Clone GH12537 Report

Search the DGRC for GH12537

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:125
Well:37
Vector:pOT2
Associated Gene/TranscriptTrh-RA
Protein status:GH12537.pep: gold
Preliminary Size:2108
Sequenced Size:2177

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9122 2001-01-01 Release 2 assignment
CG9122 2002-07-13 Blastp of sequenced clone
CG9122 2003-01-01 Sim4 clustering to Release 3
Trh 2008-04-29 Release 5.5 accounting
Trh 2008-08-15 Release 5.9 accounting
Trh 2008-12-18 5.12 accounting

Clone Sequence Records

GH12537.complete Sequence

2177 bp (2177 high quality bases) assembled on 2002-07-13

GenBank Submission: BT001418

> GH12537.complete
CATACGACGCGTGTGCCCGCGGAAATCGAAAACGAGTAGCTACCAAGTGC
AGTGCAGTGATGAGTGCTTCCGGGAAGAGTCTTCTGGGCCTGTGGCTCTA
CAGGAGTGGCGAACAGGAGTGGGCCGTCAAGCAGGGAAGTCCCTTGCACC
AGCTTAAAAAGGATTCCACCACATCCGGCTCCAGCTCGCATCCAAGTCTC
GGCAGAAACGCCTCCGCTCCGCCGGAGCCGCCAAGGCTGGCCATCGGTGG
TGGTGGTCAGGATAATGGAAGACAGCATTCCCCTGGCGAACGCATCTCCA
TCATTTTCACCCTGCGTAACCAGGTGGGAAACCTGGCCAGAGCCCTCCAG
GTTTTCCAGGAGCTGGGCATCAATGTGCTGCATTTGGAGCTATCGCCGCT
TGAGATGGCCACCAACCAGGCGGATGTCCTCGTGGATGTGGAGTGCGATC
AGCGTCGACTCGACCAGGTGGTCAAGATGCTCAACCGAGAGGTGGCCTCT
GTGAACTACACTTCCGTGAACACGCAGGGATTGGCCAGGGCTCCGTCGCT
ATCGGCGTGCTCCAGTTTTGACTTCGGCGATATGGTGTGGTTTCCGCGAA
AGATTTCCGATTTGGACAAGGCGCAGAATGTGCTCATGTACGGCTCGGAG
TTGGATGCCGACCATCCAGGATTCAAGGACCCCGTGTACCGTAAACGGCG
AGAGCAGTTCTCGGCCATTGCCAACAACTTCAAGCATGGCAACCCCATTC
CACGTGTGCAATACACACCTGAGGAGGTGAAAACCTGGGGCACCGTTTTC
TTGGAGCTCCACCGCCTCTACGTGTTGCATGCTGTGCCTGAGTACATGGA
CAACTGGCCGGAGCTGGAGAAGTACTGTGGCTACCGCGAGGACAACGTTC
CCCAGTTGCAGGATGTGAGTGTCTATCTCAAGCGCAAGACGGGATTCCAG
CTCAGGCCTGTGGCGGGTTACCTCTCCCCAAGGGACTTCCTTTCGGGACT
CGCCTTCCGCGTGTTCCACTGCACCCAGTACATTCGACACTCCTCGGATC
CATTCTACACACCAGAACCGGACTGTTGCCACGAGCTACTGGGCCACATG
CCCCTGCTGGCCAACTCCAGTTTTGCCCAGTTTTCACAGGAGATTGGCCT
TGCATCTTTGGGTGCAAGCGACGCGGATATCGAGAAGTTGGCTACGCTCT
ACTTCTTTACTGTGGAATTTGGGCTGTGCAAACAGGCGGACAGCACATTT
AAGGTGTATGGAGCCGGACTTCTGAGCTCAGTGGCCGAGTTGCAGCATGC
CATTACGGCGGAGAATAAGATAAAGAAGTTCGACCCGGAGGTGACGTGCC
AGCAGGAGTGCATCATCACCTCCTACCAGAATGCCTACTACTACACCGAT
TCCTTCGAGGAGGCCAAGGAGCAAATGAGAGCTTTTGCCGAGAGCATCCA
ACGGCCATTTGGAGTGCGCTACAACCCGTACACGATGAGTGTTGAAGTCC
TGTCGAATGCCAAGAAGATCACAGCGGTGGTCAGCGAACTCAGAGGCGAT
CTCAGCATTGTCTGCTCGGCACTGCGAAAGATCTCCGCCACGGACGAGAA
TCTGGATGTGGATAGCATCGCTAACATGCTCCACAACAGCCTGAATGTGA
GAGGTGGAGCTTCTGGCGGAGGCGGAAGTCCGTGCAGTCCGGACAACTCG
GATAACTCTACGGCGGAGGGAGATTAGGAATGGAAATGGACAGCAATGAA
ACCTTAAGGGAACAGATTCTCGGGACCACAGAGCAGTATAATTCACTTGG
CAAATGAAAATATTTTCGTGTAAACAGATGTTATACAGATATATACAAAA
TATATTAACAAGCTCAAGATATTAGGCAAATCTTTTTATGAAATCTCAAC
CAAATATACTCAACAGAGAATATTCAAGTTAAAAATCAAATTGTAGGGAA
CTAGACAAATTATATTACCCGCGAAGTCTCCGATATCTTAAGAACTTATC
GTATTTCCGAAAGGAAGCCAAGTGAATTGTACTACGCATACACCTTTTAA
ATATGCACACGTATCTTTATCTATGTCTAGCAGTTGTTTATTCAAATCTT
AAAGCTATGTAAAAACTAAAGTAACAATAAATTGCAACCTCTCGGTGCGC
TGTCCTACTAAAAAAAAAAAAAAAAAA

