Clone GH12838 Report

Search the DGRC for GH12838

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:128
Well:38
Vector:pOT2
Associated Gene/TranscriptNup62-RA
Protein status:GH12838.pep: gold
Preliminary Size:1340
Sequenced Size:1321

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6251 2001-01-01 Release 2 assignment
CG6251 2002-03-19 Blastp of sequenced clone
CG6251 2003-01-01 Sim4 clustering to Release 3
Nup62 2008-04-29 Release 5.5 accounting
Nup62 2008-08-15 Release 5.9 accounting
Nup62 2008-12-18 5.12 accounting

Clone Sequence Records

GH12838.complete Sequence

1321 bp (1321 high quality bases) assembled on 2002-03-19

GenBank Submission: AY094707

> GH12838.complete
CTTTTGGCGTGTTTCGTTTGATTTAGATTTATATTATTCGTCTTAAGTTT
AAGCATGGTATTCCAGTTGCCAACAACAACCGCCGCCCCGACCGGAGGCG
CAACATCGTCGTTTTCCTTCGGCCTCAGCACAGGAACACCAGCCGCAGCA
CCAGCTTCAGGAGCAGCAACCACGGCTCCCGCCACAAAAACCACATTCTC
TTTCGGAACACCGGCACCTACTGCTGGTATCGGTGGCGGAGATGCAGACA
ACAGCAAGGCGCAGGCTCCACCAGCCTTTGGATTTGGCCTGGGATCCGGG
ACTGCTTCAGCTCCCCTCACGCTGGGCACTCAAGCCGCCGCAAATCCAGC
GTCCACCACTTCTGCGACCGCGACTGGAACCTCTGCTGCTCCTCCCGCCT
TCGGAGGCTTTACGGCTCAACCAGCGGCATCTGTGGTGCCAACTATAGCA
ACCAGTGCACCCAACACCGCAGCTACCACAACTGGATTGCTGGGCGGGTC
TGGATTGGGAGCTCCCAAGACCACGGCCGCTGCGTCCACAACTCTGACTG
CAGCTCCGTCGGCCATAGCCTCCACGCAGGGAGCTGCACCGGCCCCAACT
TTAAGTACTGGTGGTGCTTTTGCCAATCTCACTACCGAAACCAAGACCAC
AGACTCATCGGCCGTTTCCACGGCATCCCAATTGTCCTACCACCAACTTG
AGGAGCATATCAACAAGTGGACTCTCGAGTTCGAGGAACAGGAAAAGGTA
TTCACCGAACAGGCCACTCAGATCAACGCATGGGACAAACTGCTCATCAG
CAACAACGGGAAGATCGTCGAGCTCAACGATGCCGTGAAAAAAGTGAAAA
CCGATCAGCAAGTGCTGGACCAGGAGCTGGAGTTTATAGCCACGCAGCAA
AAAGAGCTTGAGGACAGCCTGGGACCGCTTGAGAAGGAATTCGTTAATCT
CCCGAGGGTGGACATGGAACGCAGCCAAACCTACCTGATGGTGGAGAATC
TGGACACACAACTGAAGCAGATGTCCGAGGATCTAAAGGAGATAATAGAC
AACTTGAACGAGGCCAACAAGGGCCAGGACACCACTGATCCCATCATACA
GATCGGAAAAATCCTTAATGCCCATATGAATTCGTTGCAGTGGATCGAAT
CGCAGTCGACGAACATCAGCAAGAAGCTGGAAGACATTGGCAAGATTCAA
GACTCCCAGAAACGCGATATTTTCCGAGCTCCTTTCTAAAGATAAGTCCC
CTTAATTTGTTAACTTAAATAAAGATGGTTCCATTGTAACCACAGAAAGA
GTAAAAAAAAAAAAAAAAAAA

GH12838.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:22:22
Subject Length Description Subject Range Query Range Score Percent Strand
Nup62-RA 1452 Nup62-RA 151..1452 1..1302 6510 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 12231827..12233128 1..1302 6420 99.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:47:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16344527..16345830 1..1304 6520 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:51:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 16345726..16347029 1..1304 6520 100 Plus
Blast to na_te.dros performed on 2019-03-16 18:00:17 has no hits.

GH12838.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:00:58 Download gff for GH12838.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 12231827..12233128 1..1302 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:39:03 Download gff for GH12838.complete
Subject Subject Range Query Range Percent Splice Strand
Nup62-RA 1..1185 55..1239 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:31:14 Download gff for GH12838.complete
Subject Subject Range Query Range Percent Splice Strand
Nup62-RA 1..1185 55..1239 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:06:38 Download gff for GH12838.complete
Subject Subject Range Query Range Percent Splice Strand
Nup62-RA 1..1185 55..1239 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:04:34 Download gff for GH12838.complete
Subject Subject Range Query Range Percent Splice Strand
Nup62-RA 1..1185 55..1239 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:26:19 Download gff for GH12838.complete
Subject Subject Range Query Range Percent Splice Strand
Nup62-RA 1..1185 55..1239 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:57:19 Download gff for GH12838.complete
Subject Subject Range Query Range Percent Splice Strand
Nup62-RA 151..1452 1..1302 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:31:14 Download gff for GH12838.complete
Subject Subject Range Query Range Percent Splice Strand
Nup62-RA 151..1452 1..1302 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:06:38 Download gff for GH12838.complete
Subject Subject Range Query Range Percent Splice Strand
Nup62-RA 151..1452 1..1302 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:04:35 Download gff for GH12838.complete
Subject Subject Range Query Range Percent Splice Strand
Nup62-RA 151..1452 1..1302 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:26:19 Download gff for GH12838.complete
Subject Subject Range Query Range Percent Splice Strand
Nup62-RA 151..1452 1..1302 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:00:58 Download gff for GH12838.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16344527..16345828 1..1302 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:00:58 Download gff for GH12838.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16344527..16345828 1..1302 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:00:58 Download gff for GH12838.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16344527..16345828 1..1302 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:06:38 Download gff for GH12838.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12232032..12233333 1..1302 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:38:19 Download gff for GH12838.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16345726..16347027 1..1302 100   Plus

