Clone GH12731 Report

Search the DGRC for GH12731

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:127
Well:31
Vector:pOT2
Associated Gene/TranscriptGfat2-RA
Protein status:GH12731.pep: gold
Preliminary Size:2219
Sequenced Size:2532

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1345 2001-01-01 Release 2 assignment
CG1345 2002-04-09 Blastp of sequenced clone
CG12449 2003-01-01 Sim4 clustering to Release 3
CG1345 2003-01-01 Sim4 clustering to Release 3
Gfat2 2008-04-29 Release 5.5 accounting
Gfat2 2008-08-15 Release 5.9 accounting
Gfat2 2008-12-18 5.12 accounting

Clone Sequence Records

GH12731.complete Sequence

2532 bp (2532 high quality bases) assembled on 2002-04-09

GenBank Submission: AY095175

> GH12731.complete
AAATAATTGGGTTGGTTTATCAGAGAAAAACAAAAAAAATTCCAGCCAGT
GTCGCGATAAAAACACGACAATCGCATTGCAGCCGCCTCAGAAGTGTAAG
ATCAGCCTCAGCTGACCGGAAAGTTAACATTGCGACGTGGAAAACCACGA
ATCACCAGCAAATTTCAGCAAAAGCAATCGCATTTCAGAATGTGTGGCAT
ATTCGCGTACCTAAACTACTTGACGCCCAAGTCGCGACAGGAGGTCCTGG
ATCTCCTGTTGCAGGGACTGAAGCGGCTGGAGTACCGCGGCTACGACTCC
ACGGGCATAGCCATCGATGCGCTGAACTCTGGCGAGGCACAGTCCATAAT
GCTGGTGAAGCGCACCGGGAAGGTGAAGGTGCTGGAGGATGCGGTGGCGG
AGGTGTGTCGCGGCCAGGACTACTCGCTGCCCATCGACACCCACATAGGC
ATAGCACACACGCGCTGGGCCACCCACGGTGTGCCCTCCGAGGTCAACTC
GCATCCGCAGCGATCCGATGAGGATAATAGCTTTGTGGTGGTGCACAATG
GCATTATAACCAACTACAAGGATGTGAAGACGCTGCTGGAGAAGCGCGGA
TATGTATTTGAGTCCGACACGGACACGGAGGTGATTGCCAAGCTGGTACA
CCACCTGTGGCAGCAGCATCCTGGCTACACTTTCGGCGAGCTCGTGGAGC
AGGCCATTCAGCAGCTGGAGGGCGCCTTCGCCATCGCCTTCAAGTCGAAG
CACTTCCCGGGCGAGTGCGTGGCCTCCAGGCGAGGCTCACCGCTTCTGGT
GGGCATCAAGGCCAAGACCAAGCTGGCCACCGATCACATACCCATCCTGT
ACGCCAAGGCCCATCGGCCACATGGTCAGCCGCAGCAGCAGGCCTATCAA
CTATTGCCGCCCGGCGATTGCAACGCCGAGTTTCAACCGCTGGAGCGCAA
GGAAGTGGAGTACTTCTTCGCCTCGGACGCATCGGCTGTTATAGAGCACA
CGAATCGGGTGATTTACCTGGAAGATGACGACGTGGCCGCCGTCAAGAGC
GATGGCACGCTCAGCATTCATCGCCTAAACAAATCATCCGATGATCCGCA
CGCCCGCGAGATCATCACGCTGAAAATGGAGATCCAGCAGATCATGAAGG
GCAACTACGACTACTTTATGCTGAAGGAGATCTTCGAGCAGCCGGAATCC
GTGGTCAACACCATGCGCGGCAGGATGAGGTTCGATACGCAGACCGTGGT
TCTGGGTGGCATCAAGGAGTACATACCGGAGATCAAGCGCTGCCGCCGCT
TGATGCTAATTGCGTGCGGCACATCCTACCACAGTGCGGTGGCCACCAGG
CAGCTGCTGGAGGAACTGACCGAACTGCCCGTTATGGTGGAACTGGCCTC
CGATTTTCTGGACAGAAACACGCCCATTTTCCGGGACGACGTGTGCTTCT
TCATCTCCCAATCGGGCGAGACAGCGGACACCCTGATGGCGCTCAGATAC
TGCAAGCAGCGAGGAGCGCTCATCGTGGGCGTTACCAACACGGTGGGCAG
CAGCATCTGCCGCGAGTCGCACTGTGGCGTCCACATCAACGCTGGACCCG
AGATCGGAGTGGCCTCCACGAAGGCCTACACCTCCCAGTTCATTTCGCTG
GTTATGTTCGCCTTGGTCATGTCGGAGGATCGTCTCTCGCTGCAACAGCG
CCGCTTGGAGATCATCGATGGCCTATCGCAGCTGGACGAGCACATTAGGA
CTGTCCTCAAGCTGAACTCGCAGGTGCAGCAGCTTGCCAAGGAGTTGTAC
GAGCACAAGTCGCTGCTCATTATGGGCAGGGGCTTCAACTTCGCCACCTG
TTTGGAGGGCGCACTGAAAGTCAAGGAGCTGACGTACATGCACAGCGAAG
GAATCCTGGCTGGAGAACTGAAACACGGACCACTGGCCCTGGTGGACAAG
GAGATGCCCGTGCTGATGATCGTGCTGCGGGATCCGGTGTACACCAAGTG
CATGAATGCACTGCAGCAGGTGACGTCCCGCAAGGGCAGACCGATCCTAA
TCTGCGAGGAGGGCGACAACGAGACCATGTCCTTCTCCACGCGTTCGCTG
CAGATCCCGAGGACCGTGGACTGCCTGCAGGGCGTGCTCACGGTGATTCC
GCTCCAGCTGCTGTCCTACCACATCGCCGTGCTCCGCGGCTGCGACGTGG
ACTGCCCCAGGAACCTGGCCAAGTCGGTGACCGTGGAGTAGGCGCCCCAA
CTATCTGGCTAACTGGCTCGCACCGTCTCAAGAATTCCATTTTAGTATCT
GCCTGAGAAAAACAAAACAAACCCTAGCACTTAAGTTAAAATTTTCTGGT
ATTTTGTCGGATCAAAATCCGAACCCTTAACCCATTTGTGCTCCTTCTGG
CTGAAGCCACATATGTTTAACCCCTACATTTGTAGCTGTACTGACCCTTT
GTGTTGTGGACCCACTACTTTTTGTGAATGTGCAATTGAAATATAATTAT
TTCCAGTTTTTCTCTAAAAAAAAAAAAAAAAA

