Clone GH12692 Report

Search the DGRC for GH12692

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:126
Well:92
Vector:pOT2
Associated Gene/TranscriptCG1889-RA
Protein status:GH12692.pep: gold
Preliminary Size:1138
Sequenced Size:1215

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1889 2001-01-01 Release 2 assignment
CG1889 2001-09-19 Blastp of sequenced clone
CG1889 2003-01-01 Sim4 clustering to Release 3
CG1889 2008-04-29 Release 5.5 accounting
CG1889 2008-08-15 Release 5.9 accounting
CG1889 2008-12-18 5.12 accounting

Clone Sequence Records

GH12692.complete Sequence

1215 bp (1215 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058355

> GH12692.complete
TTGATGTACACTTTGCGGCTTAGTTAGTTAGTTAGTCAGTCAGCCAGTTA
GCTAGTCGGCCAGTAATCGAAAGTGCCAAAATGTCACAGATGCTGCAGCT
GGATGCCTTGGTCATGGCCATGGCCTGTCTATCCACCACACAAACGGATC
TGGGCGGAGGACTGTTGGTTCCGCCCTCCTTGGGAAATGCGAGTTCCAGC
AGCTGTCCAGTTTCGGCTTTAAGTGGTCTTACCACTCGAATGCAATCGCT
GAACAACGAAATAGCTAGTGTCAAGGAGCAGATAGGCAGTCTCCAGGAGC
AGTTGGTGGATCTGCGAAGAGCGGGAAGTGCACCGGTGGTGGGACTCGCT
TCGCCCAATGCACTGGCATCTCGATTCCTAGACATTGAGCCGCAACTCCT
GGCCAACGGTGGTGCAGCGGCCGTTCCAATCACTCCGGCAAACTGCCTGA
AACAGCAGCACGGTGTGGTGCGAATCAGACCCCGCTCGAACGTGGAACCG
TTCTTTGTTTTTTGCGATCAGAAGGTCAGAAACGGTGGTTGGACAATGGT
AGTTAATCGTTATGATGGCAGTGAGGATTTCAATCGAAAGTGGGCGGATT
ACAAGATCGGTTTCGGGCCACTAACCACCGAGTTCTTCATCGGATTGGAT
AAATTGCATCAGATTACGAGCAGTGACAACTATGAGCTTTTGGTTCAGCT
GCAGAATCGAAAGCAGGAGCTGAGATATGCCCTATATGATCACTTTAGCA
TCGGCAGTGAATCGGAACAGTATCGTCTGAATGTCTTGGGGGATTATCAC
GGCGATGCTGCCGATGCATTGCGTGACCACACGGGAAAGAAATTCAGTAC
CCACGATAGGGTTAATGATGAAAATGAGCAAAACTGCGCGGCTCAGCAGT
CGGGAGCTTTTTGGTATGGCGGCTCTTGCAATCTCACCAACCCATTTGGC
CTATATCAACGCCTTCTAGAACGGGATGTTGATGGTTTCAAGGGCATTCT
ATGGCGCGGTTTCTTAAATGGACCCAAAGGTTCCCTGAAAATAGTTCGCA
TGATGGTTCGTCCACGCGCCGCTTTATAAATAAGTAACTTTATTGACTAC
ACCAGTCGCATATTAAACAAACGCCCAACAAGTTAAGAGATAAAAAAAAA
CAAATGTAATACAAAAGATTAATTAAAAATTAAATTCTATTTAGAAAAAA
AAAAAAAAAAAAAAA

GH12692.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:23:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG1889-RC 1348 CG1889-RC 150..1344 1..1195 5975 100 Plus
CG1889-RA 1591 CG1889-RA 150..1344 1..1195 5975 100 Plus
CG1889-RB 1245 CG1889-RB 43..1241 1..1195 5910 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 9857470..9858030 377..937 2775 99.6 Plus
chrX 22417052 chrX 9858091..9858348 938..1194 1240 99.6 Plus
chrX 22417052 chrX 9856903..9857093 1..191 955 100 Plus
chrX 22417052 chrX 9857218..9857403 191..376 930 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:47:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:37:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9965837..9966397 377..937 2805 100 Plus
X 23542271 X 9966458..9966715 938..1195 1290 100 Plus
X 23542271 X 9965270..9965460 1..191 955 100 Plus
X 23542271 X 9965585..9965770 191..376 930 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 9973935..9974495 377..937 2805 100 Plus
X 23527363 X 9974556..9974813 938..1195 1290 100 Plus
X 23527363 X 9973368..9973558 1..191 955 100 Plus
X 23527363 X 9973683..9973868 191..376 930 100 Plus
Blast to na_te.dros performed 2019-03-16 13:37:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\Mar 610 Dwil\Mar MAR 610bp Derived from AF518731. 139..189 547..497 111 68.6 Minus

