Clone GH12548 Report

Search the DGRC for GH12548

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:125
Well:48
Vector:pOT2
Associated Gene/TranscriptCG11236-RA
Protein status:GH12548.pep: gold
Preliminary Size:1300
Sequenced Size:1178

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11236 2001-01-01 Release 2 assignment
CG11236 2002-02-26 Blastp of sequenced clone
CG11236 2003-01-01 Sim4 clustering to Release 3
CG11236 2008-04-29 Release 5.5 accounting
CG11236 2008-08-15 Release 5.9 accounting
CG11236 2008-12-18 5.12 accounting

Clone Sequence Records

GH12548.complete Sequence

1178 bp (1178 high quality bases) assembled on 2002-02-26

GenBank Submission: AY089502

> GH12548.complete
CTGATCGGATTGGAGCAATGCCTAACATTGCAGTTATCGGTGCCGGGGTT
AATGGTGTTGCCAGTGCCATTAAGATACTGGAACACTATGTGAACGATGG
AAAGACACCCATAAAGGTGACGATCATATCGGAGGACTTCACGCCTAACA
CAACTGGAGATGGTTCGGCTGGTCTCTGGGGTCCGTACCTTCTGGGCGGC
ACTTCGCAGGCGAAAGTCTACAAGTGGTCGAAGAGCATGCACCAATTTTT
GGAGAAGATCTGGCTGAGCGAGGATGCCGGAGAGGCTGGCGTTTGTCTGC
TACCCTGCATTCGGCTGAGCACCTCAACGGTGGACACGGTCGAAGATTTT
TGGCGTGACATTGTCTATGGAGCAGTGGATCTGTCCAAGGAACAGCTGGC
TGCCTACAATAAAGGTCGCAGCGTTAAGTTCACGTCTGGTTTATCCTTTG
TTACCTACACCTCGGAGCCCATTAAGCTACTGCCGTATTTGATGAAGCGT
TTCACCCGAAATGGAGGTGTTGTTGTCCGGAAAAGGATTACAGACCTGGA
TGCATTTGTAGCCGATTCCGAGTACGATGTGATAGTCAATTGCTCCGGAT
TGGGCTCTAAGACCCTACTAAACGACGATCAAATGTACGCAGTGCGTGGC
CAAGTTTCCCGGGTGAGGGCCAACTGGATTTTCTCTGCCGTGCTGGACGA
GAGTGATGATGGCAACTATATTATACCCAACACCGAAAGTGTTGTCCTGG
GCGGAACCCATCAGGAGCGGGACTACAACACTAAAGTCTGCCAGAACGAC
AGGCGGATGATCGTCGATGGCTGTCAGCGGTACATTCCTGGTTTGGAGCA
CACGGAGTGCCTCTTTGATTGGGTAGGTCTCCGGCCGGGTCGCACCCAAC
TCCGACTGGAAGCCGAGCGCCGCGGCCGCAAGCTCCTCATCCACAACTAT
GGACATGGCGGCAGTGGAGTCACTTTGTGCTGGGGCTGTGCCGACGATGT
CCTCAATATCCTGTTGGCCGCCAAGAACGGTTCCAAATTATAAGTCAGTT
GGAAAGATTATTATTTTAGTTCTATAACAAAATTGGTAGTGTAAAGGTAA
CAGCATTTAAAAGCATCTCTTTATCTACATAATAAACATTTTAATATATT
TCATTACAAAAAAAAAAAAAAAAAAAAA

GH12548.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:24:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG11236-RA 1191 CG11236-RA 35..1191 1..1157 5785 100 Plus
CG11236.a 1160 CG11236.a 13..742 1..730 3650 100 Plus
CG11236.a 1160 CG11236.a 743..1160 740..1157 2090 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:22:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6802995..6803421 731..1157 2105 99.5 Plus
chr2L 23010047 chr2L 6802641..6802937 434..730 1485 100 Plus
chr2L 23010047 chr2L 6802084..6802303 1..220 1100 100 Plus
chr2L 23010047 chr2L 6802359..6802573 221..435 1075 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:47:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:22:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6803946..6804373 731..1158 2140 100 Plus
2L 23513712 2L 6803592..6803888 434..730 1485 100 Plus
2L 23513712 2L 6803035..6803254 1..220 1100 100 Plus
2L 23513712 2L 6803310..6803524 221..435 1075 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:53:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6803946..6804373 731..1158 2140 100 Plus
2L 23513712 2L 6803592..6803888 434..730 1485 100 Plus
2L 23513712 2L 6803035..6803254 1..220 1100 100 Plus
2L 23513712 2L 6803310..6803524 221..435 1075 100 Plus
Blast to na_te.dros performed on 2019-03-16 07:22:40 has no hits.

