Clone GH12641 Report

Search the DGRC for GH12641

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:126
Well:41
Vector:pOT2
Associated Gene/TranscriptGyk-RA
Protein status:GH12641.pep: gold
Preliminary Size:1885
Sequenced Size:1801

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18374 2001-01-01 Release 2 assignment
CG18374 2001-07-04 Blastp of sequenced clone
CG18374 2003-01-01 Sim4 clustering to Release 3
Gyk 2008-04-29 Release 5.5 accounting
Gyk 2008-08-15 Release 5.9 accounting
Gyk 2008-12-18 5.12 accounting

Clone Sequence Records

GH12641.complete Sequence

1801 bp (1801 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051456

> GH12641.complete
AAAGCGTGCTGGCATTTATTGACTGTAAAGGTGAACTCTGGACACCACGT
AAAAAAAATGGATTCTCCCACAACCGAAACGACACCGCCTCCACCCACGC
TATCTGGTCCATTCGTTGGGGCTATTGACGAGGGAACCACTTCCGCGCGA
TTTATTATATTTCGTGCGGGCACTGACGAAATTGTGTGCTTTCATCAGAT
TGAAGTGGAGTCTATTTTCCAGAAGGAGGGATGGTGCGAGCAGGATCCCA
TGGCCATAGTGAATACGGTCAACGAGTGCATCACCGGTGCCTGCAAGAAA
CTTGTGGCCGTGGGCGGGAAGGTTGAGGAAATAATCACGATTGGAATAAC
AAACCAACGCGAGTCCACAGTCGTATGGGATAGAAACTCCGGCCAACCGC
TGGTGAACGCTATCATCTGGCTAGACAATCGTACCACCAGCACGGTGGAG
GAGCTTTTGGAGACTATTCCGAACAATGCCAGGAACATCAACTACCTGCG
CCCATTGTGCGGACTTCCTCTGTCTCCGTACTTTTCGGGCGTGAAACTAC
GCTGGCTTCGAGACAACGTGCCGGTTGTCAGCCAGGCTATGGAGAAGGGC
ACGGCCATGTTTGGCACCATCGACACCTGGCTAATGTATAATCTTACGGG
CGGGAAGGACTGTGGTGTCCACAAGACGGATGTGACCAACGCTTCGCGCA
CTATGCTCATGAACATCGAGACCCTTCAGTGGGATGCCAACTTGCTAAAG
TTCTTTGGGCTGCCCAAGACCATTTTGCCGGAGATCTGCTCGAGCTCAGA
GTTCTATGGCAGCATTGCGCAGGGCGTTCTGCAAGGCATAGGCATAACAT
CGGTTCTGGGCGACCAGCAAGCCGCTCTAGTGGGTCAACAATGCCTGGCC
AAAGGTCAGGCCAAAGCCACTTATGGCACTGGATGTTTTCTGCTTTATAA
CACAGGACCTTCAATTGTACACTCAACGCACGGATTACTAACGACTGTTG
GCTACCAACTAGGACGGAAGGCAGTCCCATTTTACGCCCTTGAGGGAAGC
GTGTCCATTGCCGGTGCAGCATTCAACTGGCTGCGCGACAACATGAACCT
TATTCAAAACTCGGGGCAGATCGAAACCATGGCTAGCACTGTGGACAACT
CTCTTGACGTATACTTCGTACCAGCTTTCAATGGACTCTACGCCCCCTAC
TGGAATCAGGACGCTCGCGGTGTCATTTGTGGACTGAGTGAAGAAACAAC
AAGTGAGCACATAGTAAGAGCCACCCTGGAAGCAGTTTGTTTCCAGGTCC
GTGATATTCTCGATTCGATGCACAAGGACTGCAAGATTCCACTGGCCAAG
CTTATGGTAGACGGGGGCATGACTGTGAATAATCTGTTCCTGCAGCTTCA
ATCCGACCTAGTAGGAATTCAAGTACTCCGGGCGAAGATCGCAGAGACAA
CAGCGCTGGGAGCTGCAATGGCAGCCTACAAAGCCGTTGAAAACCGATAC
CAAATGGAGGCTCCACTCTCTAAATCTGGCCCCCGAGAAGCCATAAAGCC
ATCGATCAGTGCCACCGATCGCAACCTGCGCTACCAAAAGTGGAAAATGG
CTATCGATCGTTCACTGAACTGGGAGACTTCGACGCTTCCACAGGGCGAA
CGGGAGGCCTTTGACGGAGCGTGATCACAGCTAATGTCTGGTAACGTTCA
TGTTCTTCTATTCGTAAATCAATTGCTTGGTTTTTCGTATTCGAAATTTC
CATTTATTACATATACATATAAAAATGTTAATTAAAAAAAAAAAAAAAAA
A

