GH12850.complete Sequence
2320 bp (2320 high quality bases) assembled on 2001-09-19
GenBank Submission: AY060285
> GH12850.complete
CTAGATAGCCAGCCGATCCCTTAAGTGTTTGGAATATCTGACAGTACAAC
TGAAAGAATCGATCAAACTGAGAAAGGTTTGGCAAAGCCCTGCCAGTTAA
ATATCGACAGAGTGAAAACTGCACGCCGGAAAAACAGCTCGAGGCAATCA
AATGCTGCCCCCTACTCTTTGCTTTTCCAGCTTTTCCTGCTGTTTTTGCT
CGTTTGTTAGCACGTTGGAAAAGCTTCGCTTGATAAGCATAAGAAATGGA
AGGCAACTAACAAGTGCGTTGGCTTGAGCGTGTGTGGGATTTTGGGTGTG
TGTGTGTGTGTGTGTGTGTGGCACAACGAACGACTGCACATAACAAGCTT
CCATTCTATCCCATTTATGCTGCTCCTTGGCAGCTGATAGGACAAACCGG
AGGCGCTATAACCGTAGCTGAACTCTGTTGCACTAGTCAAACTTAAGCCG
GAAATTCACTAAACATGGAACATTCACTTGCCTGCAATTGTATTTACTGC
TGGAGAAAACGAAAACAATTGCCGCAAATATGGCAAATGGCAATTGAAAA
ACAAAAGTCCCTGGCGAAACGAGACCAGAAATCCGTTCGCCTGCTGCTTT
CACACTTTCCAGCCACGCAGGACAAAAGGCCAAAAAAGCGGCAGCAGGGA
CGTGAGTGCTGAAAAAAAAGCCAAGGATGCAGCTGCACACAGAAGAAATG
AAAAAAATGGGGACGGAGTGTGGGAAAATGCACAAAATTGGCTGTGAAAT
GAACGAGATGAGGCGGCTATTGTTAACATCTGAGGGAATACAAGGGTAAT
AGCTATGACAGCAGCGAAACTGAGGTCAACACTTGGCTTTGCGTGCGCAA
AAGGCAGGCCAAAGTCAAACGGAAATCTGCATAAGACCCTCCAGTTGCGA
TTGACAGTCCTTGAGATGTTTCCACTCAGTTTCCCATGTCTGTGGCCTCT
GACAGAACCTGAACAGCAAACCGAGCACCAAAACATCGAACAGCTGGGTG
GGCAATTAAAAGGCATTCCAGAGGTCAGCATAAATTAGTCAAATGCGTGT
ATGCAAATGCCATTTGTGCGATTAACAATGCAGGCTTCAAGACCACTGAG
CACACTACGCACAAAAGACACACATTAAAGTTATCTGAAATTATATGGCA
AAAGGTAACACATGGATATATATATACAATATATGTATATATATTGCCGT
ACCTAGGGGAACTGACCTGGCTGCCTGGCAACTTTCCCATAATTTACACT
TTATCGAACGATAACAAACAACCTGCATAATGTATGGCTCTTGGTTTTGT
CCTGGACTCGTAAGGAATGGCAGCTCACCTGTGGGTGTGGGGTTGTGGGT
GGCATTCTGGCATTGACTGGCGCTTGAGGTTACCAAAAGGGTCCTGCGTG
AGATCCTTCTCGCCTTCTAAACAAAATTCCCGTATGCAAAATGTGCCGTC
AATCAAAAATGCCACAACTGCAACTCGTTGCACCTTTGGGCCAAGTCTAC
GGAGGACCTGTTAACCCACATTTACCAGGCGATTTGGCGACCTGGGAGAC
AAAAACCATTTACATTCGAAAACCATAAAAGATACAAACGCCGACCTTCT
CCGCTCGTTTGGGGAATATGGCATAATAAAATTTTAATTCGTTGCGATTG
ATGGTGGCCCCTCAAACGTAACCACCACATCCATATACGTATACATATAT
ACAAGCATCGATGGTTGATTTCCCAGAGCCGAGGGATACAACCAATACAT
TACATTTTATAACCCCAGCTAATTTGCATATATGCAGGCATACGTACGAC
CATAGAAATACGAGTATATGTGTCTGCGTAACATTGATTGGATTTGTTTG
ACTTTCACACTGCCTGATGGCATCGCATCGAAGATGGCTGGGGTTTTTCG
GCCTGGGATGGTGAAAGGTGGTTTTTAGGGCTTTCTGATGGTTTTTAGGC
GGTGGTGCGCTGGAAGGCTAAGTGCCTGACATTTACTAAATGGCAAAGGG
AACGGCTTCACAGGCTTTTGCTGGTTATACTTTCCCCATTTGCTCAACCG
AAAATTGCACTTGCCTCGTTAGTCGAAATGGCTGGGTAATTACGAGTGGT
CGGAATTGCCTCCCAACAACTCATCGCCTACTTGGCTTATAACCTTCAAA
GTTGCAGCTAACAAAGAAAAACTGGTCATGCCTTTTGGTATCCTTTAAAT
AGATAATGAACTTACAAGTTTGCACTTAGTAGATTGTTCAAGTATCTGTT
GATTATTATAATAGAGCTCAAATAAAGGTAATTCATACAATCAATCAGTA
AAAAAAAAAAAAAAAAAAAA
GH12850.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:23:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30121-RA | 2303 | CG30121-RA | 1..2300 | 1..2300 | 11500 | 100 | Plus |
CG33998-RA | 652 | CG33998-RA | 580..652 | 2300..2228 | 365 | 100 | Minus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:15:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2R | 21145070 | chr2R | 14626237..14628076 | 2299..461 | 8940 | 99.2 | Minus |
chr2R | 21145070 | chr2R | 14628303..14628764 | 460..1 | 2230 | 99.4 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:47:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:15:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18739130..18740969 | 2300..461 | 9200 | 100 | Minus |
2R | 25286936 | 2R | 18741199..18741658 | 460..1 | 2300 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:45:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25260384 | 2R | 18740329..18742168 | 2300..461 | 9200 | 100 | Minus |
