BDGP Sequence Production Resources |
Search the DGRC for GH12537
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 125 |
Well: | 37 |
Vector: | pOT2 |
Associated Gene/Transcript | Trh-RA |
Protein status: | GH12537.pep: gold |
Preliminary Size: | 2108 |
Sequenced Size: | 2177 |
Gene | Date | Evidence |
---|---|---|
CG9122 | 2001-01-01 | Release 2 assignment |
CG9122 | 2002-07-13 | Blastp of sequenced clone |
CG9122 | 2003-01-01 | Sim4 clustering to Release 3 |
Trh | 2008-04-29 | Release 5.5 accounting |
Trh | 2008-08-15 | Release 5.9 accounting |
Trh | 2008-12-18 | 5.12 accounting |
2177 bp (2177 high quality bases) assembled on 2002-07-13
GenBank Submission: BT001418
> GH12537.complete CATACGACGCGTGTGCCCGCGGAAATCGAAAACGAGTAGCTACCAAGTGC AGTGCAGTGATGAGTGCTTCCGGGAAGAGTCTTCTGGGCCTGTGGCTCTA CAGGAGTGGCGAACAGGAGTGGGCCGTCAAGCAGGGAAGTCCCTTGCACC AGCTTAAAAAGGATTCCACCACATCCGGCTCCAGCTCGCATCCAAGTCTC GGCAGAAACGCCTCCGCTCCGCCGGAGCCGCCAAGGCTGGCCATCGGTGG TGGTGGTCAGGATAATGGAAGACAGCATTCCCCTGGCGAACGCATCTCCA TCATTTTCACCCTGCGTAACCAGGTGGGAAACCTGGCCAGAGCCCTCCAG GTTTTCCAGGAGCTGGGCATCAATGTGCTGCATTTGGAGCTATCGCCGCT TGAGATGGCCACCAACCAGGCGGATGTCCTCGTGGATGTGGAGTGCGATC AGCGTCGACTCGACCAGGTGGTCAAGATGCTCAACCGAGAGGTGGCCTCT GTGAACTACACTTCCGTGAACACGCAGGGATTGGCCAGGGCTCCGTCGCT ATCGGCGTGCTCCAGTTTTGACTTCGGCGATATGGTGTGGTTTCCGCGAA AGATTTCCGATTTGGACAAGGCGCAGAATGTGCTCATGTACGGCTCGGAG TTGGATGCCGACCATCCAGGATTCAAGGACCCCGTGTACCGTAAACGGCG AGAGCAGTTCTCGGCCATTGCCAACAACTTCAAGCATGGCAACCCCATTC CACGTGTGCAATACACACCTGAGGAGGTGAAAACCTGGGGCACCGTTTTC TTGGAGCTCCACCGCCTCTACGTGTTGCATGCTGTGCCTGAGTACATGGA CAACTGGCCGGAGCTGGAGAAGTACTGTGGCTACCGCGAGGACAACGTTC CCCAGTTGCAGGATGTGAGTGTCTATCTCAAGCGCAAGACGGGATTCCAG CTCAGGCCTGTGGCGGGTTACCTCTCCCCAAGGGACTTCCTTTCGGGACT CGCCTTCCGCGTGTTCCACTGCACCCAGTACATTCGACACTCCTCGGATC CATTCTACACACCAGAACCGGACTGTTGCCACGAGCTACTGGGCCACATG CCCCTGCTGGCCAACTCCAGTTTTGCCCAGTTTTCACAGGAGATTGGCCT TGCATCTTTGGGTGCAAGCGACGCGGATATCGAGAAGTTGGCTACGCTCT ACTTCTTTACTGTGGAATTTGGGCTGTGCAAACAGGCGGACAGCACATTT AAGGTGTATGGAGCCGGACTTCTGAGCTCAGTGGCCGAGTTGCAGCATGC CATTACGGCGGAGAATAAGATAAAGAAGTTCGACCCGGAGGTGACGTGCC AGCAGGAGTGCATCATCACCTCCTACCAGAATGCCTACTACTACACCGAT TCCTTCGAGGAGGCCAAGGAGCAAATGAGAGCTTTTGCCGAGAGCATCCA ACGGCCATTTGGAGTGCGCTACAACCCGTACACGATGAGTGTTGAAGTCC TGTCGAATGCCAAGAAGATCACAGCGGTGGTCAGCGAACTCAGAGGCGAT CTCAGCATTGTCTGCTCGGCACTGCGAAAGATCTCCGCCACGGACGAGAA TCTGGATGTGGATAGCATCGCTAACATGCTCCACAACAGCCTGAATGTGA GAGGTGGAGCTTCTGGCGGAGGCGGAAGTCCGTGCAGTCCGGACAACTCG GATAACTCTACGGCGGAGGGAGATTAGGAATGGAAATGGACAGCAATGAA ACCTTAAGGGAACAGATTCTCGGGACCACAGAGCAGTATAATTCACTTGG CAAATGAAAATATTTTCGTGTAAACAGATGTTATACAGATATATACAAAA TATATTAACAAGCTCAAGATATTAGGCAAATCTTTTTATGAAATCTCAAC CAAATATACTCAACAGAGAATATTCAAGTTAAAAATCAAATTGTAGGGAA CTAGACAAATTATATTACCCGCGAAGTCTCCGATATCTTAAGAACTTATC GTATTTCCGAAAGGAAGCCAAGTGAATTGTACTACGCATACACCTTTTAA ATATGCACACGTATCTTTATCTATGTCTAGCAGTTGTTTATTCAAATCTT AAAGCTATGTAAAAACTAAAGTAACAATAAATTGCAACCTCTCGGTGCGC TGTCCTACTAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 1189931..1190665 | 2159..1428 | 3380 | 98 | Minus |
