Clone GH12661 Report

Search the DGRC for GH12661

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:126
Well:61
Vector:pOT2
Associated Gene/TranscriptCG32262-RA
Protein status:GH12661.pep: gold
Preliminary Size:1168
Sequenced Size:1062

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10854 2001-01-01 Release 2 assignment
CG32262 2001-11-09 Blastp of sequenced clone
CG32262 2003-01-01 Sim4 clustering to Release 3
CG32262 2008-04-29 Release 5.5 accounting
CG32262 2008-08-15 Release 5.9 accounting
CG32262 2008-12-18 5.12 accounting

Clone Sequence Records

GH12661.complete Sequence

1062 bp (1062 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069111

> GH12661.complete
TAACGTAAATCAAAAACACACGGGACTACAGTAGTCGCAAATTGCAGTGG
CTGCGAACGATGTTTGGCACTCGTTGCCTGCGCCAGTGCTACAGTCTCCG
AATCCATGGCTCCCACAATTCCCGCAGAGATTTTGCGGCTCTGTGCCGGA
TGAGAAGCCATGGTGTGGGATACCAAAAGTACGGACTTCGTTTTACCCAT
GGCAAGGGGGAAACGGAGGGTGGAGCGCTTAGTTTCATACTGCTGCGATG
GACTAAGATCGCGTGGAGCAACATGTTCGGCAAGTATCTGCTCGTTACGA
ACGTGGTGGGCTCCGGACTGCTGATGGTCGTGGGCGATGTGATAGCCCAG
GAGTACGAGTACAGGCGTGGATTGCGGCACCAGGACCGCTTCGATACGGA
TCGCATGTACCGGATGTTTGTGGCTGGCGCGCTGCAGGGACCTCTTCACC
ACTACGTGTACAACTGGATGGACAGGGTAATGCCGGCTCGTACGCTAAAG
AACATCTTCAAGAAGATCCTGATTGACCAGCTGGTCATGTCGCCCGCCTG
CATCGTCATATTCTTCTATTCGCTTTGCTATCTGGAGCGCCAGACCCTGG
ACGCCACCAATCAGGAGCTGATCTCCAAGTTCCCGTATGTTTACATGCTG
GATTGGATGACCTGGCCGGCGGCGCAGTACCTGAACTTTCGCTATTTAGA
CACCAAATACCGGGTGACGTTCGTCAATGTGTGCACGGCTGTTTACAATG
TGCTCATGTCCTACATGAAGCACGATTTCGGCGTTCACCTCCCACTGGAG
GAGAAGTTAGTTGCGTCCTCCGAGCAGAACCTATTGCCTCAGAGTTCAAC
GACGAGTCCCGATGCCCAAAAAGCCGTTTAAGACAGAACGAATAGGAATC
GCGGAATAGGTGTGATATCGACAAGAAACCAAATTATTTAGTTATTGTGA
ACACGAGGGTTATTATGTAAATAAGAGGCTCTTAATACCAATAAATATGC
ATGTTTAGTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

GH12661.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:00:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG32262-RA 1036 CG32262-RA 26..1036 1..1011 5055 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:31:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 3808584..3809594 1011..1 4905 99 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:47:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:31:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3809145..3810156 1012..1 5060 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:25:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 3809145..3810156 1012..1 5060 100 Minus
Blast to na_te.dros performed on 2019-03-16 13:31:41 has no hits.

GH12661.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:32:51 Download gff for GH12661.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 3808584..3809594 1..1011 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:38:40 Download gff for GH12661.complete
Subject Subject Range Query Range Percent Splice Strand
CG32262-RA 1..822 60..881 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:33:51 Download gff for GH12661.complete
Subject Subject Range Query Range Percent Splice Strand
CG32262-RA 1..822 60..881 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:19:15 Download gff for GH12661.complete
Subject Subject Range Query Range Percent Splice Strand
CG32262-RA 1..822 60..881 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:01:26 Download gff for GH12661.complete
Subject Subject Range Query Range Percent Splice Strand
CG32262-RA 1..822 60..881 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:20:15 Download gff for GH12661.complete
Subject Subject Range Query Range Percent Splice Strand
CG32262-RA 1..822 60..881 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:13:06 Download gff for GH12661.complete
Subject Subject Range Query Range Percent Splice Strand
CG32262-RA 26..1036 1..1011 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:33:51 Download gff for GH12661.complete
Subject Subject Range Query Range Percent Splice Strand
CG32262-RA 26..1036 1..1011 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:19:15 Download gff for GH12661.complete
Subject Subject Range Query Range Percent Splice Strand
CG32262-RA 41..1051 1..1011 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:01:26 Download gff for GH12661.complete
Subject Subject Range Query Range Percent Splice Strand
CG32262-RA 26..1036 1..1011 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:20:15 Download gff for GH12661.complete
Subject Subject Range Query Range Percent Splice Strand
CG32262-RA 41..1051 1..1011 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:32:51 Download gff for GH12661.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3809146..3810156 1..1011 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:32:51 Download gff for GH12661.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3809146..3810156 1..1011 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:32:51 Download gff for GH12661.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3809146..3810156 1..1011 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:19:15 Download gff for GH12661.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3809146..3810156 1..1011 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:38:20 Download gff for GH12661.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3809146..3810156 1..1011 100   Minus