GH12731.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:16:15
Subject Length Description Subject Range Query Range Score Percent Strand
Gfat2-RA 2773 Gfat2-RA 113..2631 1..2519 12580 99.9 Plus
Gfat1.f 2352 Gfat1.f 1174..1613 1261..1700 865 79.7 Plus
Gfat1.d 2385 Gfat1.d 1167..1606 1261..1700 865 79.7 Plus
Gfat1.f 2352 Gfat1.f 1717..2001 1804..2088 540 79.2 Plus
Gfat1.d 2385 Gfat1.d 1710..1994 1804..2088 540 79.2 Plus
Gfat1.f 2352 Gfat1.f 1003..1133 1090..1220 370 85.4 Plus
Gfat1.d 2385 Gfat1.d 996..1126 1090..1220 370 85.4 Plus
Gfat1.f 2352 Gfat1.f 397..618 439..660 345 77 Plus
Gfat1.d 2385 Gfat1.d 303..524 439..660 345 77 Plus
Gfat1.f 2352 Gfat1.f 156..266 189..299 210 79.2 Plus
Gfat1.d 2385 Gfat1.d 62..172 189..299 210 79.2 Plus
Gfat1.f 2352 Gfat1.f 2026..2153 2113..2240 205 77.3 Plus
Gfat1.d 2385 Gfat1.d 2019..2146 2113..2240 205 77.3 Plus
Gfat1.f 2352 Gfat1.f 865..947 949..1031 190 81.9 Plus
Gfat1.d 2385 Gfat1.d 858..940 949..1031 190 81.9 Plus
Gfat1.f 2352 Gfat1.f 633..811 675..853 175 73.1 Plus
Gfat1.d 2385 Gfat1.d 539..717 675..853 175 73.1 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:14:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 24160803..24162669 1866..1 9210 99.7 Minus
chr3R 27901430 chr3R 24159955..24160602 2513..1866 3210 99.7 Minus
chr3RHet 2517486 chr3RHet 2480228..2480838 1090..1700 1150 79.2 Plus
chr3RHet 2517486 chr3RHet 2481063..2481437 1866..2240 570 76.8 Plus
chr3RHet 2517486 chr3RHet 2477243..2477657 439..853 455 74 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:47:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:14:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28337870..28339735 1866..1 9330 100 Minus
3R 32079331 3R 28337015..28337668 2519..1866 3255 99.8 Minus
3R 32079331 3R 4136484..4137094 1090..1700 1150 79.2 Plus
3R 32079331 3R 4137319..4137693 1866..2240 570 76.8 Plus
3R 32079331 3R 4133499..4133913 439..853 455 74 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:46:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 28078701..28080566 1866..1 9330 100 Minus
3R 31820162 3R 28077846..28078499 2519..1866 3255 99.8 Minus
3R 31820162 3R 3798093..3798532 1261..1700 865 79.7 Plus
3R 31820162 3R 3798757..3798979 1866..2088 425 79.3 Plus
3R 31820162 3R 3797922..3798052 1090..1220 370 85.4 Plus
3R 31820162 3R 3794937..3795158 439..660 345 77 Plus
3R 31820162 3R 3799004..3799131 2113..2240 205 77.3 Plus
3R 31820162 3R 3794659..3794759 199..299 175 78.2 Plus
3R 31820162 3R 3795173..3795351 675..853 175 73.1 Plus
3R 31820162 3R 3796745..3796806 949..1010 175 85.4 Plus
Blast to na_te.dros performed 2019-03-15 22:14:35
Subject Length Description Subject Range Query Range Score Percent Strand
transib2 2844 transib2 TRANSIB2 2844bp 318..405 2425..2512 133 65.6 Plus
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 1157..1261 1985..2089 128 64.2 Plus