chr3L | 24539361 | chr3L | 1192115..1192684 | 570..1 | 2820 | 99.6 | Minus |
chr3L | 24539361 | chr3L | 1191374..1191657 | 1070..787 | 1375 | 98.9 | Minus |
chr3L | 24539361 | chr3L | 1190723..1190956 | 1429..1196 | 1155 | 99.6 | Minus |
chr3L | 24539361 | chr3L | 1191843..1192013 | 736..566 | 840 | 99.4 | Minus |
chr3L | 24539361 | chr3L | 1191015..1191141 | 1196..1070 | 635 | 100 | Minus |
chr3L | 24539361 | chr3L | 1191718..1191769 | 788..737 | 260 | 100 | Minus |
chr3L | 24539361 | chr3L | 6708082..6708189 | 1187..1080 | 225 | 80.6 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 1190383..1191115 | 2160..1428 | 3665 | 100 | Minus |
3L | 28110227 | 3L | 1192580..1193149 | 570..1 | 2850 | 100 | Minus |
3L | 28110227 | 3L | 1191824..1192107 | 1070..787 | 1420 | 100 | Minus |
3L | 28110227 | 3L | 1191173..1191406 | 1429..1196 | 1170 | 100 | Minus |
3L | 28110227 | 3L | 1192308..1192478 | 736..566 | 840 | 99.4 | Minus |
3L | 28110227 | 3L | 1191465..1191591 | 1196..1070 | 635 | 100 | Minus |
3L | 28110227 | 3L | 1192183..1192234 | 788..737 | 260 | 100 | Minus |
3L | 28110227 | 3L | 6715717..6715824 | 1187..1080 | 240 | 81.5 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 1190383..1191115 | 2160..1428 | 3665 | 100 | Minus |
3L | 28103327 | 3L | 1192580..1193149 | 570..1 | 2850 | 100 | Minus |
3L | 28103327 | 3L | 1191824..1192107 | 1070..787 | 1420 | 100 | Minus |
3L | 28103327 | 3L | 1191173..1191406 | 1429..1196 | 1170 | 100 | Minus |
3L | 28103327 | 3L | 1192308..1192478 | 736..566 | 840 | 99.4 | Minus |
3L | 28103327 | 3L | 1191465..1191591 | 1196..1070 | 635 | 100 | Minus |
3L | 28103327 | 3L | 1192183..1192234 | 788..737 | 260 | 100 | Minus |
3L | 28103327 | 3L | 6708817..6708924 | 1187..1080 | 240 | 81.4 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 1189931..1190663 | 1430..2159 | 97 | <- | Minus |
chr3L | 1190723..1190955 | 1197..1429 | 99 | <- | Minus |
chr3L | 1191015..1191141 | 1070..1196 | 100 | <- | Minus |
chr3L | 1191375..1191656 | 788..1069 | 98 | <- | Minus |
chr3L | 1191719..1191769 | 737..787 | 100 | <- | Minus |
chr3L | 1191843..1192008 | 571..736 | 100 | <- | Minus |
