Clone GH12549 Report

Search the DGRC for GH12549

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:125
Well:49
Vector:pOT2
Associated Gene/TranscriptCG6282-RA
Protein status:GH12549.pep: gold
Preliminary Size:3434
Sequenced Size:3321

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6282 2001-01-01 Release 2 assignment
CG6282 2001-07-04 Blastp of sequenced clone
CG6282 2003-01-01 Sim4 clustering to Release 3
CG6282 2008-04-29 Release 5.5 accounting
CG6282 2008-08-15 Release 5.9 accounting
CG6282 2008-12-18 5.12 accounting

Clone Sequence Records

GH12549.complete Sequence

3321 bp (3321 high quality bases) assembled on 2001-07-04

GenBank Submission: AY060283

> GH12549.complete
TCGTCTGTTGCGTCGGTTGCTCGAGTCCCTTCCGTTGGCCAAAAAACTCG
CGGCGGCCGTTCTGTTTGTTTTCGCCTCGTAGATGCTGTCTGCAATCAAG
AAGCAAAAAAAAAGGCATTGAAAGCAATAAAAACCAGAGCCAGCGCGGCA
ACAAGGAGAGAAATTAAGCGTTAGAGCGGCAGGAAACAAACAAAAAAAAA
TCGTAACTAATCACCAGGCCACTTTTGGCCATTTTGTGGCATAAGCGGAA
ACGGAAATAGACGACCCCAATATAAACAATCATCACATAAATACGTAATC
AACAAGCGGCCCCAAAAAAAAGGCAGACAGCGACTCCTTGGCAGGCGTCC
AACGCCATAGACCACCACCACCCGCCATCCACACCACCCAGCCACCCAAC
CACTGAGCCACCCACCACAGCATGTAAAGCCCTGTGGGCGGTGGGAGTGG
CACACACAGACAGCACTTTGAAGGCGACTTTTGGCTAGGTGTGGATGAAG
CGATGTGAAGGCACAACATTTTGCAATATTAAAGAACAGCAAAGGGAAGG
AGGAGCCAGAGGAGCAGGAGGAGCAGGTGGGTCAGGTGGACAAAGACCAG
GACCTGTTGCCAACACGTCCACAAAGCGAGCGGATTGGGTGAAAGCCTGT
CTGGCTGGGTGAAAGGTGAAAGCCGAGCGCCGCAACACAATGGCCGTAAA
TGTACTGGACTACGATCACTTCGCCATTAGCGCCATCGTGGTGGGGAGCC
TGCAGTTGGTCTTCTTTCTGATCAACTCTGTGCTCCAAATGGACAAGCTG
ACGGACTTTGCCGGCGGCGTTAACTTCATCATCATCTCCCTGCTCACTTT
CTTTCTCGGCCAAATCGATCGTCCATCGAAGGCCTACGATAGTCGCCAGC
TGATGGTCACGCTCTTCGTTTGCCTGTGGGGCGCTCGGCTGTCCGGATAT
TTACTATATCGAATCGTAAAGTTGGGTCGCGACAAACAGTTCGAGGATAC
CCGTCGCAACATCATCCGCTATGCGGTCTTCTGGACCTTCCAGGCTGTTT
GGGTGTACATTGTGTCACTGCCTGTAATAATAATTAATTCACCGCGCCAC
TCGCAGCCGCGTGCCCCAAAGACCATGACCACACTGGACTCCACGGGCAC
GGGCATGTTCATCGTTGGCCTGCTGGCGGAGACCTATGCGGATCTGCAGA
AGTTCTCCTTCCGCCAGGATCCGGCCAATCAGGGCAAGTTCTGCAATGAT
GGACTGTGGAGCGTGTCGCGGCATCCGAACTACTTTGGCGAAGTGGTCAT
