Clone GH12946 Report

Search the DGRC for GH12946

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:129
Well:46
Vector:pOT2
Associated Gene/TranscriptCG32548-RC
Protein status:GH12946.pep: gold
Preliminary Size:1383
Sequenced Size:1407

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6306 2001-01-01 Release 2 assignment
CG32548 2001-11-12 Blastp of sequenced clone
CG32548 2003-01-01 Sim4 clustering to Release 3
CG32548 2008-04-29 Release 5.5 accounting
CG32548 2008-08-15 Release 5.9 accounting
CG32548 2008-12-18 5.12 accounting

Clone Sequence Records

GH12946.complete Sequence

1407 bp (1407 high quality bases) assembled on 2001-11-12

GenBank Submission: AY069115

> GH12946.complete
CTCAGTCGGTTCAGATCGGTTCGTTTTACAATTTTTCCCGCTACAGACTT
CGTAAACAAATTGTATCAAAATCTGAATTTGAAAATCAATTTTTGGCTAT
CCACACTCGAGCTACACAACCTCTCGTCAAAACTTTTAAGTTTACATCGC
GACAAACGGAACAACAGGGAATCATGAGATCCAGCAAAGTTCGTGGGGGC
AACGCCAGTCGATTGGCTGACGCGGAGGGACAGTGGGGAAAGGGATGCCT
GGGTTCCCAGCACTCAATTATCAAGAATCACGGGCGTGGCCTTTCATCCC
AAACTCCCACGCAATTTGGTGGATTCTCGCCGTCGGGACAGCAGTATCCT
GCCGTGTACTCGCAGCCAGGATTCCGGGCCGATGGTAAGCTGAAGGTCAC
GCCCAACTCGCTGCTCCAGCAGCAGCAACAGCAGCAACAGCAGCAACAGC
AGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCTCCTGGCGCAG
CAGCAGCAGCAACTCCTGGCCGCCACATCGCCGCAGGTAGCAGCTGCATC
CGGACCAGGAGTGGGCGTTAGCGGTGGCGTGGTCAACATGCCCAGCTATG
CGGACCAGATGCACGCCGCCTTCCTCGATTATCAGCGCCAACGAGCCGAG
TTCGAGCAGCAGCAGCAGCACCTGCTGCAGAAGCTCTACCACTACTATCC
CGATGTATCCGGCGGCCTAACATCACCGGCTCATCAGATTCAACCCCAAA
CCCCCCAGATAGCTGCTCCCGCCGATGTGGGAGGCGCTCCGGCGGGCGTG
GCAGCACAGAACGCAGCTGGCCGCTTCGCCTACCGTCGGCCGCAGTTCAG
CAACAATGGCCTGCAGCCCGAGCGCCTTGCATCCGGATCCATTGTGCCCG
GAGGTCCAGTAAGAGGAGGTCCAGTTGGAGTCATCCCGGGAGGAGTGATC
GGATCAGCGCCTTTGCGCTCCAACAGTCTGGGAGGGGGAGCAAGTGGAGA
CTTCTACTCCACGCAACAGCACATGGGCTTCATGCAGCAGCAGCAGCAGG
ACGTGCTCCGTGACCAGCAGCAGTCGGTGGCCCATCAGTTCGCCACCAGC
CAGTTGGCGCCCACCACCCGCCAGAGCTATGGGATGGCCGTTCCCATGTC
CTCCGTGCTGGGATCCCCCACCTACCAGCAATCGCCGGACGTCTCTCATG
TGAGCTTCTCAAGCGGCAATCTCAACTACAGCTTCTAATGATGATGAGCT
GTTATTCCAAGGACTTCCAAAACTAGTATTTTCATTTTTTTTTCACACAC
CTTTTTTTTTGCGTAAATTTTCGTGGTATTTGATAAGAGGAATTGTTTAG
GGCAAGCAAGAATAAATTTTGTAAGTGATGATAAAAAAAAAAAAAAAAAA
AAAAAAA