GH12692.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:38:38 Download gff for GH12692.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 9857219..9857403 192..376 100 -> Plus
chrX 9857470..9858030 377..937 99 -> Plus
chrX 9858091..9858348 938..1194 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:38:48 Download gff for GH12692.complete
Subject Subject Range Query Range Percent Splice Strand
CG1889-RC 1..999 81..1079 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:08:06 Download gff for GH12692.complete
Subject Subject Range Query Range Percent Splice Strand
CG1889-RC 1..999 81..1079 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:21:31 Download gff for GH12692.complete
Subject Subject Range Query Range Percent Splice Strand
CG1889-RA 1..999 81..1079 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:38:50 Download gff for GH12692.complete
Subject Subject Range Query Range Percent Splice Strand
CG1889-RC 1..999 81..1079 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:23:19 Download gff for GH12692.complete
Subject Subject Range Query Range Percent Splice Strand
CG1889-RA 1..999 81..1079 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:58:22 Download gff for GH12692.complete
Subject Subject Range Query Range Percent Splice Strand
CG1889-RC 30..1223 1..1194 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:08:06 Download gff for GH12692.complete
Subject Subject Range Query Range Percent Splice Strand
CG1889-RC 30..1223 1..1194 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:31 Download gff for GH12692.complete
Subject Subject Range Query Range Percent Splice Strand
CG1889-RA 30..1223 1..1194 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:38:50 Download gff for GH12692.complete
Subject Subject Range Query Range Percent Splice Strand
CG1889-RC 30..1223 1..1194 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:23:19 Download gff for GH12692.complete
Subject Subject Range Query Range Percent Splice Strand
CG1889-RA 30..1223 1..1194 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:38:38 Download gff for GH12692.complete
Subject Subject Range Query Range Percent Splice Strand
X 9965270..9965460 1..191 100 -> Plus
X 9965586..9965770 192..376 100 -> Plus
X 9965837..9966397 377..937 100 -> Plus
X 9966458..9966714 938..1194 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:38:38 Download gff for GH12692.complete
Subject Subject Range Query Range Percent Splice Strand
X 9965270..9965460 1..191 100 -> Plus
X 9965586..9965770 192..376 100 -> Plus
X 9965837..9966397 377..937 100 -> Plus
X 9966458..9966714 938..1194 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:38:38 Download gff for GH12692.complete
Subject Subject Range Query Range Percent Splice Strand
X 9965270..9965460 1..191 100 -> Plus
X 9965586..9965770 192..376 100 -> Plus
X 9965837..9966397 377..937 100 -> Plus
X 9966458..9966714 938..1194 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:31 Download gff for GH12692.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9860491..9860747 938..1194 100   Plus
arm_X 9859303..9859493 1..191 100 -> Plus
arm_X 9859619..9859803 192..376 100 -> Plus
arm_X 9859870..9860430 377..937 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:16:18 Download gff for GH12692.complete
Subject Subject Range Query Range Percent Splice Strand
X 9973368..9973558 1..191 100 -> Plus
X 9973684..9973868 192..376 100 -> Plus
X 9973935..9974495 377..937 100 -> Plus
X 9974556..9974812 938..1194 100   Plus

GH12692.pep Sequence

Translation from 80 to 1078

> GH12692.pep
MSQMLQLDALVMAMACLSTTQTDLGGGLLVPPSLGNASSSSCPVSALSGL
TTRMQSLNNEIASVKEQIGSLQEQLVDLRRAGSAPVVGLASPNALASRFL
DIEPQLLANGGAAAVPITPANCLKQQHGVVRIRPRSNVEPFFVFCDQKVR
NGGWTMVVNRYDGSEDFNRKWADYKIGFGPLTTEFFIGLDKLHQITSSDN
YELLVQLQNRKQELRYALYDHFSIGSESEQYRLNVLGDYHGDAADALRDH
TGKKFSTHDRVNDENEQNCAAQQSGAFWYGGSCNLTNPFGLYQRLLERDV
DGFKGILWRGFLNGPKGSLKIVRMMVRPRAAL*