GH12731.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:15:34 Download gff for GH12731.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 24159953..24160601 1867..2515 99 <- Minus
chr3R 24160803..24162669 1..1866 99   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:12:15 Download gff for GH12731.complete
Subject Subject Range Query Range Percent Splice Strand
Gfat2-RA 1..2052 190..2241 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:12:14 Download gff for GH12731.complete
Subject Subject Range Query Range Percent Splice Strand
Gfat2-RA 1..2052 190..2241 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:56:27 Download gff for GH12731.complete
Subject Subject Range Query Range Percent Splice Strand
Gfat2-RA 1..2052 190..2241 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:15:20 Download gff for GH12731.complete
Subject Subject Range Query Range Percent Splice Strand
Gfat2-RA 1..2052 190..2241 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:45:20 Download gff for GH12731.complete
Subject Subject Range Query Range Percent Splice Strand
Gfat2-RA 34..2547 1..2515 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:12:15 Download gff for GH12731.complete
Subject Subject Range Query Range Percent Splice Strand
Gfat2-RA 34..2547 1..2515 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:12:14 Download gff for GH12731.complete
Subject Subject Range Query Range Percent Splice Strand
Gfat2-RA 31..2544 1..2515 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:56:27 Download gff for GH12731.complete
Subject Subject Range Query Range Percent Splice Strand
Gfat2-RA 34..2547 1..2515 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:20 Download gff for GH12731.complete
Subject Subject Range Query Range Percent Splice Strand
Gfat2-RA 31..2544 1..2515 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:15:34 Download gff for GH12731.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28337019..28337667 1867..2515 99 <- Minus
3R 28337870..28339735 1..1866 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:15:34 Download gff for GH12731.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28337019..28337667 1867..2515 99 <- Minus
3R 28337870..28339735 1..1866 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:15:34 Download gff for GH12731.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28337019..28337667 1867..2515 99 <- Minus
3R 28337870..28339735 1..1866 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:12:14 Download gff for GH12731.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24162741..24163389 1867..2515 99 <- Minus
arm_3R 24163592..24165457 1..1866 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:28:54 Download gff for GH12731.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28077850..28078498 1867..2515 99 <- Minus
3R 28078701..28080566 1..1866 100   Minus

