCCATCAGAAGTGCATCGATGGCGTGAAGAGGGTTTGTGCCCATG
TCCTGGTTTCAGAGCGGCAGCATCCCATTTCGGAGATATGTCCAGAAATC
GGACTCGCCTCCCAGGGATACAAGTGCGCCGAGTGCGGGACGATGCTAAA
TATAAAAAATACCTGGATTGAGCCGCGTCTATGCGACTATAGTGGATTGT
ACTACTGCCCTCGCTGCAACTGGAACGACAGTAACTTTATACCAGCCCGC
ATTATCCACAATTGGGACTTTTCGCCACGCAGAGTGTCGCGCACGGCGCT
CCAAGAGATTAGGTTGTTCCTAAATAAACCGCTCATTCGCTTGGAGGAGG
ACAATCCCAAGCTGTTTGTGTTCGTAGAAAAATTGTGTGCGGTAAAGAAA
CTTCGCCAAAATCTGGTGCATATGCGCCACTATCTGGCTGCCTGCAAGAT
TGCCAGCGAGTTGAAGCTGGTGGATCAGCAACTGGGTGTCCGGCGACATC
TGGCCCAGTCAAATGAGTTCTATTCCCTAAGTGATCTCAGCCAGGTGGAA
TCTGGAGCGCTGAGCGAATTTCTGCAAGGAGTTTTCAAGGCATTCAATGA
TCACATACGATCCTGCCCCATGTGCCTTGCCCAAGCGTACATTTGCGAGA
TTTGTAGCAACAACGAGGTGATCTTTCCCTTCGACGATGGCTGCATCAAG
TGTGATCAGTGCAATTCCATCTTCCACCGAGTTTGCCTCACGCGCAAAAA
TATGATTTGCCCCAAATGCATTCGCATCCAAGAGCGGCGTCTTCAATTGG
ATCGCATGAAGAGCACCGAGGACGATGATGATGATGATGATGGAGTGGCC
ACCGATGATGACGTGACTGCCGCAGAATAACTGATCAAATCAGAGTTCAT
TGTGCTGTGTTGGTTTTTAATATGTTATCATATGTACATAAAATGTAACT
ATAAAATGTAAAAAAAAAAAAAAAAAA

GH12489.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:23:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG11534-RA 1736 CG11534-RA 124..1733 1..1610 8050 100 Plus
CG5645-RA 2804 CG5645-RA 2738..2804 1610..1544 335 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:27:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 12123775..12124581 806..1609 3940 99.5 Plus
chr3L 24539361 chr3L 12122916..12123722 1..805 3880 99 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:46:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:27:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12132172..12132976 1..805 4025 100 Plus
3L 28110227 3L 12133029..12133833 806..1610 4025 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:46:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 12126129..12126933 806..1610 4025 100 Plus
3L 28103327 3L 12125272..12126076 1..805 4025 100 Plus
Blast to na_te.dros performed on 2019-03-15 23:27:16 has no hits.