chr3L | 1192115..1192684 | 1..570 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trh-RA | 1..1668 | 60..1727 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trh-RA | 1..1668 | 60..1727 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trh-RA | 1..1668 | 60..1727 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trh-RA | 1..1668 | 60..1727 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trh-RA | 1..1668 | 60..1727 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trh-RA | 21..2179 | 1..2159 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trh-RA | 21..2179 | 1..2159 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trh-RA | 25..2183 | 1..2159 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trh-RA | 21..2179 | 1..2159 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trh-RA | 25..2183 | 1..2159 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1190384..1191113 | 1430..2159 | 100 | <- | Minus |
3L | 1191173..1191405 | 1197..1429 | 100 | <- | Minus |
3L | 1191465..1191591 | 1070..1196 | 100 | <- | Minus |
3L | 1191825..1192106 | 788..1069 | 100 | <- | Minus |
3L | 1192184..1192234 | 737..787 | 100 | <- | Minus |
3L | 1192308..1192473 | 571..736 | 100 | <- | Minus |
3L | 1192580..1193149 | 1..570 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1190384..1191113 | 1430..2159 | 100 | <- | Minus |
3L | 1191173..1191405 | 1197..1429 | 100 | <- | Minus |
3L | 1191465..1191591 | 1070..1196 | 100 | <- | Minus |
3L | 1191825..1192106 | 788..1069 | 100 | <- | Minus |
3L | 1192184..1192234 | 737..787 | 100 | <- | Minus |
3L | 1192308..1192473 | 571..736 | 100 | <- | Minus |
3L | 1192580..1193149 | 1..570 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1190384..1191113 | 1430..2159 | 100 | <- | Minus |
3L | 1191173..1191405 | 1197..1429 | 100 | <- | Minus |
3L | 1191465..1191591 | 1070..1196 | 100 | <- | Minus |
3L | 1191825..1192106 | 788..1069 | 100 | <- | Minus |
3L | 1192184..1192234 | 737..787 | 100 | <- | Minus |
3L | 1192308..1192473 | 571..736 | 100 | <- | Minus |
3L | 1192580..1193149 | 1..570 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 1191825..1192106 | 788..1069 | 100 | <- | Minus |
arm_3L | 1192184..1192234 | 737..787 | 100 | <- | Minus |
arm_3L | 1192308..1192473 | 571..736 | 100 | <- | Minus |
arm_3L | 1190384..1191113 | 1430..2159 | 100 | <- | Minus |
arm_3L | 1191173..1191405 | 1197..1429 | 100 | <- | Minus |
arm_3L | 1191465..1191591 | 1070..1196 | 100 | <- | Minus |
arm_3L | 1192580..1193149 | 1..570 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1190384..1191113 | 1430..2159 | 100 | <- | Minus |
3L | 1191173..1191405 | 1197..1429 | 100 | <- | Minus |
3L | 1191465..1191591 | 1070..1196 | 100 | <- | Minus |
3L | 1191825..1192106 | 788..1069 | 100 | <- | Minus |
3L | 1192184..1192234 | 737..787 | 100 | <- | Minus |
3L | 1192308..1192473 | 571..736 | 100 | <- | Minus |