GH12692.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:02:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19159-PA 338 GF19159-PA 1..337 1..331 1390 78 Plus
Dana\GF19143-PA 324 GF19143-PA 1..321 5..329 780 48.7 Plus
Dana\GF13877-PA 250 GF13877-PA 52..246 129..329 442 47.5 Plus
Dana\GF12573-PA 434 GF12573-PA 128..417 37..330 402 33.3 Plus
Dana\GF12980-PA 268 GF12980-PA 51..264 119..329 377 40.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:02:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18333-PA 332 GG18333-PA 1..330 1..330 1642 92.1 Plus
Dere\GG18953-PA 334 GG18953-PA 1..330 5..328 797 47 Plus
Dere\GG24402-PA 218 GG24402-PA 6..211 119..329 457 47.9 Plus
Dere\GG23629-PA 277 GG23629-PA 83..273 138..330 401 41.5 Plus
Dere\GG22162-PA 291 GG22162-PA 57..276 111..331 397 39.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11810-PA 331 GH11810-PA 1..329 1..331 1090 61.4 Plus
Dgri\GH12910-PA 320 GH12910-PA 1..315 5..328 789 46.4 Plus
Dgri\GH22716-PA 425 GH22716-PA 108..409 29..329 473 36.5 Plus
Dgri\GH23081-PA 301 GH23081-PA 11..288 50..329 465 39.5 Plus
Dgri\GH22253-PA 259 GH22253-PA 88..258 112..284 433 48.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG1889-PC 332 CG1889-PC 1..332 1..332 1731 100 Plus
CG1889-PA 332 CG1889-PA 1..332 1..332 1731 100 Plus
CG1889-PD 338 CG1889-PD 1..338 1..332 1714 98.2 Plus
CG1791-PC 333 CG1791-PC 1..329 5..328 779 47.2 Plus
CG1791-PA 334 CG1791-PA 1..330 5..328 773 47.2 Plus
CG1791-PB 195 CG1791-PB 1..191 138..328 631 58.6 Plus
CG1889-PE 99 CG1889-PE 1..98 1..98 472 100 Plus
CG8642-PB 429 CG8642-PB 125..416 37..332 394 34.4 Plus
CG9500-PB 292 CG9500-PB 88..287 127..329 391 39.9 Plus
CG30281-PA 291 CG30281-PA 63..276 117..331 384 39.3 Plus
CG30280-PD 288 CG30280-PD 51..282 105..332 369 34.9 Plus
CG10359-PG 459 CG10359-PG 173..449 50..328 360 34.5 Plus
CG10359-PE 485 CG10359-PE 199..475 50..328 360 34.5 Plus
CG6788-PA 358 CG6788-PA 178..356 151..329 347 41.1 Plus
CG31832-PB 227 CG31832-PB 42..225 139..329 345 41.7 Plus
CG41520-PD 627 CG41520-PD 404..615 121..329 338 35.5 Plus
CG41520-PA 745 CG41520-PA 522..733 121..329 338 35.5 Plus
CG5550-PA 246 CG5550-PA 45..246 125..329 318 39.3 Plus
CG5550-PB 250 CG5550-PB 45..250 125..329 308 38.3 Plus
CG41520-PB 729 CG41520-PB 522..717 121..329 296 33.2 Plus
sca-PB 799 CG17579-PB 461..734 41..327 278 30 Plus
sca-PA 799 CG17579-PA 461..734 41..327 278 30 Plus
CG9593-PB 382 CG9593-PB 186..370 144..328 276 33.2 Plus
CG7668-PC 422 CG7668-PC 245..420 139..328 248 35.1 Plus
CG7668-PA 422 CG7668-PA 245..420 139..328 248 35.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14614-PA 322 GI14614-PA 1..318 5..328 712 44.1 Plus
Dmoj\GI15995-PA 204 GI15995-PA 36..160 207..331 514 72.8 Plus
Dmoj\GI10115-PA 380 GI10115-PA 195..378 139..329 421 46.6 Plus
Dmoj\GI21094-PA 389 GI21094-PA 110..387 40..331 416 34.7 Plus
Dmoj\GI18820-PA 211 GI18820-PA 15..204 138..330 409 44.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:02:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16385-PA 352 GL16385-PA 1..350 1..331 1290 75.7 Plus
Dper\GL26564-PA 224 GL26564-PA 23..213 132..329 465 50 Plus
Dper\GL16674-PA 447 GL16674-PA 165..439 50..328 387 35.3 Plus
Dper\GL11471-PA 436 GL11471-PA 142..395 53..308 386 36.6 Plus
Dper\GL11776-PA 236 GL11776-PA 9..220 119..331 383 41.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:02:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15110-PA 338 GA15110-PA 1..334 1..329 1290 77.7 Plus
Dpse\GA14719-PA 324 GA14719-PA 1..320 5..329 814 48.5 Plus
Dpse\GA28982-PA 271 GA28982-PA 45..260 104..329 467 46.9 Plus
Dpse\GA21232-PA 434 GA21232-PA 142..417 53..332 412 35.3 Plus
Dpse\GA28101-PA 220 GA28101-PA 26..215 138..329 399 44.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:02:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18826-PA 242 GM18826-PA 9..242 100..332 1225 96.2 Plus
Dsec\GM18824-PA 334 GM18824-PA 1..330 5..328 802 47 Plus
Dsec\GM17946-PA 293 GM17946-PA 79..289 119..330 402 39.3 Plus
Dsec\GM20674-PA 418 GM20674-PA 122..405 45..332 402 35 Plus
Dsec\GM15883-PA 292 GM15883-PA 52..277 105..331 384 38.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:02:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24781-PA 332 GD24781-PA 1..332 1..332 1746 97.6 Plus
Dsim\GD24553-PA 306 GD24553-PA 1..302 5..328 707 44.6 Plus
Dsim\GD22585-PA 292 GD22585-PA 67..288 101..330 417 38.7 Plus
Dsim\GD11645-PA 292 GD11645-PA 52..277 105..331 392 38.5 Plus
Dsim\GD11489-PA 192 GD11489-PA 6..190 143..329 366 41.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:02:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18721-PA 346 GJ18721-PA 1..344 1..331 1213 65.8 Plus
Dvir\GJ19428-PA 324 GJ19428-PA 1..320 5..328 805 48.6 Plus
Dvir\GJ12860-PA 287 GJ12860-PA 53..281 101..330 443 40.9 Plus
Dvir\GJ18368-PA 262 GJ18368-PA 59..260 120..329 433 44.3 Plus
Dvir\GJ21847-PA 226 GJ21847-PA 9..218 119..329 423 42.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:02:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25364-PA 337 GK25364-PA 4..334 3..331 1350 74.3 Plus
Dwil\GK25564-PA 336 GK25564-PA 1..332 5..328 785 46.8 Plus
Dwil\GK15365-PA 215 GK15365-PA 19..208 138..331 414 42.8 Plus
Dwil\GK19592-PA 195 GK19592-PA 2..194 138..331 406 42.6 Plus
Dwil\GK15364-PA 211 GK15364-PA 18..208 137..330 400 42.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:02:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17819-PA 332 GE17819-PA 1..330 1..330 1671 93.6 Plus
Dyak\GE15425-PA 335 GE15425-PA 1..331 5..328 799 47.5 Plus
Dyak\GE14792-PA 176 GE14792-PA 6..175 117..285 397 48.5 Plus
Dyak\GE18450-PA 249 GE18450-PA 14..245 91..330 394 35.4 Plus
Dyak\GE12242-PA 288 GE12242-PA 64..277 117..331 386 39.4 Plus