GH12946.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:56:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG32548-RC 1509 CG32548-RC 123..1506 1..1384 6920 100 Plus
CG32548-RB 1684 CG32548-RB 555..1639 300..1384 5425 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:46:01
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 18324886..18325969 1382..300 5370 99.9 Minus
chrX 22417052 chrX 18326170..18326468 299..1 1495 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:48:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:45:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18435717..18436801 1384..300 5425 100 Minus
X 23542271 X 18437002..18437300 299..1 1495 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:21:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 18443815..18444899 1384..300 5425 100 Minus
X 23527363 X 18445100..18445398 299..1 1495 100 Minus
Blast to na_te.dros performed 2019-03-15 15:45:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6814..7102 410..686 298 59.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2409..2539 417..548 252 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6659..6924 394..673 203 56.8 Plus

GH12946.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:46:50 Download gff for GH12946.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 18324886..18325757 512..1382 99 == Minus
chrX 18325853..18325969 300..416 100 <- Minus
chrX 18326170..18326468 1..299 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:39:18 Download gff for GH12946.complete
Subject Subject Range Query Range Percent Splice Strand
CG32548-RC 1..1065 174..1238 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:27:49 Download gff for GH12946.complete
Subject Subject Range Query Range Percent Splice Strand
CG32548-RC 1..1065 174..1238 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:39:30 Download gff for GH12946.complete
Subject Subject Range Query Range Percent Splice Strand
CG32548-RC 1..1065 174..1238 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:55:38 Download gff for GH12946.complete
Subject Subject Range Query Range Percent Splice Strand
CG32548-RC 1..1065 174..1238 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:15:09 Download gff for GH12946.complete
Subject Subject Range Query Range Percent Splice Strand
CG32548-RC 1..1065 174..1238 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:05:02 Download gff for GH12946.complete
Subject Subject Range Query Range Percent Splice Strand
CG32548-RC 1..1382 1..1382 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:27:49 Download gff for GH12946.complete
Subject Subject Range Query Range Percent Splice Strand
CG32548-RC 1..1382 1..1382 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:39:30 Download gff for GH12946.complete
Subject Subject Range Query Range Percent Splice Strand
CG32548-RC 1..1382 1..1382 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:55:39 Download gff for GH12946.complete
Subject Subject Range Query Range Percent Splice Strand
CG32548-RC 1..1382 1..1382 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:15:09 Download gff for GH12946.complete
Subject Subject Range Query Range Percent Splice Strand
CG32548-RC 1..1382 1..1382 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:46:50 Download gff for GH12946.complete
Subject Subject Range Query Range Percent Splice Strand
X 18435719..18436801 300..1382 100 <- Minus
X 18437002..18437300 1..299 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:46:50 Download gff for GH12946.complete
Subject Subject Range Query Range Percent Splice Strand
X 18435719..18436801 300..1382 100 <- Minus
X 18437002..18437300 1..299 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:46:50 Download gff for GH12946.complete
Subject Subject Range Query Range Percent Splice Strand
X 18435719..18436801 300..1382 100 <- Minus
X 18437002..18437300 1..299 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:39:30 Download gff for GH12946.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18329752..18330834 300..1382 100 <- Minus
arm_X 18331035..18331333 1..299 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:31:28 Download gff for GH12946.complete
Subject Subject Range Query Range Percent Splice Strand
X 18445100..18445398 1..299 100   Minus
X 18443817..18444899 300..1382 100 <- Minus