GH12489.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:28:10 Download gff for GH12489.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 12122916..12123722 1..805 99 -> Plus
chr3L 12123775..12124581 806..1609 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:38:03 Download gff for GH12489.complete
Subject Subject Range Query Range Percent Splice Strand
CG11534-RA 1..1479 52..1530 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:08:05 Download gff for GH12489.complete
Subject Subject Range Query Range Percent Splice Strand
CG11534-RA 1..1479 52..1530 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:05:18 Download gff for GH12489.complete
Subject Subject Range Query Range Percent Splice Strand
CG11534-RA 1..1479 52..1530 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:38:49 Download gff for GH12489.complete
Subject Subject Range Query Range Percent Splice Strand
CG11534-RA 1..1479 52..1530 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:35:08 Download gff for GH12489.complete
Subject Subject Range Query Range Percent Splice Strand
CG11534-RA 1..1479 52..1530 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:58:20 Download gff for GH12489.complete
Subject Subject Range Query Range Percent Splice Strand
CG11534-RA 1..1609 1..1609 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:08:05 Download gff for GH12489.complete
Subject Subject Range Query Range Percent Splice Strand
CG11534-RA 1..1609 1..1609 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:05:18 Download gff for GH12489.complete
Subject Subject Range Query Range Percent Splice Strand
CG11534-RA 27..1635 1..1609 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:38:49 Download gff for GH12489.complete
Subject Subject Range Query Range Percent Splice Strand
CG11534-RA 1..1609 1..1609 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:35:08 Download gff for GH12489.complete
Subject Subject Range Query Range Percent Splice Strand
CG11534-RA 27..1635 1..1609 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:28:10 Download gff for GH12489.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12132172..12132976 1..805 100 -> Plus
3L 12133029..12133832 806..1609 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:28:10 Download gff for GH12489.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12132172..12132976 1..805 100 -> Plus
3L 12133029..12133832 806..1609 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:28:10 Download gff for GH12489.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12132172..12132976 1..805 100 -> Plus
3L 12133029..12133832 806..1609 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:05:18 Download gff for GH12489.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12125272..12126076 1..805 100 -> Plus
arm_3L 12126129..12126932 806..1609 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:16:16 Download gff for GH12489.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12125272..12126076 1..805 100 -> Plus
3L 12126129..12126932 806..1609 100   Plus

GH12489.hyp Sequence

Translation from 1 to 1529

> GH12489.hyp
LVAKKTHKDLFCCSSPKMSSWKDSLTSIPGTVAQLINESASNLLHASSTL
GSTVGLGGSGSTGSGSEAGGSEESGPQGAEYRALPIPASLVREQWRLIFT
SDANIQDLQAAIAHCRDLVLLSEELSEERRWLVRHLVDLRYSLQELEEAQ
EQHSLSSDMVVMNAIRAVVGHHFVPHHPHHGKRNRLQAAAKRNYCDHCTT
IIWSVVQNSYVCSDCGFLVHQKCIDGVKRVCAHVLVSERQHPISEICPEI
GLASQGYKCAECGTMLNIKNTWIEPRLCDYSGLYYCPRCNWNDSNFIPAR
IIHNWDFSPRRVSRTALQEIRLFLNKPLIRLEEDNPKLFVFVEKLCAVKK
LRQNLVHMRHYLAACKIASELKLVDQQLGVRRHLAQSNEFYSLSDLSQVE
SGALSEFLQGVFKAFNDHIRSCPMCLAQAYICEICSNNEVIFPFDDGCIK
CDQCNSIFHRVCLTRKNMICPKCIRIQERRLQLDRMKSTEDDDDDDDGVA
TDDDVTAAE*

GH12489.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG11534-PA 492 CG11534-PA 1..492 18..509 2621 100 Plus
CG6613-PA 720 CG6613-PA 460..704 238..482 382 33.7 Plus
CG12772-PB 827 CG12772-PB 596..825 252..479 305 29.1 Plus
CG12772-PA 827 CG12772-PA 596..825 252..479 305 29.1 Plus

GH12489.pep Sequence

Translation from 51 to 1529

> GH12489.pep
MSSWKDSLTSIPGTVAQLINESASNLLHASSTLGSTVGLGGSGSTGSGSE
AGGSEESGPQGAEYRALPIPASLVREQWRLIFTSDANIQDLQAAIAHCRD
LVLLSEELSEERRWLVRHLVDLRYSLQELEEAQEQHSLSSDMVVMNAIRA
VVGHHFVPHHPHHGKRNRLQAAAKRNYCDHCTTIIWSVVQNSYVCSDCGF
LVHQKCIDGVKRVCAHVLVSERQHPISEICPEIGLASQGYKCAECGTMLN
IKNTWIEPRLCDYSGLYYCPRCNWNDSNFIPARIIHNWDFSPRRVSRTAL
QEIRLFLNKPLIRLEEDNPKLFVFVEKLCAVKKLRQNLVHMRHYLAACKI
ASELKLVDQQLGVRRHLAQSNEFYSLSDLSQVESGALSEFLQGVFKAFND
HIRSCPMCLAQAYICEICSNNEVIFPFDDGCIKCDQCNSIFHRVCLTRKN
MICPKCIRIQERRLQLDRMKSTEDDDDDDDGVATDDDVTAAE*

