BDGP Sequence Production Resources |
Search the DGRC for GH12838
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 128 |
Well: | 38 |
Vector: | pOT2 |
Associated Gene/Transcript | Nup62-RA |
Protein status: | GH12838.pep: gold |
Preliminary Size: | 1340 |
Sequenced Size: | 1321 |
Gene | Date | Evidence |
---|---|---|
CG6251 | 2001-01-01 | Release 2 assignment |
CG6251 | 2002-03-19 | Blastp of sequenced clone |
CG6251 | 2003-01-01 | Sim4 clustering to Release 3 |
Nup62 | 2008-04-29 | Release 5.5 accounting |
Nup62 | 2008-08-15 | Release 5.9 accounting |
Nup62 | 2008-12-18 | 5.12 accounting |
1321 bp (1321 high quality bases) assembled on 2002-03-19
GenBank Submission: AY094707
> GH12838.complete CTTTTGGCGTGTTTCGTTTGATTTAGATTTATATTATTCGTCTTAAGTTT AAGCATGGTATTCCAGTTGCCAACAACAACCGCCGCCCCGACCGGAGGCG CAACATCGTCGTTTTCCTTCGGCCTCAGCACAGGAACACCAGCCGCAGCA CCAGCTTCAGGAGCAGCAACCACGGCTCCCGCCACAAAAACCACATTCTC TTTCGGAACACCGGCACCTACTGCTGGTATCGGTGGCGGAGATGCAGACA ACAGCAAGGCGCAGGCTCCACCAGCCTTTGGATTTGGCCTGGGATCCGGG ACTGCTTCAGCTCCCCTCACGCTGGGCACTCAAGCCGCCGCAAATCCAGC GTCCACCACTTCTGCGACCGCGACTGGAACCTCTGCTGCTCCTCCCGCCT TCGGAGGCTTTACGGCTCAACCAGCGGCATCTGTGGTGCCAACTATAGCA ACCAGTGCACCCAACACCGCAGCTACCACAACTGGATTGCTGGGCGGGTC TGGATTGGGAGCTCCCAAGACCACGGCCGCTGCGTCCACAACTCTGACTG CAGCTCCGTCGGCCATAGCCTCCACGCAGGGAGCTGCACCGGCCCCAACT TTAAGTACTGGTGGTGCTTTTGCCAATCTCACTACCGAAACCAAGACCAC AGACTCATCGGCCGTTTCCACGGCATCCCAATTGTCCTACCACCAACTTG AGGAGCATATCAACAAGTGGACTCTCGAGTTCGAGGAACAGGAAAAGGTA TTCACCGAACAGGCCACTCAGATCAACGCATGGGACAAACTGCTCATCAG CAACAACGGGAAGATCGTCGAGCTCAACGATGCCGTGAAAAAAGTGAAAA CCGATCAGCAAGTGCTGGACCAGGAGCTGGAGTTTATAGCCACGCAGCAA AAAGAGCTTGAGGACAGCCTGGGACCGCTTGAGAAGGAATTCGTTAATCT CCCGAGGGTGGACATGGAACGCAGCCAAACCTACCTGATGGTGGAGAATC TGGACACACAACTGAAGCAGATGTCCGAGGATCTAAAGGAGATAATAGAC AACTTGAACGAGGCCAACAAGGGCCAGGACACCACTGATCCCATCATACA GATCGGAAAAATCCTTAATGCCCATATGAATTCGTTGCAGTGGATCGAAT CGCAGTCGACGAACATCAGCAAGAAGCTGGAAGACATTGGCAAGATTCAA GACTCCCAGAAACGCGATATTTTCCGAGCTCCTTTCTAAAGATAAGTCCC CTTAATTTGTTAACTTAAATAAAGATGGTTCCATTGTAACCACAGAAAGA GTAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Nup62-RA | 1452 | Nup62-RA | 151..1452 | 1..1302 | 6510 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 12231827..12233128 | 1..1302 | 6420 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 16344527..16345830 | 1..1304 | 6520 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 16345726..16347029 | 1..1304 | 6520 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 12231827..12233128 | 1..1302 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nup62-RA | 1..1185 | 55..1239 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nup62-RA | 1..1185 | 55..1239 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nup62-RA | 1..1185 | 55..1239 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nup62-RA | 1..1185 | 55..1239 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nup62-RA | 1..1185 | 55..1239 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nup62-RA | 151..1452 | 1..1302 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nup62-RA | 151..1452 | 1..1302 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nup62-RA | 151..1452 | 1..1302 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nup62-RA | 151..1452 | 1..1302 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nup62-RA | 151..1452 | 1..1302 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 16344527..16345828 | 1..1302 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 16344527..16345828 | 1..1302 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 16344527..16345828 | 1..1302 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 12232032..12233333 | 1..1302 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 16345726..16347027 | 1..1302 | 100 | Plus |
Translation from 54 to 1238
