Clone GH12970 Report

Search the DGRC for GH12970

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:129
Well:70
Vector:pOT2
Associated Gene/TranscriptCG9951-RA
Protein status:GH12970.pep: gold
Preliminary Size:1828
Sequenced Size:1828

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9951 2001-01-01 Release 2 assignment
CG9951 2001-09-19 Blastp of sequenced clone
CG9951 2003-01-01 Sim4 clustering to Release 3
CG9951 2008-04-29 Release 5.5 accounting
CG9951 2008-08-15 Release 5.9 accounting
CG9951 2008-12-18 5.12 accounting

Clone Sequence Records

GH12970.complete Sequence

1828 bp (1828 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058359

> GH12970.complete
CACAATTGGGTCACAAAAAAAACACTCCCATTAAAATGCGAAAATAAATA
GTAAATAAAGCGAATCATGGACGAAGTGGACAAGATAATCATGCACCAGC
TGCACCAGGTGGACGCGACCATCGAGCCGACGGATGAGCTGTCCGACTTC
ACCCCGGAACAGGTGGTGCGAGCAGTCTCCGGCTGTCTGGCGGAGATTCG
TCCAGACTTGCAGCTTCCACGCACTCTCCCCGGCGGAGCGATGGCCCAGC
GCTTCGGAGTGGCCAGCTCCTTGGCGCAGGGTTGCAAGGATAGCGGTTAC
CGAGGCGATATTGGTTATCAGACCTTTTTGTATCCCAATGCCGTGGAATT
GCGGCGACTGCTAATGTTTCTCATCGAACAACTTCCGCGGGAGCGTCAAG
GCACAGAGGACGGTGCCAGCAAGTCGCAAACCCTGAGCCACAGGCAACTC
CTGGAGCGGAAGATCCGAAAGGAGCTCGCCCAACAACTGAAGACACCCTG
GGTCCCACAGTTTGCCCGGTCCGTGGGCAATCGTAAATTACTCGGTTGCA
GTAGCCTGGGCATTGAATTTCGACCAAACATCAATCTCAACATTCCATCC
GCCAATCCCGAGGAGCGTTCCAAGGAGCAGCAGCAGTATCTCGACCAACA
GGCACCCAATCTCTTCCAGCAAACATCCTCCACCTCGACGGATCTCATTG
CCTCCGTGCTGCACAAGAATGAGCTGGACAGGTGGGGCCAGATATTGCCG
GATTCAACACTTATCTTTGTGAGCAGCGAGGATCCAGCGCCGCCCCTGAT
TCCGACCGTAAAACCGCCCGCCAGTGCGGAGAAGGAGGAGGAGCCTTCAC
CCATCCAAGAACTGAGCGACCAAGTCCAGGAGTTGCGAGTCCAATGCGAA
AACCTGCTAGCGGAACGCAAAGCACATGCTGTTGCCATTGCAGCTCTGAA
ACAGCGGGAAACTAAAGCGAGAGAGGAGATCAGTCGCATTCAGCCCACGC
TTAAACTGCACGAACGCACCTCCTTGGTTCTCGCCGATTCCGAGGAAAAC
CTGGCCAAACTGGAGGCCCTGCTAAAATCCACGCAAAGCAAAAGGCTCAC
GCTTACCCAGCAGTGGCAGGATTACAGGAAACCGCTGCTGGAAAGCCTAG
AGAAACTAAAGACCGCCAAGGAGGCTCAGGAGGTCCAGGGCATTCGCAAC
AGCATCGAGCAGCTGGAGCAGGAGCTTCTGGCCAAGACCCAACAGCACAA
CGAACTTAATGCCACCCTGCGTAGCGCCAGTCAGTCCTTGGCACCTCGCA
AGGAGTACACCCGCAGGATACATGAATTCATCGGGAACATACGCAAGCAA
CGAGCGGATATCTACAAAGTTCTGGATGACACGCGACAACTCCAAAAGCA
GCTTAATGTCGTGGGTGCCCAGTTGCAGCGCCAGTTCAACTACACGGACG
ACCTGCTCTTCCAGAGCGCCAAGCATGATCTCCACGCGAAGCGGGCCTAC
AAGCTACTGGCCCAACTGCACGCCAATTGCAATGAGCTGGTCGAGTGCGT
CTCCCTCACGGGAAACGTGACCAAGCAGATCCGCGAACTTGAGGTCCAAA
TCGATGGGGAGAAACTGAAGAACGTGCTGACCAGTCTGCAGCAGATCACC
GGCGATATCCAGAAGTTCGAGCAGCATATCCAGGAGCTCCAGGAGCAAAT
ACGTGCCGTGGAGCAGACGAACGCAGGGAGTTAGTTACGCGGAATCACTT
GTTTACCAGTGCCAATCACAATAAACGAATTGATGCACGCCAAGCGTTCA
TTTTATTAGTAAAAAAAAAAAAAAAAAA

GH12970.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG9951-RA 1826 CG9951-RA 17..1826 1..1810 9050 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:01:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16852672..16854481 1..1810 9035 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:48:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:01:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16863180..16864999 1..1820 9085 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:45:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16856280..16858099 1..1820 9085 99.9 Plus
Blast to na_te.dros performed on 2019-03-15 18:01:50 has no hits.