GH12641.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:36:39
Subject Length Description Subject Range Query Range Score Percent Strand
Gyk-RA 1938 Gyk-RA 145..1932 1..1788 8940 100 Plus
Gyk.a 2110 Gyk.a 317..2104 1..1788 8940 100 Plus
Gyk-RB 1746 Gyk-RB 173..1740 221..1788 7840 100 Plus
Gyk-RB 1746 Gyk-RB 145..174 1..30 150 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:06:20
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 202443..203576 1459..326 5670 100 Minus
chr3L 24539361 chr3L 205322..205649 328..1 1640 100 Minus
chr3L 24539361 chr3L 202060..202385 1783..1458 1630 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:47:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:06:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 202488..203621 1459..326 5670 100 Minus
3L 28110227 3L 202100..202430 1788..1458 1655 100 Minus
3L 28110227 3L 205367..205694 328..1 1640 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 202488..203621 1459..326 5670 100 Minus
3L 28103327 3L 202100..202430 1788..1458 1655 100 Minus
3L 28103327 3L 205367..205694 328..1 1640 100 Minus
Blast to na_te.dros performed on 2019-03-15 22:06:19 has no hits.

GH12641.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:06:59 Download gff for GH12641.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 202060..202384 1459..1783 100 <- Minus
chr3L 202444..203574 328..1458 100 <- Minus
chr3L 205323..205649 1..327 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:38:39 Download gff for GH12641.complete
Subject Subject Range Query Range Percent Splice Strand
Gyk-RA 1..1617 58..1674 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:27:30 Download gff for GH12641.complete
Subject Subject Range Query Range Percent Splice Strand
Gyk-RA 1..1617 58..1674 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:08:41 Download gff for GH12641.complete
Subject Subject Range Query Range Percent Splice Strand
Gyk-RA 1..1617 58..1674 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:00:46 Download gff for GH12641.complete
Subject Subject Range Query Range Percent Splice Strand
Gyk-RA 1..1617 58..1674 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:12:03 Download gff for GH12641.complete
Subject Subject Range Query Range Percent Splice Strand
Gyk-RA 1..1617 58..1674 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:27:01 Download gff for GH12641.complete
Subject Subject Range Query Range Percent Splice Strand
Gyk-RA 126..1908 1..1783 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:27:30 Download gff for GH12641.complete
Subject Subject Range Query Range Percent Splice Strand
Gyk-RA 151..1933 1..1783 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:08:41 Download gff for GH12641.complete
Subject Subject Range Query Range Percent Splice Strand
Gyk-RA 151..1933 1..1783 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:00:46 Download gff for GH12641.complete
Subject Subject Range Query Range Percent Splice Strand
Gyk-RA 126..1908 1..1783 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:12:03 Download gff for GH12641.complete
Subject Subject Range Query Range Percent Splice Strand
Gyk-RA 151..1933 1..1783 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:06:59 Download gff for GH12641.complete
Subject Subject Range Query Range Percent Splice Strand
3L 202105..202429 1459..1783 100 <- Minus
3L 202489..203619 328..1458 100 <- Minus
3L 205368..205694 1..327 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:06:59 Download gff for GH12641.complete
Subject Subject Range Query Range Percent Splice Strand
3L 202105..202429 1459..1783 100 <- Minus
3L 202489..203619 328..1458 100 <- Minus
3L 205368..205694 1..327 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:06:59 Download gff for GH12641.complete
Subject Subject Range Query Range Percent Splice Strand
3L 202105..202429 1459..1783 100 <- Minus
3L 202489..203619 328..1458 100 <- Minus
3L 205368..205694 1..327 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:08:41 Download gff for GH12641.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 202105..202429 1459..1783 100 <- Minus
arm_3L 202489..203619 328..1458 100 <- Minus
arm_3L 205368..205694 1..327 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:38:38 Download gff for GH12641.complete
Subject Subject Range Query Range Percent Splice Strand
3L 202105..202429 1459..1783 100 <- Minus
3L 202489..203619 328..1458 100 <- Minus
3L 205368..205694 1..327 100   Minus