GH12548.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:23:44 Download gff for GH12548.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6802084..6802303 1..220 100 -> Plus
chr2L 6802359..6802571 221..433 100 -> Plus
chr2L 6802641..6802937 434..730 100 -> Plus
chr2L 6802995..6803421 731..1157 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:38:17 Download gff for GH12548.complete
Subject Subject Range Query Range Percent Splice Strand
CG11236-RA 1..1026 18..1043 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:36:07 Download gff for GH12548.complete
Subject Subject Range Query Range Percent Splice Strand
CG11236-RA 1..1026 18..1043 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:07:22 Download gff for GH12548.complete
Subject Subject Range Query Range Percent Splice Strand
CG11236-RA 1..1026 18..1043 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:07:32 Download gff for GH12548.complete
Subject Subject Range Query Range Percent Splice Strand
CG11236-RA 1..1026 18..1043 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:30:31 Download gff for GH12548.complete
Subject Subject Range Query Range Percent Splice Strand
CG11236-RA 1..1026 18..1043 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:01:37 Download gff for GH12548.complete
Subject Subject Range Query Range Percent Splice Strand
CG11236-RA 3..1159 1..1157 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:36:07 Download gff for GH12548.complete
Subject Subject Range Query Range Percent Splice Strand
CG11236-RA 3..1159 1..1157 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:07:22 Download gff for GH12548.complete
Subject Subject Range Query Range Percent Splice Strand
CG11236-RA 25..1181 1..1157 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:07:32 Download gff for GH12548.complete
Subject Subject Range Query Range Percent Splice Strand
CG11236-RA 3..1159 1..1157 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:30:31 Download gff for GH12548.complete
Subject Subject Range Query Range Percent Splice Strand
CG11236-RA 25..1181 1..1157 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:23:44 Download gff for GH12548.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6803035..6803254 1..220 100 -> Plus
2L 6803310..6803522 221..433 100 -> Plus
2L 6803592..6803888 434..730 100 -> Plus
2L 6803946..6804372 731..1157 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:23:44 Download gff for GH12548.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6803035..6803254 1..220 100 -> Plus
2L 6803310..6803522 221..433 100 -> Plus
2L 6803592..6803888 434..730 100 -> Plus
2L 6803946..6804372 731..1157 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:23:44 Download gff for GH12548.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6803035..6803254 1..220 100 -> Plus
2L 6803310..6803522 221..433 100 -> Plus
2L 6803592..6803888 434..730 100 -> Plus
2L 6803946..6804372 731..1157 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:07:22 Download gff for GH12548.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6803035..6803254 1..220 100 -> Plus
arm_2L 6803310..6803522 221..433 100 -> Plus
arm_2L 6803592..6803888 434..730 100 -> Plus
arm_2L 6803946..6804372 731..1157 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:41:30 Download gff for GH12548.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6803035..6803254 1..220 100 -> Plus
2L 6803310..6803522 221..433 100 -> Plus
2L 6803592..6803888 434..730 100 -> Plus
2L 6803946..6804372 731..1157 100   Plus

GH12548.hyp Sequence

Translation from 2 to 1042

> GH12548.hyp
DRIGAMPNIAVIGAGVNGVASAIKILEHYVNDGKTPIKVTIISEDFTPNT
TGDGSAGLWGPYLLGGTSQAKVYKWSKSMHQFLEKIWLSEDAGEAGVCLL
PCIRLSTSTVDTVEDFWRDIVYGAVDLSKEQLAAYNKGRSVKFTSGLSFV
TYTSEPIKLLPYLMKRFTRNGGVVVRKRITDLDAFVADSEYDVIVNCSGL
GSKTLLNDDQMYAVRGQVSRVRANWIFSAVLDESDDGNYIIPNTESVVLG
GTHQERDYNTKVCQNDRRMIVDGCQRYIPGLEHTECLFDWVGLRPGRTQL
RLEAERRGRKLLIHNYGHGGSGVTLCWGCADDVLNILLAAKNGSKL*