GH12537.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:41:48
Subject Length Description Subject Range Query Range Score Percent Strand
Trh-RA 2331 Trh-RA 173..2331 1..2159 10795 100 Plus
CG13912-RA 1085 CG13912-RA 965..1085 2160..2040 605 100 Minus
ple-RA 3609 ple-RA 1479..1630 1080..1231 265 78.2 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1189931..1190665 2159..1428 3380 98 Minus
chr3L 24539361 chr3L 1192115..1192684 570..1 2820 99.6 Minus
chr3L 24539361 chr3L 1191374..1191657 1070..787 1375 98.9 Minus
chr3L 24539361 chr3L 1190723..1190956 1429..1196 1155 99.6 Minus
chr3L 24539361 chr3L 1191843..1192013 736..566 840 99.4 Minus
chr3L 24539361 chr3L 1191015..1191141 1196..1070 635 100 Minus
chr3L 24539361 chr3L 1191718..1191769 788..737 260 100 Minus
chr3L 24539361 chr3L 6708082..6708189 1187..1080 225 80.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:46:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:38:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1190383..1191115 2160..1428 3665 100 Minus
3L 28110227 3L 1192580..1193149 570..1 2850 100 Minus
3L 28110227 3L 1191824..1192107 1070..787 1420 100 Minus
3L 28110227 3L 1191173..1191406 1429..1196 1170 100 Minus
3L 28110227 3L 1192308..1192478 736..566 840 99.4 Minus
3L 28110227 3L 1191465..1191591 1196..1070 635 100 Minus
3L 28110227 3L 1192183..1192234 788..737 260 100 Minus
3L 28110227 3L 6715717..6715824 1187..1080 240 81.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:15:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1190383..1191115 2160..1428 3665 100 Minus
3L 28103327 3L 1192580..1193149 570..1 2850 100 Minus
3L 28103327 3L 1191824..1192107 1070..787 1420 100 Minus
3L 28103327 3L 1191173..1191406 1429..1196 1170 100 Minus
3L 28103327 3L 1192308..1192478 736..566 840 99.4 Minus
3L 28103327 3L 1191465..1191591 1196..1070 635 100 Minus
3L 28103327 3L 1192183..1192234 788..737 260 100 Minus
3L 28103327 3L 6708817..6708924 1187..1080 240 81.4 Minus
Blast to na_te.dros performed on 2019-03-15 15:38:01 has no hits.