GH12731.pep Sequence

Translation from 189 to 2240

> GH12731.pep
MCGIFAYLNYLTPKSRQEVLDLLLQGLKRLEYRGYDSTGIAIDALNSGEA
QSIMLVKRTGKVKVLEDAVAEVCRGQDYSLPIDTHIGIAHTRWATHGVPS
EVNSHPQRSDEDNSFVVVHNGIITNYKDVKTLLEKRGYVFESDTDTEVIA
KLVHHLWQQHPGYTFGELVEQAIQQLEGAFAIAFKSKHFPGECVASRRGS
PLLVGIKAKTKLATDHIPILYAKAHRPHGQPQQQAYQLLPPGDCNAEFQP
LERKEVEYFFASDASAVIEHTNRVIYLEDDDVAAVKSDGTLSIHRLNKSS
DDPHAREIITLKMEIQQIMKGNYDYFMLKEIFEQPESVVNTMRGRMRFDT
QTVVLGGIKEYIPEIKRCRRLMLIACGTSYHSAVATRQLLEELTELPVMV
ELASDFLDRNTPIFRDDVCFFISQSGETADTLMALRYCKQRGALIVGVTN
TVGSSICRESHCGVHINAGPEIGVASTKAYTSQFISLVMFALVMSEDRLS
LQQRRLEIIDGLSQLDEHIRTVLKLNSQVQQLAKELYEHKSLLIMGRGFN
FATCLEGALKVKELTYMHSEGILAGELKHGPLALVDKEMPVLMIVLRDPV
YTKCMNALQQVTSRKGRPILICEEGDNETMSFSTRSLQIPRTVDCLQGVL
TVIPLQLLSYHIAVLRGCDVDCPRNLAKSVTVE*