CTGGTGGGGCATCTTTGCCATATCCCTCAATGTGATCAGTGGCCACGAGT
GGGTGGCGATTGCCTCGCCCATTTTCACTACGATGATCATTCTCTTTCTG
TCGGGGATTCCCCTGCGAGAACGAAGCGCCGATGAGAAGTACAAAGATCA
ACTGGAGTACCGGAAGTACAAAGCCTCCACCTCGCCACTGATACCAGTGC
CTCCTGCTGTCTACGTGGAGGTGCCCAGTGCTTTGAAGTTCATCCTGTGC
TGCGAGTTCCCCATCTACGATTCGATGCGAATTCAAAAGGACCTCAGTCC
ATACTCCCTGTCCATAGCACGCTCCCACTCGCACATCTAGCAGTCAGTGG
CCCACTCCAGCAGTGCAGCTGGGGTGGGTCAGATGAATGCCCATGGCCAT
TCGGTGGGTCACTCCCTACACCGGGGTCAGTGCTATGGAGCCAATGGCGG
CGATGCCGAGAGCCACCAGAACTGCGGCGGTAGCTGCCGGAACGTGCACG
TCAAGTCGAATCCGTACCAGTGCGAGGCGGGCTATGGCCACTATCCGGTT
TGCCACACGGACGACGATACGGATGACGGAATCATTTACATGGACCGCAC
CCACTTCTACCACGACCAGGAGCAGGCGCACGTGGTGAAATCGGTGGCGG
TTCCCAGTACAAAGTGCAGCTACCTGGCCGAGGAGGAGCTGGCCTCCGAC
TACGATGAGGATGTGCCGGCCATCGATCTCAGCAAGGCCACCAGTGTGGA
GAGCTTAGGCACCCGGGTGCAGACGGAGCATGCCGTGAACGCCGATGGGT
TGCCCGTGACAGTGACCACGATTTTGTGATTGCCACTTTAAGATTTGGTC
GCGATCAGTGTCAGGTTATTCGGATCGGGTTTTTATATCGGTTGTACAAC
GGGTGGAACTCTTTTGCTCGAATTTTATACCTTTGAAATGATTATCTGCT
TTTTGGGGGATATAATTGTTCAGCAAATTCATGCCGCGAAGTAATATTCT
TCTATACTAATGAGATATATTTATTCGCAATTTGGTAAATAGATAAAGAT
ATCTGTTTTTTGCAAAATAAGCTGGGCACAAATAAATCAAATTTAAAAGT
CTTAAATCTAATTTCGGTGTGTAAAGGACAAAGATAAGAAATGTTAGGAG
ATCGATGGTAAAAAATCTTTTTTCAAACCAAAACCTCGTAGTCCAAGATG
AATGTTCTTGTATATAGAATGAATAACCAAATATGTTAAAGATATTAGAT
ATAAAATTCTTTCCACACTCTTGTGCATAATTGAAGCCAGGCCTAAAAGT
GCTGGCCCGAAATGACATTTTTTTTTGATGACGAATGCCAAAGTACCGTA
GAGTACCCAGCATCATGGATACTCACAGCTGTTTAACACTCTAGTCTCTA
TGCTACTGTTGCTCAAATAACTAATGTGCCTCTTATGTGCTCTGCGCACC
CCTAGATTGTTGCACTCCTTCAAAGTTTACGCTAGTCTCTGTTGAATCCA
CTGTTGCTCCCCCCTCTCAAAGAACGAACTTCAACTATATAGACCTGTAG
CTATATCTAATATACATATATCTATTTCTCAACTGCATACTTTCGCATTA
AACCGCGAACCGCAAACCACACACCCCACCAAACGAAAGGAATCGAATCT
GAAGCCATTTAAACTAAAACATATCCCGAGGCAACGGCAACCCAACCAAA
GGACGATTTACACATACAATAAGTACAAGAATTGTCGCAGTGAATTACGA
TAGAGGACGTTCGATAGCCAATGTTATTTTATATACCGGAATATATGTAT
GTATATCTGCTCACTGTAGCTAAATCGAAATATACCCATGTATGGAAGTT
ACCACAAATGTTGCCCCATTAGTGTACGTATACGTGACGTGTCTGTGTCT
AGTTGGTGTCTCAAATGTTAAGCAGTATTATAACTAATGAACGAATTGTA
CCTAAATGATTATGCTGAGTATGGAAACTAATAAACGAAACCAAAGTAAA
TGTAAAAAAAAAAAAAAAAAA