GH12692.hyp Sequence

Translation from 80 to 1078

> GH12692.hyp
MSQMLQLDALVMAMACLSTTQTDLGGGLLVPPSLGNASSSSCPVSALSGL
TTRMQSLNNEIASVKEQIGSLQEQLVDLRRAGSAPVVGLASPNALASRFL
DIEPQLLANGGAAAVPITPANCLKQQHGVVRIRPRSNVEPFFVFCDQKVR
NGGWTMVVNRYDGSEDFNRKWADYKIGFGPLTTEFFIGLDKLHQITSSDN
YELLVQLQNRKQELRYALYDHFSIGSESEQYRLNVLGDYHGDAADALRDH
TGKKFSTHDRVNDENEQNCAAQQSGAFWYGGSCNLTNPFGLYQRLLERDV
DGFKGILWRGFLNGPKGSLKIVRMMVRPRAAL*

GH12692.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:34:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG1889-PC 332 CG1889-PC 1..332 1..332 1731 100 Plus
CG1889-PA 332 CG1889-PA 1..332 1..332 1731 100 Plus
CG1889-PD 338 CG1889-PD 1..338 1..332 1714 98.2 Plus
CG1791-PC 333 CG1791-PC 1..329 5..328 779 47.2 Plus
CG1791-PA 334 CG1791-PA 1..330 5..328 773 47.2 Plus