GH12548.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:32:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG11236-PA 341 CG11236-PA 1..341 6..346 1799 100 Plus
CG11236-PB 338 CG11236-PB 1..338 6..346 1771 99.1 Plus
CG12338-PB 335 CG12338-PB 2..318 8..330 408 31.8 Plus
CG12338-PA 335 CG12338-PA 2..318 8..330 408 31.8 Plus

GH12548.pep Sequence

Translation from 17 to 1042

> GH12548.pep
MPNIAVIGAGVNGVASAIKILEHYVNDGKTPIKVTIISEDFTPNTTGDGS
AGLWGPYLLGGTSQAKVYKWSKSMHQFLEKIWLSEDAGEAGVCLLPCIRL
STSTVDTVEDFWRDIVYGAVDLSKEQLAAYNKGRSVKFTSGLSFVTYTSE
PIKLLPYLMKRFTRNGGVVVRKRITDLDAFVADSEYDVIVNCSGLGSKTL
LNDDQMYAVRGQVSRVRANWIFSAVLDESDDGNYIIPNTESVVLGGTHQE
RDYNTKVCQNDRRMIVDGCQRYIPGLEHTECLFDWVGLRPGRTQLRLEAE
RRGRKLLIHNYGHGGSGVTLCWGCADDVLNILLAAKNGSKL*

GH12548.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15429-PA 341 GF15429-PA 1..341 1..341 1571 83.6 Plus
Dana\GF11092-PA 335 GF11092-PA 2..325 3..332 422 31 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10434-PA 341 GG10434-PA 1..341 1..341 1660 88 Plus
Dere\GG22723-PA 335 GG22723-PA 2..332 3..339 421 30.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:39:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13713-PA 341 GH13713-PA 1..341 1..341 1418 74.8 Plus
Dgri\GH24186-PA 335 GH24186-PA 2..335 3..341 424 31.7 Plus
Dgri\GH20617-PA 335 GH20617-PA 2..335 3..341 422 31.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG11236-PA 341 CG11236-PA 1..341 1..341 1799 100 Plus
CG11236-PB 338 CG11236-PB 1..338 1..341 1771 99.1 Plus
CG12338-PB 335 CG12338-PB 2..318 3..325 408 31.8 Plus
CG12338-PA 335 CG12338-PA 2..318 3..325 408 31.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:39:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23973-PA 341 GI23973-PA 1..341 1..341 1446 76.8 Plus
Dmoj\GI20172-PA 335 GI20172-PA 2..325 3..332 426 31.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:39:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26186-PA 342 GL26186-PA 1..342 1..341 1571 83.3 Plus
Dper\GL17186-PA 335 GL17186-PA 2..325 3..332 430 32.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:39:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10855-PA 342 GA10855-PA 1..342 1..341 1563 83 Plus
Dpse\GA24279-PA 327 GA24279-PA 1..257 1..256 1179 84.4 Plus
Dpse\GA28065-PA 199 GA28065-PA 4..199 146..341 877 79.6 Plus
Dpse\GA11563-PA 335 GA11563-PA 2..325 3..332 430 32.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:39:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16217-PA 341 GM16217-PA 1..341 1..341 1738 95 Plus
Dsec\GM20499-PA 335 GM20499-PA 2..318 3..325 414 31.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:39:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23432-PA 341 GD23432-PA 1..341 1..341 1761 96.5 Plus
Dsim\GD25962-PA 335 GD25962-PA 2..318 3..325 424 32.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:39:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21247-PA 341 GJ21247-PA 1..341 1..341 1451 77.1 Plus
Dvir\GJ20129-PA 335 GJ20129-PA 2..325 3..332 446 31.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:39:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24241-PA 341 GK24241-PA 1..341 1..341 1388 73.4 Plus
Dwil\GK23907-PA 334 GK23907-PA 2..325 3..332 420 31.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:40:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14132-PA 341 GE14132-PA 1..341 1..341 1735 93.8 Plus
Dyak\GE13080-PA 335 GE13080-PA 2..325 3..332 416 30.9 Plus