GH12641.hyp Sequence

Translation from 1 to 1673

> GH12641.hyp
KACWHLLTVKVNSGHHVKKMDSPTTETTPPPPTLSGPFVGAIDEGTTSAR
FIIFRAGTDEIVCFHQIEVESIFQKEGWCEQDPMAIVNTVNECITGACKK
LVAVGGKVEEIITIGITNQRESTVVWDRNSGQPLVNAIIWLDNRTTSTVE
ELLETIPNNARNINYLRPLCGLPLSPYFSGVKLRWLRDNVPVVSQAMEKG
TAMFGTIDTWLMYNLTGGKDCGVHKTDVTNASRTMLMNIETLQWDANLLK
FFGLPKTILPEICSSSEFYGSIAQGVLQGIGITSVLGDQQAALVGQQCLA
KGQAKATYGTGCFLLYNTGPSIVHSTHGLLTTVGYQLGRKAVPFYALEGS
VSIAGAAFNWLRDNMNLIQNSGQIETMASTVDNSLDVYFVPAFNGLYAPY
WNQDARGVICGLSEETTSEHIVRATLEAVCFQVRDILDSMHKDCKIPLAK
LMVDGGMTVNNLFLQLQSDLVGIQVLRAKIAETTALGAAMAAYKAVENRY
QMEAPLSKSGPREAIKPSISATDRNLRYQKWKMAIDRSLNWETSTLPQGE
REAFDGA*

GH12641.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:34:05
Subject Length Description Subject Range Query Range Score Percent Strand
Gyk-PA 538 CG18374-PA 1..538 20..557 2807 100 Plus
Gyk-PB 474 CG18374-PB 1..474 84..557 2459 100 Plus
Gk-PF 576 CG7995-PF 33..533 39..541 1212 46.3 Plus
Gk-PA 576 CG7995-PA 33..533 39..541 1212 46.3 Plus
Gk-PB 576 CG7995-PB 33..533 39..541 1212 46.3 Plus

GH12641.pep Sequence

Translation from 57 to 1673

> GH12641.pep
MDSPTTETTPPPPTLSGPFVGAIDEGTTSARFIIFRAGTDEIVCFHQIEV
ESIFQKEGWCEQDPMAIVNTVNECITGACKKLVAVGGKVEEIITIGITNQ
RESTVVWDRNSGQPLVNAIIWLDNRTTSTVEELLETIPNNARNINYLRPL
CGLPLSPYFSGVKLRWLRDNVPVVSQAMEKGTAMFGTIDTWLMYNLTGGK
DCGVHKTDVTNASRTMLMNIETLQWDANLLKFFGLPKTILPEICSSSEFY
GSIAQGVLQGIGITSVLGDQQAALVGQQCLAKGQAKATYGTGCFLLYNTG
PSIVHSTHGLLTTVGYQLGRKAVPFYALEGSVSIAGAAFNWLRDNMNLIQ
NSGQIETMASTVDNSLDVYFVPAFNGLYAPYWNQDARGVICGLSEETTSE
HIVRATLEAVCFQVRDILDSMHKDCKIPLAKLMVDGGMTVNNLFLQLQSD
LVGIQVLRAKIAETTALGAAMAAYKAVENRYQMEAPLSKSGPREAIKPSI
SATDRNLRYQKWKMAIDRSLNWETSTLPQGEREAFDGA*