GH12537.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:39:07 Download gff for GH12537.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1189931..1190663 1430..2159 97 <- Minus
chr3L 1190723..1190955 1197..1429 99 <- Minus
chr3L 1191015..1191141 1070..1196 100 <- Minus
chr3L 1191375..1191656 788..1069 98 <- Minus
chr3L 1191719..1191769 737..787 100 <- Minus
chr3L 1191843..1192008 571..736 100 <- Minus
chr3L 1192115..1192684 1..570 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:38:07 Download gff for GH12537.complete
Subject Subject Range Query Range Percent Splice Strand
Trh-RA 1..1668 60..1727 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:14:36 Download gff for GH12537.complete
Subject Subject Range Query Range Percent Splice Strand
Trh-RA 1..1668 60..1727 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:34:00 Download gff for GH12537.complete
Subject Subject Range Query Range Percent Splice Strand
Trh-RA 1..1668 60..1727 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:05:35 Download gff for GH12537.complete
Subject Subject Range Query Range Percent Splice Strand
Trh-RA 1..1668 60..1727 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:10:58 Download gff for GH12537.complete
Subject Subject Range Query Range Percent Splice Strand
Trh-RA 1..1668 60..1727 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:37:47 Download gff for GH12537.complete
Subject Subject Range Query Range Percent Splice Strand
Trh-RA 21..2179 1..2159 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:14:36 Download gff for GH12537.complete
Subject Subject Range Query Range Percent Splice Strand
Trh-RA 21..2179 1..2159 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:34:00 Download gff for GH12537.complete
Subject Subject Range Query Range Percent Splice Strand
Trh-RA 25..2183 1..2159 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:05:35 Download gff for GH12537.complete
Subject Subject Range Query Range Percent Splice Strand
Trh-RA 21..2179 1..2159 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:10:58 Download gff for GH12537.complete
Subject Subject Range Query Range Percent Splice Strand
Trh-RA 25..2183 1..2159 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:39:07 Download gff for GH12537.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1190384..1191113 1430..2159 100 <- Minus
3L 1191173..1191405 1197..1429 100 <- Minus
3L 1191465..1191591 1070..1196 100 <- Minus
3L 1191825..1192106 788..1069 100 <- Minus
3L 1192184..1192234 737..787 100 <- Minus
3L 1192308..1192473 571..736 100 <- Minus
3L 1192580..1193149 1..570 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:39:07 Download gff for GH12537.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1190384..1191113 1430..2159 100 <- Minus
3L 1191173..1191405 1197..1429 100 <- Minus
3L 1191465..1191591 1070..1196 100 <- Minus
3L 1191825..1192106 788..1069 100 <- Minus
3L 1192184..1192234 737..787 100 <- Minus
3L 1192308..1192473 571..736 100 <- Minus
3L 1192580..1193149 1..570 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:39:07 Download gff for GH12537.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1190384..1191113 1430..2159 100 <- Minus
3L 1191173..1191405 1197..1429 100 <- Minus
3L 1191465..1191591 1070..1196 100 <- Minus
3L 1191825..1192106 788..1069 100 <- Minus
3L 1192184..1192234 737..787 100 <- Minus
3L 1192308..1192473 571..736 100 <- Minus
3L 1192580..1193149 1..570 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:34:00 Download gff for GH12537.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1191825..1192106 788..1069 100 <- Minus
arm_3L 1192184..1192234 737..787 100 <- Minus
arm_3L 1192308..1192473 571..736 100 <- Minus
arm_3L 1190384..1191113 1430..2159 100 <- Minus
arm_3L 1191173..1191405 1197..1429 100 <- Minus
arm_3L 1191465..1191591 1070..1196 100 <- Minus
arm_3L 1192580..1193149 1..570 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:37:27 Download gff for GH12537.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1190384..1191113 1430..2159 100 <- Minus
3L 1191173..1191405 1197..1429 100 <- Minus
3L 1191465..1191591 1070..1196 100 <- Minus
3L 1191825..1192106 788..1069 100 <- Minus
3L 1192184..1192234 737..787 100 <- Minus
3L 1192308..1192473 571..736 100 <- Minus
3L 1192580..1193149 1..570 100   Minus

