BDGP Sequence Production Resources |
Search the DGRC for GH12958
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 129 |
Well: | 58 |
Vector: | pOT2 |
Associated Gene/Transcript | Vha36-1-RA |
Protein status: | GH12958.pep: gold |
Preliminary Size: | 1054 |
Sequenced Size: | 1060 |
Gene | Date | Evidence |
---|---|---|
CG8186 | 2001-01-01 | Release 2 assignment |
CG8186 | 2001-11-12 | Blastp of sequenced clone |
CG8186 | 2003-01-01 | Sim4 clustering to Release 3 |
Vha36 | 2008-04-29 | Release 5.5 accounting |
Vha36 | 2008-08-15 | Release 5.9 accounting |
Vha36 | 2008-12-18 | 5.12 accounting |
1060 bp (1060 high quality bases) assembled on 2001-11-12
GenBank Submission: AY069116
> GH12958.complete TTCTGCGACGGTTGCAGTTTTCTTGATACGCAGTTGAAAATTGTTTAGTC CAGCCAATTACCATCCGAAAAAAACAGCAAAATGTCCGGAAAAGATAGGC TACCGATTTTCCCGTCCCGTGGTGCCCAGATGTTGATGAAGGCCCGTCTG GCTGGAGCCCAGAAAGGTCACGGTCTGCTCAAGAAGAAGGCGGATGCCCT GCAGATGCGATTCCGTTTGATTCTGGGCAAGATCATCGAGACCAAGACCC TGATGGGTGATGTTATGAAAGAGGCAGCCTTCTCGCTGGCGGAGGCCAAA TTCACGTCTGGCGACATCAACCAAGTGGTGCTGCAAAACGTGACCAAGGC CCAGATCAAGATCCGCACCAAGAAGGACAACGTGGCTGGTGTCACTCTGC CCGTTTTCGAGTCCTACCAGGACGGATCCGACACCTACGAACTGGCCGGT CTAGCCCGTGGTGGTCAGCAGCTGGCCAAGCTGAAGAAGAACTACCAAAG CGCCGTTAAACTGCTCGTGGAGCTGGCCTCGCTGCAGACCTCATTCGTCA CCCTGGACGAGGTGATCAAGATCACCAACCGTCGTGTGAACGCCATTGAG CATGTGATCATCCCCCGAATCGATAGGACTTTGGCCTACATCATCTCGGA GCTGGACGAGCTCGAGCGTGAGGAGTTCTACCGACTGAAGAAGATCCAGG ACAAGAAGCGCGAGGCACGCATCAAGGCCGACGCCAAGAAGGCGGAGTTG CTGCAGCAGGGCATCGATGTGCGCCAGCAGGCCAATATCCTGGATGAGGG CGATGACGACGTGCTGTTCTAAGTATTACCTTGGATGTGTTTATTCCAGC AATATTATTGTTAAACTATTTTCTGTTCTGTATCCGTTTCCATATTGTAA TTCGCAAAGGGCAAGCCACAAACTTAATTGTACCTATGTAGCAAAAGTGT GTAGACTATTCCAATAAGCAGAAAAGTATGTATTCCATTTTTGTAGTGTA GTGTAAGCTGCGCAAATCATGCATTAAAGTCTTGTTGTATCATAAAAAAA AAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Vha36-RA | 1082 | Vha36-RA | 40..1082 | 1..1043 | 5215 | 100 | Plus |
CG8310-RA | 1069 | CG8310-RA | 206..718 | 109..621 | 1230 | 82.6 | Plus |
CG8310.a | 1237 | CG8310.a | 374..886 | 109..621 | 1230 | 82.6 | Plus |
CG8310-RA | 1069 | CG8310-RA | 746..818 | 649..721 | 260 | 90.4 | Plus |
CG8310.a | 1237 | CG8310.a | 914..986 | 649..721 | 260 | 90.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 11428606..11429648 | 1..1043 | 5215 | 100 | Plus |
chrX | 22417052 | chrX | 2473368..2473731 | 602..239 | 860 | 82.4 | Minus |
chrX | 22417052 | chrX | 2473785..2473901 | 240..124 | 285 | 82.9 | Minus |
chrX | 22417052 | chrX | 2473188..2473305 | 721..604 | 275 | 82.2 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 15541456..15542499 | 1..1044 | 5220 | 100 | Plus |
X | 23542271 | X | 2579579..2579942 | 602..239 | 860 | 82.4 | Minus |
X | 23542271 | X | 2579996..2580112 | 240..124 | 285 | 82.9 | Minus |
X | 23542271 | X | 2579399..2579516 | 721..604 | 275 | 82.2 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 15542655..15543698 | 1..1044 | 5220 | 100 | Plus |