2R | 25260384 | 2R | 18742398..18742857 | 460..1 | 2300 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-16 10:15:29 has no hits.
GH12850.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:16:08 Download gff for
GH12850.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2R | 14626237..14628076 | 461..2299 | 99 | <- | Minus |
chr2R | 14628303..14628764 | 1..460 | 94 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:39:04 Download gff for
GH12850.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30121-RA | 1..234 | 805..1038 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:07:56 Download gff for
GH12850.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30121-RA | 1..234 | 805..1038 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:38:43 Download gff for
GH12850.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30121-RA | 1..234 | 805..1038 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:58:11 Download gff for
GH12850.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30121-RA | 1..2299 | 1..2299 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:07:56 Download gff for
GH12850.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30121-RA | 1..2299 | 1..2299 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:38:43 Download gff for
GH12850.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30121-RA | 1..2299 | 1..2299 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:16:08 Download gff for
GH12850.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18739131..18740969 | 461..2299 | 100 | <- | Minus |
2R | 18741199..18741658 | 1..460 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:16:08 Download gff for
GH12850.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18739131..18740969 | 461..2299 | 100 | <- | Minus |
2R | 18741199..18741658 | 1..460 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:16:08 Download gff for
GH12850.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18739131..18740969 | 461..2299 | 100 | <- | Minus |
2R | 18741199..18741658 | 1..460 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:00 Download gff for
GH12850.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14626636..14628474 | 461..2299 | 100 | <- | Minus |
arm_2R | 14628704..14629163 | 1..460 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:00 Download gff for
GH12850.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14626636..14628474 | 461..2299 | 100 | <- | Minus |
arm_2R | 14628704..14629163 | 1..460 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:00 Download gff for
GH12850.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14626636..14628474 | 461..2299 | 100 | <- | Minus |
arm_2R | 14628704..14629163 | 1..460 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:16:06 Download gff for
GH12850.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18740330..18742168 | 461..2299 | 100 | <- | Minus |
2R | 18742398..18742857 | 1..460 | 100 | | Minus |
GH12850.hyp Sequence
Translation from 804 to 1037
> GH12850.hyp
MTAAKLRSTLGFACAKGRPKSNGNLHKTLQLRLTVLEMFPLSFPCLWPLT
EPEQQTEHQNIEQLGGQLKGIPEVSIN*
Sequence GH12850.hyp has no blast hits.
GH12850.pep Sequence
Translation from 804 to 1037
> GH12850.pep
MTAAKLRSTLGFACAKGRPKSNGNLHKTLQLRLTVLEMFPLSFPCLWPLT
EPEQQTEHQNIEQLGGQLKGIPEVSIN*
GH12850.pep Blast Records
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:01:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE18115-PA | 113 | GE18115-PA | 1..81 | 1..77 | 273 | 69 | Plus |