GH12838.pep Sequence

Translation from 54 to 1238

> GH12838.pep
MVFQLPTTTAAPTGGATSSFSFGLSTGTPAAAPASGAATTAPATKTTFSF
GTPAPTAGIGGGDADNSKAQAPPAFGFGLGSGTASAPLTLGTQAAANPAS
TTSATATGTSAAPPAFGGFTAQPAASVVPTIATSAPNTAATTTGLLGGSG
LGAPKTTAAASTTLTAAPSAIASTQGAAPAPTLSTGGAFANLTTETKTTD
SSAVSTASQLSYHQLEEHINKWTLEFEEQEKVFTEQATQINAWDKLLISN
NGKIVELNDAVKKVKTDQQVLDQELEFIATQQKELEDSLGPLEKEFVNLP
RVDMERSQTYLMVENLDTQLKQMSEDLKEIIDNLNEANKGQDTTDPIIQI
GKILNAHMNSLQWIESQSTNISKKLEDIGKIQDSQKRDIFRAPF*

GH12838.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:29:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13594-PA 390 GF13594-PA 1..390 1..394 1315 77.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:29:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20600-PA 390 GG20600-PA 1..390 1..394 1591 89.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:29:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19964-PA 394 GH19964-PA 1..394 1..394 1001 60.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:56
Subject Length Description Subject Range Query Range Score Percent Strand
Nup62-PB 394 CG6251-PB 1..394 1..394 1978 100 Plus
Nup62-PA 394 CG6251-PA 1..394 1..394 1978 100 Plus
Nup153-PC 1883 CG4453-PC 1268..1494 3..210 196 32.5 Plus
Nup153-PA 1883 CG4453-PA 1268..1494 3..210 196 32.5 Plus
Nup153-PD 1929 CG4453-PD 1268..1494 3..210 196 32.5 Plus
CG46026-PA 666 CG46026-PA 170..385 5..207 187 32.3 Plus
Nup58-PA 546 CG7360-PA 26..398 6..343 184 27.1 Plus
CG46026-PA 666 CG46026-PA 437..640 5..207 174 29.4 Plus
CG14712-PA 1266 CG14712-PA 837..1023 7..206 174 33.3 Plus
GlyT-PB 1188 CG5549-PB 1019..1181 12..178 172 32.9 Plus
Nup54-PA 610 CG8831-PA 13..173 7..150 166 33.9 Plus
CG46026-PA 666 CG46026-PA 142..351 7..207 165 27.8 Plus
CG46026-PA 666 CG46026-PA 123..317 4..207 160 28.4 Plus
CG46026-PA 666 CG46026-PA 267..487 5..207 158 28.1 Plus
CG46026-PA 666 CG46026-PA 399..589 7..207 158 29.9 Plus
wrd-PA 951 CG7913-PA 141..330 6..208 158 27.8 Plus
wrd-PB 984 CG7913-PB 141..330 6..208 158 27.8 Plus
CG32642-PE 373 CG32642-PE 188..360 29..208 156 28.6 Plus
CG32642-PB 373 CG32642-PB 188..360 29..208 156 28.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:29:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19922-PA 404 GI19922-PA 1..404 1..394 1051 61.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:29:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10733-PA 379 GL10733-PA 1..378 1..394 1205 67.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:29:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19470-PA 379 GA19470-PA 1..378 1..394 1203 67.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:29:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21692-PA 393 GM21692-PA 1..393 1..394 1591 95.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:29:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11188-PA 364 GD11188-PA 1..364 1..394 1395 87.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:29:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15090-PA 388 GJ15090-PA 1..388 1..394 1103 65.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21694-PA 377 GK21694-PA 1..377 1..394 1030 63.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:29:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11786-PA 393 GE11786-PA 1..393 1..394 1578 89.4 Plus

GH12838.hyp Sequence

Translation from 54 to 1238

> GH12838.hyp
MVFQLPTTTAAPTGGATSSFSFGLSTGTPAAAPASGAATTAPATKTTFSF
GTPAPTAGIGGGDADNSKAQAPPAFGFGLGSGTASAPLTLGTQAAANPAS
TTSATATGTSAAPPAFGGFTAQPAASVVPTIATSAPNTAATTTGLLGGSG
LGAPKTTAAASTTLTAAPSAIASTQGAAPAPTLSTGGAFANLTTETKTTD
SSAVSTASQLSYHQLEEHINKWTLEFEEQEKVFTEQATQINAWDKLLISN
NGKIVELNDAVKKVKTDQQVLDQELEFIATQQKELEDSLGPLEKEFVNLP
RVDMERSQTYLMVENLDTQLKQMSEDLKEIIDNLNEANKGQDTTDPIIQI
GKILNAHMNSLQWIESQSTNISKKLEDIGKIQDSQKRDIFRAPF*

GH12838.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:35:58
Subject Length Description Subject Range Query Range Score Percent Strand
Nup62-PB 394 CG6251-PB 1..394 1..394 1978 100 Plus
Nup62-PA 394 CG6251-PA 1..394 1..394 1978 100 Plus
Nup153-PC 1883 CG4453-PC 1268..1494 3..210 196 32.5 Plus
Nup153-PA 1883 CG4453-PA 1268..1494 3..210 196 32.5 Plus
Nup153-PD 1929 CG4453-PD 1268..1494 3..210 196 32.5 Plus