GH12731.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:29:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16128-PA 684 GF16128-PA 1..684 1..683 3513 95.2 Plus
Dana\GF23135-PA 682 GF23135-PA 1..682 1..683 3051 83.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:29:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12070-PA 683 GG12070-PA 1..683 1..683 3612 98.2 Plus
Dere\GG12143-PA 673 GG12143-PA 1..673 1..683 3037 83.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:29:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17445-PA 698 GH17445-PA 1..698 1..683 3305 88.4 Plus
Dgri\GH20131-PA 694 GH20131-PA 1..694 1..683 3071 82.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:57:02
Subject Length Description Subject Range Query Range Score Percent Strand
Gfat2-PA 683 CG1345-PA 1..683 1..683 3516 100 Plus
Gfat1-PH 685 CG12449-PH 1..685 1..683 2924 82.6 Plus
Gfat1-PD 673 CG12449-PD 1..673 1..683 2916 83.3 Plus
Gfat1-PA 694 CG12449-PA 1..694 1..683 2916 81.6 Plus
Gfat1-PN 694 CG12449-PN 1..694 1..683 2916 81.6 Plus
Gfat1-PL 682 CG12449-PL 1..682 1..683 2910 82.8 Plus
Gfat1-PM 665 CG12449-PM 1..665 1..683 2904 82.9 Plus
Gfat1-PJ 643 CG12449-PJ 1..643 55..683 2709 81.9 Plus
Gfat1-PK 493 CG12449-PK 27..493 208..683 2038 84.2 Plus
Gfat1-PF 434 CG12449-PF 2..434 250..683 1996 89.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:29:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22771-PA 683 GI22771-PA 1..683 1..683 3378 91.6 Plus
Dmoj\GI24373-PA 694 GI24373-PA 1..694 1..683 3048 81.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23864-PA 678 GL23864-PA 1..678 1..683 3348 91.8 Plus
Dper\GL12297-PA 685 GL12297-PA 1..685 1..683 3048 83.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12297-PA 678 GA12297-PA 1..678 1..683 3353 91.8 Plus
Dpse\GA26267-PA 685 GA26267-PA 1..685 1..683 3048 83.2 Plus
Dpse\GA26267-PC 685 GA26267-PC 1..685 1..683 3048 83.2 Plus
Dpse\GA26267-PD 705 GA26267-PD 14..705 3..683 3027 82.1 Plus
Dpse\GA26267-PB 434 GA26267-PB 2..434 250..683 2088 89.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:29:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16296-PA 683 GM16296-PA 1..683 1..683 3656 99.6 Plus
Dsec\GM10731-PA 694 GM10731-PA 1..694 1..683 3039 81.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18034-PA 655 GD18034-PA 1..655 1..683 3460 95.3 Plus
Dsim\GD19703-PA 470 GD19703-PA 16..470 226..683 2128 86.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22773-PA 683 GJ22773-PA 1..683 1..683 3364 91.3 Plus
Dvir\GJ24380-PA 685 GJ24380-PA 1..685 1..683 3081 83.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:29:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12142-PA 687 GK12142-PA 1..687 1..683 3386 91.7 Plus
Dwil\GK12920-PA 685 GK12920-PA 1..685 1..683 3058 82.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10514-PA 683 GE10514-PA 1..683 1..683 3597 97.7 Plus
Dyak\GE25392-PA 694 GE25392-PA 1..694 1..683 3034 81.7 Plus

GH12731.hyp Sequence

Translation from 189 to 2240

> GH12731.hyp
MCGIFAYLNYLTPKSRQEVLDLLLQGLKRLEYRGYDSTGIAIDALNSGEA
QSIMLVKRTGKVKVLEDAVAEVCRGQDYSLPIDTHIGIAHTRWATHGVPS
EVNSHPQRSDEDNSFVVVHNGIITNYKDVKTLLEKRGYVFESDTDTEVIA
KLVHHLWQQHPGYTFGELVEQAIQQLEGAFAIAFKSKHFPGECVASRRGS
PLLVGIKAKTKLATDHIPILYAKAHRPHGQPQQQAYQLLPPGDCNAEFQP
LERKEVEYFFASDASAVIEHTNRVIYLEDDDVAAVKSDGTLSIHRLNKSS
DDPHAREIITLKMEIQQIMKGNYDYFMLKEIFEQPESVVNTMRGRMRFDT
QTVVLGGIKEYIPEIKRCRRLMLIACGTSYHSAVATRQLLEELTELPVMV
ELASDFLDRNTPIFRDDVCFFISQSGETADTLMALRYCKQRGALIVGVTN
TVGSSICRESHCGVHINAGPEIGVASTKAYTSQFISLVMFALVMSEDRLS
LQQRRLEIIDGLSQLDEHIRTVLKLNSQVQQLAKELYEHKSLLIMGRGFN
FATCLEGALKVKELTYMHSEGILAGELKHGPLALVDKEMPVLMIVLRDPV
YTKCMNALQQVTSRKGRPILICEEGDNETMSFSTRSLQIPRTVDCLQGVL
TVIPLQLLSYHIAVLRGCDVDCPRNLAKSVTVE*

GH12731.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:35:21
Subject Length Description Subject Range Query Range Score Percent Strand
Gfat2-PA 683 CG1345-PA 1..683 1..683 3516 100 Plus
Gfat1-PH 685 CG12449-PH 1..685 1..683 2924 82.6 Plus
Gfat1-PD 673 CG12449-PD 1..673 1..683 2916 83.3 Plus
Gfat1-PA 694 CG12449-PA 1..694 1..683 2916 81.6 Plus
Gfat1-PN 694 CG12449-PN 1..694 1..683 2916 81.6 Plus