GH12661.hyp Sequence

Translation from 59 to 880

> GH12661.hyp
MFGTRCLRQCYSLRIHGSHNSRRDFAALCRMRSHGVGYQKYGLRFTHGKG
ETEGGALSFILLRWTKIAWSNMFGKYLLVTNVVGSGLLMVVGDVIAQEYE
YRRGLRHQDRFDTDRMYRMFVAGALQGPLHHYVYNWMDRVMPARTLKNIF
KKILIDQLVMSPACIVIFFYSLCYLERQTLDATNQELISKFPYVYMLDWM
TWPAAQYLNFRYLDTKYRVTFVNVCTAVYNVLMSYMKHDFGVHLPLEEKL
VASSEQNLLPQSSTTSPDAQKAV*

GH12661.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:34:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG32262-PA 273 CG32262-PA 1..273 1..273 1458 100 Plus
CG32263-PA 206 CG32263-PA 33..206 69..245 400 46.3 Plus
CG1662-PB 245 CG1662-PB 62..234 61..238 299 38.2 Plus
CG1662-PA 245 CG1662-PA 62..234 61..238 299 38.2 Plus
CG5906-PA 196 CG5906-PA 16..186 63..238 271 35.8 Plus

GH12661.pep Sequence

Translation from 59 to 880

> GH12661.pep
MFGTRCLRQCYSLRIHGSHNSRRDFAALCRMRSHGVGYQKYGLRFTHGKG
ETEGGALSFILLRWTKIAWSNMFGKYLLVTNVVGSGLLMVVGDVIAQEYE
YRRGLRHQDRFDTDRMYRMFVAGALQGPLHHYVYNWMDRVMPARTLKNIF
KKILIDQLVMSPACIVIFFYSLCYLERQTLDATNQELISKFPYVYMLDWM
TWPAAQYLNFRYLDTKYRVTFVNVCTAVYNVLMSYMKHDFGVHLPLEEKL
VASSEQNLLPQSSTTSPDAQKAV*