GH12549.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:36:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG6282-RA 3483 CG6282-RA 41..3346 1..3306 16515 99.9 Plus
CG6282-RC 3679 CG6282-RC 495..3542 259..3306 15240 100 Plus
CG6282-RB 3791 CG6282-RB 607..3654 259..3306 15240 100 Plus
CG6282-RC 3679 CG6282-RC 41..304 1..264 1290 99.2 Plus
CG6282-RB 3791 CG6282-RB 41..242 1..202 995 99.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:00:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8607244..8609099 1448..3303 9280 100 Plus
chr3L 24539361 chr3L 8601759..8602382 259..882 3120 100 Plus
chr3L 24539361 chr3L 8606625..8606835 1042..1252 1055 100 Plus
chr3L 24539361 chr3L 8596675..8596921 1..258 1025 95 Plus
chr3L 24539361 chr3L 8606892..8607088 1251..1447 985 100 Plus
chr3L 24539361 chr3L 8605681..8605845 880..1044 825 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:47:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:00:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8615219..8617077 1448..3306 9295 100 Plus
3L 28110227 3L 8609734..8610357 259..882 3120 100 Plus
3L 28110227 3L 8604657..8604914 1..258 1275 99.6 Plus
3L 28110227 3L 8614600..8614810 1042..1252 1055 100 Plus
3L 28110227 3L 8614867..8615063 1251..1447 985 100 Plus
3L 28110227 3L 8613656..8613820 880..1044 825 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8608319..8610177 1448..3306 9295 100 Plus
3L 28103327 3L 8602834..8603457 259..882 3120 100 Plus
3L 28103327 3L 8597757..8598014 1..258 1275 99.6 Plus
3L 28103327 3L 8607700..8607910 1042..1252 1055 100 Plus
3L 28103327 3L 8607967..8608163 1251..1447 985 100 Plus
3L 28103327 3L 8606756..8606920 880..1044 825 100 Plus
Blast to na_te.dros performed on 2019-03-15 22:00:40 has no hits.

GH12549.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:01:21 Download gff for GH12549.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8596675..8596921 1..258 94 -> Plus
chr3L 8601759..8602381 259..881 92 -> Plus
chr3L 8605683..8605844 882..1043 100 -> Plus
chr3L 8606627..8606834 1044..1251 100 -> Plus
chr3L 8606893..8607088 1252..1447 100 -> Plus
chr3L 8607244..8609099 1448..3303 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:33:30 Download gff for GH12549.complete
Subject Subject Range Query Range Percent Splice Strand
CG6282-RC 1..951 690..1640 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:27:29 Download gff for GH12549.complete
Subject Subject Range Query Range Percent Splice Strand
CG6282-RC 1..951 690..1640 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:05:45 Download gff for GH12549.complete
Subject Subject Range Query Range Percent Splice Strand
CG6282-RD 1..1440 690..2129 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:00:45 Download gff for GH12549.complete
Subject Subject Range Query Range Percent Splice Strand
CG6282-RB 1..951 690..1640 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:09:31 Download gff for GH12549.complete
Subject Subject Range Query Range Percent Splice Strand
CG6282-RD 1..1440 690..2129 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:33:30 Download gff for GH12549.complete
Subject Subject Range Query Range Percent Splice Strand
CG6282-RA 1..3303 1..3303 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:27:29 Download gff for GH12549.complete
Subject Subject Range Query Range Percent Splice Strand
CG6282-RA 1..3303 1..3303 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:05:45 Download gff for GH12549.complete
Subject Subject Range Query Range Percent Splice Strand
CG6282-RA 1..3303 1..3303 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:00:45 Download gff for GH12549.complete
Subject Subject Range Query Range Percent Splice Strand
CG6282-RA 1..3303 1..3303 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:31 Download gff for GH12549.complete
Subject Subject Range Query Range Percent Splice Strand
CG6282-RA 1..3303 1..3303 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:01:21 Download gff for GH12549.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8604657..8604914 1..258 99 -> Plus
3L 8609734..8610356 259..881 100 -> Plus
3L 8613658..8613819 882..1043 100 -> Plus
3L 8614602..8614809 1044..1251 100 -> Plus
3L 8614868..8615063 1252..1447 100 -> Plus
3L 8615219..8617074 1448..3303 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:01:21 Download gff for GH12549.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8604657..8604914 1..258 99 -> Plus
3L 8609734..8610356 259..881 100 -> Plus
3L 8613658..8613819 882..1043 100 -> Plus
3L 8614602..8614809 1044..1251 100 -> Plus
3L 8614868..8615063 1252..1447 100 -> Plus
3L 8615219..8617074 1448..3303 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:01:21 Download gff for GH12549.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8604657..8604914 1..258 99 -> Plus
3L 8609734..8610356 259..881 100 -> Plus
3L 8613658..8613819 882..1043 100 -> Plus
3L 8614602..8614809 1044..1251 100 -> Plus
3L 8614868..8615063 1252..1447 100 -> Plus
3L 8615219..8617074 1448..3303 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:05:45 Download gff for GH12549.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8597757..8598014 1..258 99 -> Plus
arm_3L 8602834..8603456 259..881 100 -> Plus
arm_3L 8606758..8606919 882..1043 100 -> Plus
arm_3L 8607702..8607909 1044..1251 100 -> Plus
arm_3L 8607968..8608163 1252..1447 100 -> Plus
arm_3L 8608319..8610174 1448..3303 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:38:36 Download gff for GH12549.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8606758..8606919 882..1043 100 -> Plus
3L 8607702..8607909 1044..1251 100 -> Plus
3L 8607968..8608163 1252..1447 100 -> Plus
3L 8597757..8598014 1..258 99 -> Plus
3L 8602834..8603456 259..881 100 -> Plus
3L 8608319..8610174 1448..3303 100   Plus