X | 23527363 | X | 2587677..2588040 | 602..239 | 860 | 82.4 | Minus |
X | 23527363 | X | 2588094..2588210 | 240..124 | 285 | 82.9 | Minus |
X | 23527363 | X | 2587497..2587569 | 721..649 | 260 | 90.4 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 11428606..11429648 | 1..1043 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vha36-RA | 1..741 | 82..822 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vha36-1-RA | 1..741 | 82..822 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vha36-1-RA | 1..741 | 82..822 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vha36-RA | 1..741 | 82..822 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vha36-1-RA | 1..741 | 82..822 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vha36-RA | 40..1082 | 1..1043 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vha36-1-RA | 40..1082 | 1..1043 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vha36-1-RA | 22..1064 | 1..1043 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vha36-RA | 40..1082 | 1..1043 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vha36-1-RA | 22..1064 | 1..1043 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 15541456..15542498 | 1..1043 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 15541456..15542498 | 1..1043 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 15541456..15542498 | 1..1043 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 11428961..11430003 | 1..1043 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 15542655..15543697 | 1..1043 | 100 | Plus |
Translation from 81 to 821
> GH12958.hyp MSGKDRLPIFPSRGAQMLMKARLAGAQKGHGLLKKKADALQMRFRLILGK IIETKTLMGDVMKEAAFSLAEAKFTSGDINQVVLQNVTKAQIKIRTKKDN VAGVTLPVFESYQDGSDTYELAGLARGGQQLAKLKKNYQSAVKLLVELAS LQTSFVTLDEVIKITNRRVNAIEHVIIPRIDRTLAYIISELDELEREEFY RLKKIQDKKREARIKADAKKAELLQQGIDVRQQANILDEGDDDVLF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Vha36-1-PA | 246 | CG8186-PA | 1..246 | 1..246 | 1204 | 100 | Plus |
Vha36-3-PC | 249 | CG8310-PC | 1..249 | 1..246 | 1015 | 83.9 | Plus |
Vha36-3-PB | 249 | CG8310-PB | 1..249 | 1..246 | 1015 | 83.9 | Plus |
Vha36-2-PA | 373 | CG13167-PA | 1..214 | 1..214 | 388 | 40.5 | Plus |
Translation from 81 to 821
> GH12958.pep MSGKDRLPIFPSRGAQMLMKARLAGAQKGHGLLKKKADALQMRFRLILGK IIETKTLMGDVMKEAAFSLAEAKFTSGDINQVVLQNVTKAQIKIRTKKDN VAGVTLPVFESYQDGSDTYELAGLARGGQQLAKLKKNYQSAVKLLVELAS LQTSFVTLDEVIKITNRRVNAIEHVIIPRIDRTLAYIISELDELEREEFY RLKKIQDKKREARIKADAKKAELLQQGIDVRQQANILDEGDDDVLF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11142-PA | 246 | GF11142-PA | 1..246 | 1..246 | 1252 | 98.4 | Plus |
Dana\GF21946-PA | 249 | GF21946-PA | 1..249 | 1..246 | 1067 | 84.7 | Plus |
Dana\GF12834-PA | 348 | GF12834-PA | 1..214 | 1..214 | 382 | 38.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20533-PA | 246 | GG20533-PA | 1..246 | 1..246 | 1260 | 99.6 | Plus |