GH12946.hyp Sequence

Translation from 2 to 1237

> GH12946.hyp
QSVQIGSFYNFSRYRLRKQIVSKSEFENQFLAIHTRATQPLVKTFKFTSR
QTEQQGIMRSSKVRGGNASRLADAEGQWGKGCLGSQHSIIKNHGRGLSSQ
TPTQFGGFSPSGQQYPAVYSQPGFRADGKLKVTPNSLLQQQQQQQQQQQQ
QQQQQQQQQQQQLLAQQQQQLLAATSPQVAAASGPGVGVSGGVVNMPSYA
DQMHAAFLDYQRQRAEFEQQQQHLLQKLYHYYPDVSGGLTSPAHQIQPQT
PQIAAPADVGGAPAGVAAQNAAGRFAYRRPQFSNNGLQPERLASGSIVPG
GPVRGGPVGVIPGGVIGSAPLRSNSLGGGASGDFYSTQQHMGFMQQQQQD
VLRDQQQSVAHQFATSQLAPTTRQSYGMAVPMSSVLGSPTYQQSPDVSHV
SFSSGNLNYSF*

GH12946.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG32548-PC 354 CG32548-PC 1..354 58..411 1833 100 Plus
CG32548-PB 385 CG32548-PB 74..385 100..411 1612 100 Plus
ptip-PA 2294 CG32133-PA 1158..1367 137..359 171 32.9 Plus
N-PB 2703 CG3936-PB 2455..2647 42..247 169 29.2 Plus
N-PA 2703 CG3936-PA 2455..2647 42..247 169 29.2 Plus
ptip-PA 2294 CG32133-PA 229..346 139..257 167 40.5 Plus
ptip-PA 2294 CG32133-PA 846..988 109..252 165 37.7 Plus

GH12946.pep Sequence

Translation from 173 to 1237

> GH12946.pep
MRSSKVRGGNASRLADAEGQWGKGCLGSQHSIIKNHGRGLSSQTPTQFGG
FSPSGQQYPAVYSQPGFRADGKLKVTPNSLLQQQQQQQQQQQQQQQQQQQ
QQQQQLLAQQQQQLLAATSPQVAAASGPGVGVSGGVVNMPSYADQMHAAF
LDYQRQRAEFEQQQQHLLQKLYHYYPDVSGGLTSPAHQIQPQTPQIAAPA
DVGGAPAGVAAQNAAGRFAYRRPQFSNNGLQPERLASGSIVPGGPVRGGP
VGVIPGGVIGSAPLRSNSLGGGASGDFYSTQQHMGFMQQQQQDVLRDQQQ
SVAHQFATSQLAPTTRQSYGMAVPMSSVLGSPTYQQSPDVSHVSFSSGNL
NYSF*