GH12549.pep Sequence

Translation from 689 to 1639

> GH12549.pep
MAVNVLDYDHFAISAIVVGSLQLVFFLINSVLQMDKLTDFAGGVNFIIIS
LLTFFLGQIDRPSKAYDSRQLMVTLFVCLWGARLSGYLLYRIVKLGRDKQ
FEDTRRNIIRYAVFWTFQAVWVYIVSLPVIIINSPRHSQPRAPKTMTTLD
STGTGMFIVGLLAETYADLQKFSFRQDPANQGKFCNDGLWSVSRHPNYFG
EVVIWWGIFAISLNVISGHEWVAIASPIFTTMIILFLSGIPLRERSADEK
YKDQLEYRKYKASTSPLIPVPPAVYVEVPSALKFILCCEFPIYDSMRIQK
DLSPYSLSIARSHSHI*

GH12549.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:06:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24337-PA 474 GF24337-PA 1..317 1..315 1617 95.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:06:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14329-PA 463 GG14329-PA 1..320 1..315 1624 95.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:06:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15317-PA 315 GH15317-PA 1..315 1..316 1420 85.1 Plus
Dgri\GH22521-PA 477 GH22521-PA 1..320 1..315 1390 82.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG6282-PD 479 CG6282-PD 1..316 1..316 1643 100 Plus
CG6282-PC 316 CG6282-PC 1..316 1..316 1643 100 Plus
CG6282-PB 316 CG6282-PB 1..316 1..316 1643 100 Plus
CG6282-PA 316 CG6282-PA 1..316 1..316 1643 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:06:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12913-PA 472 GI12913-PA 1..309 1..310 1443 82.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:06:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10323-PA 483 GL10323-PA 1..326 1..315 1554 89.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:06:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19486-PA 316 GA19486-PA 1..316 1..316 1640 96.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:06:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25072-PA 316 GM25072-PA 1..316 1..316 1677 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:06:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14109-PA 316 GD14109-PA 1..316 1..316 1677 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:06:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13055-PA 315 GJ13055-PA 1..315 1..316 1438 84.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:06:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13083-PA 479 GK13083-PA 1..272 1..272 1390 93.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:06:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20757-PA 462 GE20757-PA 1..320 1..315 1621 95.6 Plus

GH12549.hyp Sequence

Translation from 689 to 1639

> GH12549.hyp
MAVNVLDYDHFAISAIVVGSLQLVFFLINSVLQMDKLTDFAGGVNFIIIS
LLTFFLGQIDRPSKAYDSRQLMVTLFVCLWGARLSGYLLYRIVKLGRDKQ
FEDTRRNIIRYAVFWTFQAVWVYIVSLPVIIINSPRHSQPRAPKTMTTLD
STGTGMFIVGLLAETYADLQKFSFRQDPANQGKFCNDGLWSVSRHPNYFG
EVVIWWGIFAISLNVISGHEWVAIASPIFTTMIILFLSGIPLRERSADEK
YKDQLEYRKYKASTSPLIPVPPAVYVEVPSALKFILCCEFPIYDSMRIQK
DLSPYSLSIARSHSHI*

GH12549.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:32:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG6282-PC 316 CG6282-PC 1..316 1..316 1643 100 Plus
CG6282-PB 316 CG6282-PB 1..316 1..316 1643 100 Plus
CG6282-PA 316 CG6282-PA 1..316 1..316 1643 100 Plus
CG6282-PD 479 CG6282-PD 1..316 1..316 1643 100 Plus