Dere\GG12609-PA | 249 | GG12609-PA | 1..249 | 1..246 | 1058 | 83.9 | Plus |
Dere\GG20264-PA | 381 | GG20264-PA | 1..214 | 1..214 | 387 | 39.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19969-PA | 246 | GH19969-PA | 1..246 | 1..246 | 1244 | 97.2 | Plus |
Dgri\GH12748-PA | 250 | GH12748-PA | 1..250 | 1..246 | 1059 | 83.2 | Plus |
Dgri\GH22755-PA | 340 | GH22755-PA | 1..214 | 1..214 | 395 | 37.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Vha36-1-PA | 246 | CG8186-PA | 1..246 | 1..246 | 1204 | 100 | Plus |
Vha36-3-PC | 249 | CG8310-PC | 1..249 | 1..246 | 1015 | 83.9 | Plus |
Vha36-3-PB | 249 | CG8310-PB | 1..249 | 1..246 | 1015 | 83.9 | Plus |
Vha36-2-PA | 373 | CG13167-PA | 1..214 | 1..214 | 388 | 40.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20255-PA | 246 | GI20255-PA | 1..246 | 1..246 | 1245 | 98 | Plus |
Dmoj\GI15892-PA | 250 | GI15892-PA | 1..250 | 1..246 | 1076 | 84.4 | Plus |
Dmoj\GI18533-PA | 324 | GI18533-PA | 1..213 | 1..213 | 360 | 37.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20077-PA | 246 | GL20077-PA | 1..246 | 1..246 | 1250 | 98.4 | Plus |
Dper\GL14446-PA | 249 | GL14446-PA | 1..249 | 1..246 | 1061 | 83.5 | Plus |
Dper\GL10813-PA | 339 | GL10813-PA | 1..214 | 1..214 | 392 | 40.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20878-PA | 246 | GA20878-PA | 1..246 | 1..246 | 1250 | 98.4 | Plus |
Dpse\GA20975-PA | 249 | GA20975-PA | 1..249 | 1..246 | 1061 | 83.5 | Plus |
Dpse\GA12092-PA | 339 | GA12092-PA | 1..214 | 1..214 | 391 | 40.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18874-PA | 305 | GM18874-PA | 63..305 | 4..246 | 997 | 81.3 | Plus |
Dsec\GM21623-PA | 206 | GM21623-PA | 1..206 | 1..246 | 918 | 78.5 | Plus |
Dsec\GM21350-PA | 360 | GM21350-PA | 1..214 | 1..214 | 387 | 40 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11125-PA | 260 | GD11125-PA | 1..227 | 1..227 | 1148 | 97.4 | Plus |
Dsim\GD10848-PA | 360 | GD10848-PA | 1..214 | 1..214 | 387 | 40 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20208-PA | 248 | GJ20208-PA | 1..246 | 1..246 | 1241 | 97.6 | Plus |
Dvir\GJ16639-PA | 250 | GJ16639-PA | 1..250 | 1..246 | 1067 | 83.2 | Plus |
Dvir\GJ21402-PA | 332 | GJ21402-PA | 1..214 | 1..214 | 389 | 39.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK23028-PA | 247 | GK23028-PA | 1..247 | 1..246 | 1242 | 98 | Plus |
Dwil\GK24913-PA | 250 | GK24913-PA | 1..250 | 1..246 | 1068 | 84.4 | Plus |
Dwil\GK22115-PA | 358 | GK22115-PA | 1..217 | 1..214 | 409 | 39.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE11717-PA | 246 | GE11717-PA | 1..246 | 1..246 | 1265 | 100 | Plus |
Dyak\GE16940-PA | 148 | GE16940-PA | 1..142 | 1..142 | 680 | 91.5 | Plus |
Dyak\GE12423-PA | 372 | GE12423-PA | 1..214 | 1..214 | 380 | 39.1 | Plus |