3L | 1192580..1193149 | 1..570 | 100 | Minus |
Translation from 2 to 1726
> GH12537.hyp YDACARGNRKRVATKCSAVMSASGKSLLGLWLYRSGEQEWAVKQGSPLHQ LKKDSTTSGSSSHPSLGRNASAPPEPPRLAIGGGGQDNGRQHSPGERISI IFTLRNQVGNLARALQVFQELGINVLHLELSPLEMATNQADVLVDVECDQ RRLDQVVKMLNREVASVNYTSVNTQGLARAPSLSACSSFDFGDMVWFPRK ISDLDKAQNVLMYGSELDADHPGFKDPVYRKRREQFSAIANNFKHGNPIP RVQYTPEEVKTWGTVFLELHRLYVLHAVPEYMDNWPELEKYCGYREDNVP QLQDVSVYLKRKTGFQLRPVAGYLSPRDFLSGLAFRVFHCTQYIRHSSDP FYTPEPDCCHELLGHMPLLANSSFAQFSQEIGLASLGASDADIEKLATLY FFTVEFGLCKQADSTFKVYGAGLLSSVAELQHAITAENKIKKFDPEVTCQ QECIITSYQNAYYYTDSFEEAKEQMRAFAESIQRPFGVRYNPYTMSVEVL SNAKKITAVVSELRGDLSIVCSALRKISATDENLDVDSIANMLHNSLNVR GGASGGGGSPCSPDNSDNSTAEGD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Trh-PA | 555 | CG9122-PA | 1..555 | 20..574 | 2905 | 100 | Plus |
Hn-PB | 447 | CG7399-PB | 41..445 | 109..527 | 1047 | 50.5 | Plus |
Hn-PC | 452 | CG7399-PC | 46..450 | 109..527 | 1047 | 50.5 | Plus |
Hn-PA | 452 | CG7399-PA | 46..450 | 109..527 | 1047 | 50.5 | Plus |
ple-PA | 508 | CG10118-PA | 89..504 | 99..527 | 869 | 42.1 | Plus |
Translation from 59 to 1726
> GH12537.pep MSASGKSLLGLWLYRSGEQEWAVKQGSPLHQLKKDSTTSGSSSHPSLGRN ASAPPEPPRLAIGGGGQDNGRQHSPGERISIIFTLRNQVGNLARALQVFQ ELGINVLHLELSPLEMATNQADVLVDVECDQRRLDQVVKMLNREVASVNY TSVNTQGLARAPSLSACSSFDFGDMVWFPRKISDLDKAQNVLMYGSELDA DHPGFKDPVYRKRREQFSAIANNFKHGNPIPRVQYTPEEVKTWGTVFLEL HRLYVLHAVPEYMDNWPELEKYCGYREDNVPQLQDVSVYLKRKTGFQLRP VAGYLSPRDFLSGLAFRVFHCTQYIRHSSDPFYTPEPDCCHELLGHMPLL ANSSFAQFSQEIGLASLGASDADIEKLATLYFFTVEFGLCKQADSTFKVY GAGLLSSVAELQHAITAENKIKKFDPEVTCQQECIITSYQNAYYYTDSFE EAKEQMRAFAESIQRPFGVRYNPYTMSVEVLSNAKKITAVVSELRGDLSI VCSALRKISATDENLDVDSIANMLHNSLNVRGGASGGGGSPCSPDNSDNS TAEGD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10077-PA | 558 | GF10077-PA | 1..558 | 1..555 | 2771 | 94.3 | Plus |
Dana\GF10325-PA | 452 | GF10325-PA | 46..450 | 90..508 | 1060 | 51.1 | Plus |
Dana\GF10892-PA | 581 | GF10892-PA | 99..577 | 14..508 | 893 | 37.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14621-PA | 559 | GG14621-PA | 1..559 | 1..555 | 2916 | 97 | Plus |
Dere\GG14450-PA | 452 | GG14450-PA | 46..450 | 90..508 | 1074 | 50.5 | Plus |
Dere\GG15029-PA | 581 | GG15029-PA | 162..577 | 80..508 | 898 | 42.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15664-PA | 578 | GH15664-PA | 1..578 | 1..555 | 2546 | 84.7 | Plus |
Dgri\GH14976-PA | 452 | GH14976-PA | 46..450 | 90..508 | 1049 | 49.6 | Plus |
Dgri\GH15635-PA | 574 | GH15635-PA | 135..570 | 60..508 | 907 | 40.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Trh-PA | 555 | CG9122-PA | 1..555 | 1..555 | 2905 | 100 | Plus |
Hn-PB | 447 | CG7399-PB | 41..445 | 90..508 | 1047 | 50.5 | Plus |