GH12537.hyp Sequence

Translation from 2 to 1726

> GH12537.hyp
YDACARGNRKRVATKCSAVMSASGKSLLGLWLYRSGEQEWAVKQGSPLHQ
LKKDSTTSGSSSHPSLGRNASAPPEPPRLAIGGGGQDNGRQHSPGERISI
IFTLRNQVGNLARALQVFQELGINVLHLELSPLEMATNQADVLVDVECDQ
RRLDQVVKMLNREVASVNYTSVNTQGLARAPSLSACSSFDFGDMVWFPRK
ISDLDKAQNVLMYGSELDADHPGFKDPVYRKRREQFSAIANNFKHGNPIP
RVQYTPEEVKTWGTVFLELHRLYVLHAVPEYMDNWPELEKYCGYREDNVP
QLQDVSVYLKRKTGFQLRPVAGYLSPRDFLSGLAFRVFHCTQYIRHSSDP
FYTPEPDCCHELLGHMPLLANSSFAQFSQEIGLASLGASDADIEKLATLY
FFTVEFGLCKQADSTFKVYGAGLLSSVAELQHAITAENKIKKFDPEVTCQ
QECIITSYQNAYYYTDSFEEAKEQMRAFAESIQRPFGVRYNPYTMSVEVL
SNAKKITAVVSELRGDLSIVCSALRKISATDENLDVDSIANMLHNSLNVR
GGASGGGGSPCSPDNSDNSTAEGD*

GH12537.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:32:49
Subject Length Description Subject Range Query Range Score Percent Strand
Trh-PA 555 CG9122-PA 1..555 20..574 2905 100 Plus
Hn-PB 447 CG7399-PB 41..445 109..527 1047 50.5 Plus
Hn-PC 452 CG7399-PC 46..450 109..527 1047 50.5 Plus
Hn-PA 452 CG7399-PA 46..450 109..527 1047 50.5 Plus
ple-PA 508 CG10118-PA 89..504 99..527 869 42.1 Plus

GH12537.pep Sequence

Translation from 59 to 1726

> GH12537.pep
MSASGKSLLGLWLYRSGEQEWAVKQGSPLHQLKKDSTTSGSSSHPSLGRN
ASAPPEPPRLAIGGGGQDNGRQHSPGERISIIFTLRNQVGNLARALQVFQ
ELGINVLHLELSPLEMATNQADVLVDVECDQRRLDQVVKMLNREVASVNY
TSVNTQGLARAPSLSACSSFDFGDMVWFPRKISDLDKAQNVLMYGSELDA
DHPGFKDPVYRKRREQFSAIANNFKHGNPIPRVQYTPEEVKTWGTVFLEL
HRLYVLHAVPEYMDNWPELEKYCGYREDNVPQLQDVSVYLKRKTGFQLRP
VAGYLSPRDFLSGLAFRVFHCTQYIRHSSDPFYTPEPDCCHELLGHMPLL
ANSSFAQFSQEIGLASLGASDADIEKLATLYFFTVEFGLCKQADSTFKVY
GAGLLSSVAELQHAITAENKIKKFDPEVTCQQECIITSYQNAYYYTDSFE
EAKEQMRAFAESIQRPFGVRYNPYTMSVEVLSNAKKITAVVSELRGDLSI
VCSALRKISATDENLDVDSIANMLHNSLNVRGGASGGGGSPCSPDNSDNS
TAEGD*