GH12641.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:07:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10570-PA 540 GF10570-PA 8..540 2..538 2601 89.2 Plus
Dana\GF24829-PA 576 GF24829-PA 32..533 19..522 1234 46.2 Plus
Dana\GF24830-PA 552 GF24830-PA 1..504 15..522 1171 44.6 Plus
Dana\GF12283-PA 596 GF12283-PA 10..556 17..535 1007 37.5 Plus
Dana\GF24265-PA 558 GF24265-PA 26..557 2..522 487 29.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:07:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14680-PA 538 GG14680-PA 1..538 1..538 2867 98.7 Plus
Dere\GG14819-PA 576 GG14819-PA 32..533 19..522 1237 46.2 Plus
Dere\GG20235-PA 596 GG20235-PA 10..556 17..535 989 37 Plus
Dere\GG14901-PA 534 GG14901-PA 20..533 16..522 432 27.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15662-PA 536 GH15662-PA 1..536 1..538 2446 83.8 Plus
Dgri\GH15761-PA 573 GH15761-PA 32..533 19..522 1242 46.8 Plus
Dgri\GH20851-PA 596 GH20851-PA 10..556 17..535 970 37.1 Plus
Dgri\GH14570-PA 513 GH14570-PA 2..512 27..522 448 27 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
Gk1-PA 538 CG18374-PA 1..538 1..538 2807 100 Plus
Gk1-PB 474 CG18374-PB 1..474 65..538 2459 100 Plus
Gk2-PF 576 CG7995-PF 33..533 20..522 1212 46.3 Plus
Gk2-PA 576 CG7995-PA 33..533 20..522 1212 46.3 Plus
Gk2-PB 576 CG7995-PB 33..533 20..522 1212 46.3 Plus
Gk2-PD 576 CG7995-PD 33..533 20..522 1212 46.3 Plus
Gk2-PE 576 CG7995-PE 33..533 20..522 1212 46.3 Plus
Gk2-PC 576 CG7995-PC 33..533 20..522 1212 46.3 Plus
CG8298-PC 596 CG8298-PC 10..556 17..535 971 36.8 Plus
CG8298-PA 596 CG8298-PA 10..556 17..535 971 36.8 Plus
CG1271-PD 539 CG1271-PD 17..538 2..522 421 27.5 Plus
CG1271-PA 556 CG1271-PA 17..555 2..522 420 27.8 Plus
CG1271-PB 406 CG1271-PB 44..405 174..522 352 29.2 Plus
CG1271-PC 384 CG1271-PC 44..336 174..454 289 28.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12707-PA 535 GI12707-PA 12..534 15..537 2454 85.3 Plus
Dmoj\GI12540-PA 577 GI12540-PA 32..533 19..522 1259 47.2 Plus
Dmoj\GI20956-PA 596 GI20956-PA 10..556 17..535 994 37.8 Plus
Dmoj\GI13897-PA 515 GI13897-PA 8..514 20..522 442 27.3 Plus
Dmoj\GI14566-PA 149 GI14566-PA 1..105 421..522 195 36.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:07:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16108-PA 474 GL16108-PA 1..474 65..538 2334 90.3 Plus
Dper\GL20743-PA 576 GL20743-PA 32..533 19..522 1228 46.2 Plus
Dper\GL10517-PA 596 GL10517-PA 10..556 17..535 984 37 Plus
Dper\GL20781-PA 531 GL20781-PA 26..530 23..522 424 26 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:07:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14911-PA 532 GA14911-PA 3..532 9..538 2597 89.6 Plus
Dpse\GA20751-PA 576 GA20751-PA 32..533 19..522 1229 46.2 Plus
Dpse\GA20966-PA 596 GA20966-PA 10..556 17..535 984 36.8 Plus
Dpse\GA11767-PA 531 GA11767-PA 22..530 19..522 434 26.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:07:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14296-PA 538 GM14296-PA 1..538 1..538 2887 99.6 Plus
Dsec\GM14440-PA 576 GM14440-PA 32..533 19..522 1234 46.2 Plus
Dsec\GM21324-PA 596 GM21324-PA 10..556 17..535 972 35.9 Plus
Dsec\GM14527-PA 537 GM14527-PA 16..536 2..522 423 26.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:07:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13534-PA 538 GD13534-PA 1..538 1..538 2887 99.6 Plus
Dsim\GD13642-PA 553 GD13642-PA 32..510 19..522 1120 42.8 Plus
Dsim\GD10831-PA 596 GD10831-PA 10..556 17..535 981 36.3 Plus
Dsim\GD13724-PA 538 GD13724-PA 17..537 2..522 421 27.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:07:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12691-PA 524 GJ12691-PA 1..524 15..538 2459 85.7 Plus
Dvir\GJ16056-PA 577 GJ16056-PA 32..533 19..522 1255 46.8 Plus
Dvir\GJ20677-PA 596 GJ20677-PA 10..556 17..535 1002 37.9 Plus
Dvir\GJ11752-PA 515 GJ11752-PA 9..514 20..522 447 27.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:07:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16855-PA 536 GK16855-PA 13..536 15..538 2447 85.5 Plus
Dwil\GK16636-PA 576 GK16636-PA 32..533 19..522 1243 47 Plus
Dwil\GK19496-PA 596 GK19496-PA 10..556 17..535 997 38 Plus
Dwil\GK12322-PA 533 GK12322-PA 20..532 19..522 432 27.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:07:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21041-PA 538 GE21041-PA 1..538 1..538 2854 98.3 Plus
Dyak\GE21182-PA 576 GE21182-PA 32..533 19..522 1238 46.2 Plus
Dyak\GE12395-PA 596 GE12395-PA 10..556 17..535 982 36.6 Plus
Dyak\GE20355-PA 538 GE20355-PA 17..537 2..522 438 27.1 Plus