> GH12838.pep MVFQLPTTTAAPTGGATSSFSFGLSTGTPAAAPASGAATTAPATKTTFSF GTPAPTAGIGGGDADNSKAQAPPAFGFGLGSGTASAPLTLGTQAAANPAS TTSATATGTSAAPPAFGGFTAQPAASVVPTIATSAPNTAATTTGLLGGSG LGAPKTTAAASTTLTAAPSAIASTQGAAPAPTLSTGGAFANLTTETKTTD SSAVSTASQLSYHQLEEHINKWTLEFEEQEKVFTEQATQINAWDKLLISN NGKIVELNDAVKKVKTDQQVLDQELEFIATQQKELEDSLGPLEKEFVNLP RVDMERSQTYLMVENLDTQLKQMSEDLKEIIDNLNEANKGQDTTDPIIQI GKILNAHMNSLQWIESQSTNISKKLEDIGKIQDSQKRDIFRAPF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13594-PA | 390 | GF13594-PA | 1..390 | 1..394 | 1315 | 77.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20600-PA | 390 | GG20600-PA | 1..390 | 1..394 | 1591 | 89.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19964-PA | 394 | GH19964-PA | 1..394 | 1..394 | 1001 | 60.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Nup62-PB | 394 | CG6251-PB | 1..394 | 1..394 | 1978 | 100 | Plus |
Nup62-PA | 394 | CG6251-PA | 1..394 | 1..394 | 1978 | 100 | Plus |
Nup153-PC | 1883 | CG4453-PC | 1268..1494 | 3..210 | 196 | 32.5 | Plus |
Nup153-PA | 1883 | CG4453-PA | 1268..1494 | 3..210 | 196 | 32.5 | Plus |
Nup153-PD | 1929 | CG4453-PD | 1268..1494 | 3..210 | 196 | 32.5 | Plus |
CG46026-PA | 666 | CG46026-PA | 170..385 | 5..207 | 187 | 32.3 | Plus |
Nup58-PA | 546 | CG7360-PA | 26..398 | 6..343 | 184 | 27.1 | Plus |
CG46026-PA | 666 | CG46026-PA | 437..640 | 5..207 | 174 | 29.4 | Plus |
CG14712-PA | 1266 | CG14712-PA | 837..1023 | 7..206 | 174 | 33.3 | Plus |
GlyT-PB | 1188 | CG5549-PB | 1019..1181 | 12..178 | 172 | 32.9 | Plus |
Nup54-PA | 610 | CG8831-PA | 13..173 | 7..150 | 166 | 33.9 | Plus |
CG46026-PA | 666 | CG46026-PA | 142..351 | 7..207 | 165 | 27.8 | Plus |
CG46026-PA | 666 | CG46026-PA | 123..317 | 4..207 | 160 | 28.4 | Plus |
CG46026-PA | 666 | CG46026-PA | 267..487 | 5..207 | 158 | 28.1 | Plus |
CG46026-PA | 666 | CG46026-PA | 399..589 | 7..207 | 158 | 29.9 | Plus |
wrd-PA | 951 | CG7913-PA | 141..330 | 6..208 | 158 | 27.8 | Plus |
wrd-PB | 984 | CG7913-PB | 141..330 | 6..208 | 158 | 27.8 | Plus |
CG32642-PE | 373 | CG32642-PE | 188..360 | 29..208 | 156 | 28.6 | Plus |
CG32642-PB | 373 | CG32642-PB | 188..360 | 29..208 | 156 | 28.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19922-PA | 404 | GI19922-PA | 1..404 | 1..394 | 1051 | 61.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10733-PA | 379 | GL10733-PA | 1..378 | 1..394 | 1205 | 67.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19470-PA | 379 | GA19470-PA | 1..378 | 1..394 | 1203 | 67.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21692-PA | 393 | GM21692-PA | 1..393 | 1..394 | 1591 | 95.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11188-PA | 364 | GD11188-PA | 1..364 | 1..394 | 1395 | 87.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15090-PA | 388 | GJ15090-PA | 1..388 | 1..394 | 1103 | 65.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21694-PA | 377 | GK21694-PA | 1..377 | 1..394 | 1030 | 63.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE11786-PA | 393 | GE11786-PA | 1..393 | 1..394 | 1578 | 89.4 | Plus |
Translation from 54 to 1238
> GH12838.hyp MVFQLPTTTAAPTGGATSSFSFGLSTGTPAAAPASGAATTAPATKTTFSF GTPAPTAGIGGGDADNSKAQAPPAFGFGLGSGTASAPLTLGTQAAANPAS TTSATATGTSAAPPAFGGFTAQPAASVVPTIATSAPNTAATTTGLLGGSG LGAPKTTAAASTTLTAAPSAIASTQGAAPAPTLSTGGAFANLTTETKTTD SSAVSTASQLSYHQLEEHINKWTLEFEEQEKVFTEQATQINAWDKLLISN NGKIVELNDAVKKVKTDQQVLDQELEFIATQQKELEDSLGPLEKEFVNLP RVDMERSQTYLMVENLDTQLKQMSEDLKEIIDNLNEANKGQDTTDPIIQI GKILNAHMNSLQWIESQSTNISKKLEDIGKIQDSQKRDIFRAPF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Nup62-PB | 394 | CG6251-PB | 1..394 | 1..394 | 1978 | 100 | Plus |
Nup62-PA | 394 | CG6251-PA | 1..394 | 1..394 | 1978 | 100 | Plus |
Nup153-PC | 1883 | CG4453-PC | 1268..1494 | 3..210 | 196 | 32.5 | Plus |
Nup153-PA | 1883 | CG4453-PA | 1268..1494 | 3..210 | 196 | 32.5 | Plus |
Nup153-PD | 1929 | CG4453-PD | 1268..1494 | 3..210 | 196 | 32.5 | Plus |