GH12537.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10077-PA 558 GF10077-PA 1..558 1..555 2771 94.3 Plus
Dana\GF10325-PA 452 GF10325-PA 46..450 90..508 1060 51.1 Plus
Dana\GF10892-PA 581 GF10892-PA 99..577 14..508 893 37.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:57:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14621-PA 559 GG14621-PA 1..559 1..555 2916 97 Plus
Dere\GG14450-PA 452 GG14450-PA 46..450 90..508 1074 50.5 Plus
Dere\GG15029-PA 581 GG15029-PA 162..577 80..508 898 42.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:57:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15664-PA 578 GH15664-PA 1..578 1..555 2546 84.7 Plus
Dgri\GH14976-PA 452 GH14976-PA 46..450 90..508 1049 49.6 Plus
Dgri\GH15635-PA 574 GH15635-PA 135..570 60..508 907 40.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:44:17
Subject Length Description Subject Range Query Range Score Percent Strand
Trh-PA 555 CG9122-PA 1..555 1..555 2905 100 Plus
Hn-PB 447 CG7399-PB 41..445 90..508 1047 50.5 Plus
Hn-PC 452 CG7399-PC 46..450 90..508 1047 50.5 Plus
Hn-PA 452 CG7399-PA 46..450 90..508 1047 50.5 Plus
ple-PA 508 CG10118-PA 89..504 80..508 869 42.1 Plus
ple-PC 579 CG10118-PC 160..575 80..508 869 42.1 Plus
ple-PB 579 CG10118-PB 160..575 80..508 869 42.1 Plus
Hn-PD 178 CG7399-PD 2..176 333..508 492 54.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:57:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12709-PA 565 GI12709-PA 1..565 1..555 2570 85.9 Plus
Dmoj\GI13137-PA 452 GI13137-PA 46..450 90..508 1061 50.8 Plus
Dmoj\GI12682-PA 576 GI12682-PA 157..572 80..508 904 42.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:57:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24728-PA 542 GL24728-PA 1..535 1..516 2521 88.8 Plus
Dper\GL25460-PA 465 GL25460-PA 156..463 244..553 1545 92.9 Plus
Dper\GL18039-PA 452 GL18039-PA 46..450 90..508 1053 50.4 Plus
Dper\GL13238-PA 575 GL13238-PA 156..571 80..508 892 42.1 Plus
Dper\GL25460-PA 465 GL25460-PA 1..131 1..113 451 72.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:57:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21560-PA 572 GA21560-PA 1..570 1..553 2655 88 Plus
Dpse\GA20325-PA 452 GA20325-PA 46..450 90..508 1053 50.4 Plus
Dpse\GA10085-PA 575 GA10085-PA 102..571 27..508 893 38.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:57:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14234-PA 555 GM14234-PA 1..555 1..555 2972 99.1 Plus
Dsec\GM25002-PA 452 GM25002-PA 46..450 90..508 1074 50.7 Plus
Dsec\GM13828-PA 226 GM13828-PA 1..222 286..508 629 53.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:57:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13494-PA 555 GD13494-PA 1..555 1..555 2977 99.1 Plus
Dsim\GD14035-PA 452 GD14035-PA 46..450 90..508 1074 50.7 Plus
Dsim\GD13115-PA 579 GD13115-PA 160..575 80..508 899 42.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:57:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12694-PA 540 GJ12694-PA 1..540 1..555 2374 80.1 Plus
Dvir\GJ13886-PA 452 GJ13886-PA 46..450 90..508 1060 50.6 Plus
Dvir\GJ12666-PA 576 GJ12666-PA 157..572 80..508 907 42.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:57:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16857-PA 580 GK16857-PA 1..580 1..555 2589 86 Plus
Dwil\GK21215-PA 452 GK21215-PA 46..450 90..508 1065 50.8 Plus
Dwil\GK12579-PA 576 GK12579-PA 157..572 80..508 897 42.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:57:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20982-PA 558 GE20982-PA 1..558 1..555 2948 98 Plus
Dyak\Hn-PA 452 GE21640-PA 46..450 90..508 1071 50.5 Plus
Dyak\GE20472-PA 577 GE20472-PA 158..573 80..508 898 42.1 Plus