GH12970.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:02:39 Download gff for GH12970.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16852672..16854481 1..1810 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:39:24 Download gff for GH12970.complete
Subject Subject Range Query Range Percent Splice Strand
CG9951-RA 1..1668 67..1734 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:07:59 Download gff for GH12970.complete
Subject Subject Range Query Range Percent Splice Strand
CG9951-RA 1..1668 67..1734 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:52:59 Download gff for GH12970.complete
Subject Subject Range Query Range Percent Splice Strand
CG9951-RA 1..1668 67..1734 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:38:44 Download gff for GH12970.complete
Subject Subject Range Query Range Percent Splice Strand
CG9951-RA 1..1668 67..1734 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:52:57 Download gff for GH12970.complete
Subject Subject Range Query Range Percent Splice Strand
CG9951-RA 1..1668 67..1734 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:58:13 Download gff for GH12970.complete
Subject Subject Range Query Range Percent Splice Strand
CG9951-RA 17..1826 1..1810 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:07:59 Download gff for GH12970.complete
Subject Subject Range Query Range Percent Splice Strand
CG9951-RA 17..1826 1..1810 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:52:59 Download gff for GH12970.complete
Subject Subject Range Query Range Percent Splice Strand
CG9951-RA 17..1826 1..1810 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:38:44 Download gff for GH12970.complete
Subject Subject Range Query Range Percent Splice Strand
CG9951-RA 19..1828 1..1810 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:52:57 Download gff for GH12970.complete
Subject Subject Range Query Range Percent Splice Strand
CG9951-RA 17..1826 1..1810 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:02:39 Download gff for GH12970.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16863180..16864989 1..1810 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:02:39 Download gff for GH12970.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16863180..16864989 1..1810 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:02:39 Download gff for GH12970.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16863180..16864989 1..1810 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:52:59 Download gff for GH12970.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16856280..16858089 1..1810 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:16:09 Download gff for GH12970.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16856280..16858089 1..1810 100   Plus

GH12970.pep Sequence

Translation from 66 to 1733

> GH12970.pep
MDEVDKIIMHQLHQVDATIEPTDELSDFTPEQVVRAVSGCLAEIRPDLQL
PRTLPGGAMAQRFGVASSLAQGCKDSGYRGDIGYQTFLYPNAVELRRLLM
FLIEQLPRERQGTEDGASKSQTLSHRQLLERKIRKELAQQLKTPWVPQFA
RSVGNRKLLGCSSLGIEFRPNINLNIPSANPEERSKEQQQYLDQQAPNLF
QQTSSTSTDLIASVLHKNELDRWGQILPDSTLIFVSSEDPAPPLIPTVKP
PASAEKEEEPSPIQELSDQVQELRVQCENLLAERKAHAVAIAALKQRETK
AREEISRIQPTLKLHERTSLVLADSEENLAKLEALLKSTQSKRLTLTQQW
QDYRKPLLESLEKLKTAKEAQEVQGIRNSIEQLEQELLAKTQQHNELNAT
LRSASQSLAPRKEYTRRIHEFIGNIRKQRADIYKVLDDTRQLQKQLNVVG
AQLQRQFNYTDDLLFQSAKHDLHAKRAYKLLAQLHANCNELVECVSLTGN
VTKQIRELEVQIDGEKLKNVLTSLQQITGDIQKFEQHIQELQEQIRAVEQ
TNAGS*

GH12970.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:01:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23941-PA 556 GF23941-PA 1..556 1..555 2371 80.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:01:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13587-PA 553 GG13587-PA 1..553 1..555 2752 94.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:01:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16599-PA 554 GH16599-PA 1..548 1..549 1937 68.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG9951-PA 555 CG9951-PA 1..555 1..555 2793 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:01:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12445-PA 558 GI12445-PA 1..552 1..549 1927 67.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:01:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20854-PA 553 GL20854-PA 1..547 1..549 2180 76.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:01:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22148-PA 553 GA22148-PA 1..547 1..549 2180 76.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:01:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25667-PA 554 GM25667-PA 1..554 1..555 2800 96.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14674-PA 554 GD14674-PA 1..554 1..555 2849 98 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12344-PA 551 GJ12344-PA 1..545 1..549 1951 69.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:01:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20894-PA 571 GK20894-PA 1..565 1..549 1879 66.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:01:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19884-PA 554 GE19884-PA 1..554 1..555 2749 94.6 Plus

GH12970.hyp Sequence

Translation from 66 to 1733

> GH12970.hyp
MDEVDKIIMHQLHQVDATIEPTDELSDFTPEQVVRAVSGCLAEIRPDLQL
PRTLPGGAMAQRFGVASSLAQGCKDSGYRGDIGYQTFLYPNAVELRRLLM
FLIEQLPRERQGTEDGASKSQTLSHRQLLERKIRKELAQQLKTPWVPQFA
RSVGNRKLLGCSSLGIEFRPNINLNIPSANPEERSKEQQQYLDQQAPNLF
QQTSSTSTDLIASVLHKNELDRWGQILPDSTLIFVSSEDPAPPLIPTVKP
PASAEKEEEPSPIQELSDQVQELRVQCENLLAERKAHAVAIAALKQRETK
AREEISRIQPTLKLHERTSLVLADSEENLAKLEALLKSTQSKRLTLTQQW
QDYRKPLLESLEKLKTAKEAQEVQGIRNSIEQLEQELLAKTQQHNELNAT
LRSASQSLAPRKEYTRRIHEFIGNIRKQRADIYKVLDDTRQLQKQLNVVG
AQLQRQFNYTDDLLFQSAKHDLHAKRAYKLLAQLHANCNELVECVSLTGN
VTKQIRELEVQIDGEKLKNVLTSLQQITGDIQKFEQHIQELQEQIRAVEQ
TNAGS*

GH12970.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:37:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG9951-PA 555 CG9951-PA 1..555 1..555 2793 100 Plus