Hn-PC | 452 | CG7399-PC | 46..450 | 90..508 | 1047 | 50.5 | Plus |
Hn-PA | 452 | CG7399-PA | 46..450 | 90..508 | 1047 | 50.5 | Plus |
ple-PA | 508 | CG10118-PA | 89..504 | 80..508 | 869 | 42.1 | Plus |
ple-PC | 579 | CG10118-PC | 160..575 | 80..508 | 869 | 42.1 | Plus |
ple-PB | 579 | CG10118-PB | 160..575 | 80..508 | 869 | 42.1 | Plus |
Hn-PD | 178 | CG7399-PD | 2..176 | 333..508 | 492 | 54.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12709-PA | 565 | GI12709-PA | 1..565 | 1..555 | 2570 | 85.9 | Plus |
Dmoj\GI13137-PA | 452 | GI13137-PA | 46..450 | 90..508 | 1061 | 50.8 | Plus |
Dmoj\GI12682-PA | 576 | GI12682-PA | 157..572 | 80..508 | 904 | 42.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24728-PA | 542 | GL24728-PA | 1..535 | 1..516 | 2521 | 88.8 | Plus |
Dper\GL25460-PA | 465 | GL25460-PA | 156..463 | 244..553 | 1545 | 92.9 | Plus |
Dper\GL18039-PA | 452 | GL18039-PA | 46..450 | 90..508 | 1053 | 50.4 | Plus |
Dper\GL13238-PA | 575 | GL13238-PA | 156..571 | 80..508 | 892 | 42.1 | Plus |
Dper\GL25460-PA | 465 | GL25460-PA | 1..131 | 1..113 | 451 | 72.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21560-PA | 572 | GA21560-PA | 1..570 | 1..553 | 2655 | 88 | Plus |
Dpse\GA20325-PA | 452 | GA20325-PA | 46..450 | 90..508 | 1053 | 50.4 | Plus |
Dpse\GA10085-PA | 575 | GA10085-PA | 102..571 | 27..508 | 893 | 38.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14234-PA | 555 | GM14234-PA | 1..555 | 1..555 | 2972 | 99.1 | Plus |
Dsec\GM25002-PA | 452 | GM25002-PA | 46..450 | 90..508 | 1074 | 50.7 | Plus |
Dsec\GM13828-PA | 226 | GM13828-PA | 1..222 | 286..508 | 629 | 53.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13494-PA | 555 | GD13494-PA | 1..555 | 1..555 | 2977 | 99.1 | Plus |
Dsim\GD14035-PA | 452 | GD14035-PA | 46..450 | 90..508 | 1074 | 50.7 | Plus |
Dsim\GD13115-PA | 579 | GD13115-PA | 160..575 | 80..508 | 899 | 42.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12694-PA | 540 | GJ12694-PA | 1..540 | 1..555 | 2374 | 80.1 | Plus |
Dvir\GJ13886-PA | 452 | GJ13886-PA | 46..450 | 90..508 | 1060 | 50.6 | Plus |
Dvir\GJ12666-PA | 576 | GJ12666-PA | 157..572 | 80..508 | 907 | 42.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16857-PA | 580 | GK16857-PA | 1..580 | 1..555 | 2589 | 86 | Plus |
Dwil\GK21215-PA | 452 | GK21215-PA | 46..450 | 90..508 | 1065 | 50.8 | Plus |
Dwil\GK12579-PA | 576 | GK12579-PA | 157..572 | 80..508 | 897 | 42.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20982-PA | 558 | GE20982-PA | 1..558 | 1..555 | 2948 | 98 | Plus |
Dyak\Hn-PA | 452 | GE21640-PA | 46..450 | 90..508 | 1071 | 50.5 | Plus |
Dyak\GE20472-PA | 577 | GE20472-PA | 158..573 | 80..508 | 898 | 42.1 | Plus |