GH12661.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10258-PA 293 GF10258-PA 1..281 1..272 1053 71.3 Plus
Dana\GF10257-PA 156 GF10257-PA 1..155 90..241 336 40.6 Plus
Dana\GF19409-PA 254 GF19409-PA 78..245 70..238 290 36.5 Plus
Dana\GF24503-PA 236 GF24503-PA 60..221 75..238 280 38.4 Plus
Dana\GF20998-PA 194 GF20998-PA 41..194 92..248 154 28.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:26:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14245-PA 272 GG14245-PA 1..272 1..263 1292 88.6 Plus
Dere\GG14244-PA 202 GG14244-PA 34..200 69..238 408 48.2 Plus
Dere\GG17779-PA 245 GG17779-PA 68..235 70..239 302 37.1 Plus
Dere\GG13873-PA 196 GG13873-PA 25..186 75..238 255 35.4 Plus
Dere\GG13550-PA 204 GG13550-PA 10..194 71..257 200 28.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:26:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15047-PA 299 GH15047-PA 23..256 23..256 869 68.8 Plus
Dgri\GH24495-PA 245 GH24495-PA 2..222 19..246 279 31.4 Plus
Dgri\GH16716-PA 220 GH16716-PA 16..186 63..238 233 34.6 Plus
Dgri\GH24500-PA 193 GH24500-PA 23..183 75..238 164 24.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG32262-PA 273 CG32262-PA 1..273 1..273 1458 100 Plus
CG32263-PA 206 CG32263-PA 33..206 69..245 400 46.3 Plus
CG1662-PB 245 CG1662-PB 62..234 61..238 299 38.2 Plus
CG1662-PA 245 CG1662-PA 62..234 61..238 299 38.2 Plus
CG5906-PA 196 CG5906-PA 16..186 63..238 271 35.8 Plus
CG12355-PE 204 CG12355-PE 10..194 71..257 186 28.3 Plus
CG12355-PB 204 CG12355-PB 10..194 71..257 186 28.3 Plus
CG14778-PA 186 CG14778-PA 5..176 67..238 154 23 Plus
CG11077-PA 168 CG11077-PA 17..163 88..234 151 24.7 Plus
CG14777-PF 196 CG14777-PF 39..181 92..237 147 28.9 Plus
CG14777-PC 196 CG14777-PC 39..181 92..237 147 28.9 Plus
CG14777-PE 196 CG14777-PE 39..181 92..237 147 28.9 Plus
CG14777-PD 196 CG14777-PD 39..181 92..237 147 28.9 Plus
CG14777-PB 196 CG14777-PB 39..181 92..237 147 28.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:26:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12806-PA 280 GI12806-PA 51..278 42..272 884 67.1 Plus
Dmoj\GI15250-PA 238 GI15250-PA 28..223 48..245 293 33.7 Plus
Dmoj\GI13797-PA 217 GI13797-PA 12..184 61..238 237 35.4 Plus
Dmoj\GI12229-PA 200 GI12229-PA 10..179 71..239 177 27.7 Plus
Dmoj\GI16043-PA 186 GI16043-PA 16..176 75..238 159 24 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:26:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20996-PA 298 GL20996-PA 12..288 2..272 969 67.1 Plus
Dper\GL20995-PA 209 GL20995-PA 1..169 72..243 411 47.1 Plus
Dper\GL26921-PA 239 GL26921-PA 58..230 61..238 294 37.1 Plus
Dper\GL25076-PA 197 GL25076-PA 25..186 75..238 278 36 Plus
Dper\GL25660-PA 199 GL25660-PA 10..194 71..257 170 26.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:26:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23490-PA 298 GA23490-PA 12..288 2..272 971 67.1 Plus
Dpse\GA16798-PA 180 GA16798-PA 1..169 72..243 413 47.1 Plus
Dpse\GA14082-PA 239 GA14082-PA 58..230 61..238 294 37.1 Plus
Dpse\GA19218-PA 197 GA19218-PA 25..186 75..238 278 36 Plus
Dpse\GA23640-PA 199 GA23640-PA 10..194 71..257 170 26.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:26:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14038-PA 282 GM14038-PA 1..282 1..273 1440 95 Plus
Dsec\GM14037-PA 205 GM14037-PA 34..205 69..245 414 46.3 Plus
Dsec\GM11631-PA 245 GM11631-PA 67..235 70..239 297 37.4 Plus
Dsec\GM24695-PA 196 GM24695-PA 25..186 75..238 259 36.6 Plus
Dsec\GM19142-PA 186 GM19142-PA 16..176 75..238 157 24 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13317-PA 282 GD13317-PA 1..282 1..273 1440 95 Plus
Dsim\GD13316-PA 207 GD13316-PA 34..207 69..245 422 46.9 Plus
Dsim\GD17122-PA 245 GD17122-PA 67..235 70..239 297 37.4 Plus
Dsim\GD17579-PA 196 GD17579-PA 25..186 75..238 259 36.6 Plus
Dsim\GD12563-PA 205 GD12563-PA 11..195 71..257 191 28.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12951-PA 285 GJ12951-PA 22..278 5..270 909 63 Plus
Dvir\GJ14822-PA 238 GJ14822-PA 45..222 63..246 283 35.7 Plus
Dvir\GJ11665-PA 192 GJ11665-PA 13..182 60..234 272 37.1 Plus
Dvir\GJ11459-PA 197 GJ11459-PA 10..179 71..239 195 28.9 Plus
Dvir\GJ15555-PA 186 GJ15555-PA 16..176 75..238 153 23.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20364-PA 309 GK20364-PA 23..255 23..250 914 70.4 Plus
Dwil\GK19158-PA 178 GK19158-PA 1..167 72..241 413 45.9 Plus
Dwil\GK25287-PA 231 GK25287-PA 56..228 61..238 292 37.6 Plus
Dwil\GK19153-PA 197 GK19153-PA 5..174 57..231 278 37.1 Plus
Dwil\GK10055-PA 181 GK10055-PA 2..171 69..238 150 23.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20674-PA 272 GE20674-PA 1..272 1..263 1285 87.5 Plus
Dyak\GE20673-PA 207 GE20673-PA 34..207 69..245 405 45.2 Plus
Dyak\GE17073-PA 246 GE17073-PA 69..236 70..239 301 37.1 Plus
Dyak\GE20165-PA 196 GE20165-PA 10..186 57..238 260 35.2 Plus
Dyak\GE19851-PA 204 GE19851-PA 10..194 71..257 189 28.8 Plus