GH12489.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:02:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24801-PA 477 GF24801-PA 1..461 1..471 2106 86.2 Plus
Dana\GF13287-PA 727 GF13287-PA 457..709 213..465 368 31.9 Plus
Dana\GF22302-PA 829 GF22302-PA 599..827 235..462 275 27.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:02:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15560-PA 488 GG15560-PA 1..488 1..492 2552 97 Plus
Dere\GG22160-PA 720 GG22160-PA 460..701 221..462 376 34.1 Plus
Dere\GG18265-PA 822 GG18265-PA 591..820 235..462 286 28.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:02:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16150-PA 471 GH16150-PA 1..471 1..489 1906 74.3 Plus
Dgri\GH20549-PA 723 GH20549-PA 455..704 213..462 366 32.3 Plus
Dgri\GH11907-PA 916 GH11907-PA 686..912 235..463 265 29 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG11534-PA 492 CG11534-PA 1..492 1..492 2621 100 Plus
CG6613-PA 720 CG6613-PA 460..704 221..465 382 33.7 Plus
CG12772-PB 827 CG12772-PB 596..825 235..462 305 29.1 Plus
CG12772-PA 827 CG12772-PA 596..825 235..462 305 29.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:02:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12422-PA 477 GI12422-PA 1..468 1..486 1949 74.1 Plus
Dmoj\GI18818-PA 710 GI18818-PA 455..701 219..468 365 33.5 Plus
Dmoj\GI21481-PA 907 GI21481-PA 676..904 235..465 300 29.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:02:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25154-PA 477 GL25154-PA 1..464 1..474 2085 82.3 Plus
Dper\GL11774-PA 579 GL11774-PA 317..563 219..465 366 33.5 Plus
Dper\GL12951-PA 847 GL12951-PA 620..845 235..462 298 27.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23700-PA 477 GA23700-PA 1..464 1..474 2076 82.1 Plus
Dpse\GA19724-PA 719 GA19724-PA 457..703 219..465 367 33.5 Plus
Dpse\GA11804-PA 846 GA11804-PA 619..844 235..462 301 27.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25328-PA 490 GM25328-PA 1..490 1..492 2596 98.4 Plus
Dsec\GM15880-PA 720 GM15880-PA 460..704 221..465 379 33.7 Plus
Dsec\GM21745-PA 821 GM21745-PA 590..819 235..462 286 28.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:02:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14359-PA 490 GD14359-PA 1..490 1..492 2590 98.4 Plus
Dsim\GD11643-PA 720 GD11643-PA 460..704 221..465 379 33.7 Plus
Dsim\GD16910-PA 825 GD16910-PA 594..823 235..462 285 28.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:02:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12317-PA 479 GJ12317-PA 1..463 1..479 1965 76 Plus
Dvir\GJ21845-PA 714 GJ21845-PA 452..698 219..465 365 32.7 Plus
Dvir\GJ18512-PA 884 GJ18512-PA 654..880 235..463 309 29.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:02:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17546-PA 486 GK17546-PA 1..480 1..491 1901 73.9 Plus
Dwil\GK21393-PA 726 GK21393-PA 464..710 219..465 346 32.7 Plus
Dwil\GK16461-PA 799 GK16461-PA 562..793 235..464 249 25.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:02:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21885-PA 491 GE21885-PA 1..491 1..492 2567 97.2 Plus
Dyak\GE12240-PA 720 GE12240-PA 460..701 221..462 371 33.7 Plus
Dyak\GE15796-PA 830 GE15796-PA 599..828 235..462 290 28.6 Plus