GH12946.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22507-PA 382 GF22507-PA 146..382 130..354 555 60.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:34:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18125-PA 332 GG18125-PA 1..332 1..354 1082 72.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG32548-PC 354 CG32548-PC 1..354 1..354 1833 100 Plus
CG32548-PB 385 CG32548-PB 74..385 43..354 1612 100 Plus
Ptip-PA 2294 CG32133-PA 1158..1367 80..302 171 32.9 Plus
Ptip-PA 2294 CG32133-PA 229..346 82..200 167 40.5 Plus
mam-PD 1594 CG8118-PD 774..1047 56..300 167 29.6 Plus
mam-PB 1594 CG8118-PB 774..1047 56..300 167 29.6 Plus
mam-PA 1594 CG8118-PA 774..1047 56..300 167 29.6 Plus
Ptip-PA 2294 CG32133-PA 846..988 52..195 165 37.7 Plus
Smr-PF 3601 CG4013-PF 64..395 56..337 165 24.9 Plus
Smr-PE 3601 CG4013-PE 64..395 56..337 165 24.9 Plus
Smr-PD 3601 CG4013-PD 64..395 56..337 165 24.9 Plus
ec-PA 1712 CG2904-PA 1417..1655 56..275 164 29 Plus
ec-PB 1746 CG2904-PB 1451..1689 56..275 164 29 Plus
ec-PC 1765 CG2904-PC 1470..1708 56..275 164 29 Plus
hdc-PC 1080 CG15532-PC 732..819 82..169 163 49.4 Plus
CG10543-PD 1631 CG10543-PD 1175..1395 78..314 162 29.2 Plus
CG10543-PE 1634 CG10543-PE 1178..1398 78..314 162 29.2 Plus
CG10543-PA 1634 CG10543-PA 1178..1398 78..314 162 29.2 Plus
CG10543-PF 1635 CG10543-PF 1179..1399 78..314 162 29.2 Plus
N-PB 2703 CG3936-PB 2502..2647 44..190 162 34 Plus
N-PA 2703 CG3936-PA 2502..2647 44..190 162 34 Plus
corto-PD 550 CG2530-PD 23..267 79..303 160 29.6 Plus
corto-PC 550 CG2530-PC 23..267 79..303 160 29.6 Plus
corto-PB 550 CG2530-PB 23..267 79..303 160 29.6 Plus
corto-PE 550 CG2530-PE 23..267 79..303 160 29.6 Plus
corto-PA 550 CG2530-PA 23..267 79..303 160 29.6 Plus
CG3638-PH 1136 CG3638-PH 749..853 80..170 159 44.8 Plus
CG3638-PL 1224 CG3638-PL 837..941 80..170 159 44.8 Plus
CG43689-PF 1251 CG43689-PF 809..958 82..250 159 33.3 Plus
CG43689-PD 1309 CG43689-PD 867..1016 82..250 159 33.3 Plus
CG43689-PC 1332 CG43689-PC 890..1039 82..250 159 33.3 Plus
CG3638-PG 1472 CG3638-PG 837..941 80..170 159 44.8 Plus
CG43689-PH 1618 CG43689-PH 779..928 82..250 159 33.3 Plus
CG43689-PI 1648 CG43689-PI 809..958 82..250 159 33.3 Plus
CG43689-PG 1648 CG43689-PG 809..958 82..250 159 33.3 Plus
CG43689-PE 1706 CG43689-PE 867..1016 82..250 159 33.3 Plus
nocte-PD 2305 CG17255-PD 1528..1762 87..344 159 29.1 Plus
nocte-PB 2309 CG17255-PB 1528..1762 87..344 159 29.1 Plus
nocte-PA 2309 CG17255-PA 1528..1762 87..344 159 29.1 Plus
nocte-PC 2309 CG17255-PC 1528..1762 87..344 159 29.1 Plus
Cdk8-PA 454 CG10572-PA 350..450 59..174 156 37.9 Plus
nej-PE 3266 CG15319-PE 668..977 52..321 156 29.5 Plus
nej-PB 3276 CG15319-PB 668..977 52..321 156 29.5 Plus
nej-PD 3276 CG15319-PD 668..977 52..321 156 29.5 Plus
nej-PC 3282 CG15319-PC 674..983 52..321 156 29.5 Plus
CG43689-PF 1251 CG43689-PF 534..751 75..303 155 31.5 Plus
CG43689-PD 1309 CG43689-PD 592..809 75..303 155 31.5 Plus
CG43689-PC 1332 CG43689-PC 615..832 75..303 155 31.5 Plus
CG43689-PH 1618 CG43689-PH 504..721 75..303 155 31.5 Plus
CG43689-PI 1648 CG43689-PI 534..751 75..303 155 31.5 Plus
CG43689-PG 1648 CG43689-PG 534..751 75..303 155 31.5 Plus
CG43689-PE 1706 CG43689-PE 592..809 75..303 155 31.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:34:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15593-PA 368 GI15593-PA 286..368 272..354 263 66.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:34:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27035-PA 373 GL27035-PA 81..373 43..354 501 52.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:35:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22322-PA 364 GA22322-PA 144..364 120..354 494 56.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:35:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22817-PA 341 GM22817-PA 1..341 1..354 1205 89.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15637-PA 343 GD15637-PA 1..343 1..354 1167 88.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:35:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15199-PA 362 GJ15199-PA 280..362 272..354 326 78.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:35:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25663-PA 332 GK25663-PA 255..332 277..354 349 87.2 Plus
Dwil\GK25663-PA 332 GK25663-PA 154..201 137..184 192 87.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:35:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15530-PA 337 GE15530-PA 1..337 1..354 1090 75.1 Plus