Clone GH13023 Report

Search the DGRC for GH13023

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:130
Well:23
Vector:pOT2
Associated Gene/TranscriptCG7549-RB
Protein status:GH13023.pep: validated not full length
Preliminary Size:1727
Sequenced Size:1490

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7549 2001-01-01 Release 2 assignment
CG7549 2001-09-19 Blastp of sequenced clone
CG7549 2003-01-01 Sim4 clustering to Release 3
CG7549 2008-04-29 Release 5.5 accounting
CG7549 2008-08-15 Release 5.9 accounting
CG7549 2008-12-18 5.12 accounting

Clone Sequence Records

GH13023.complete Sequence

1490 bp (1490 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058361

> GH13023.complete
ACCAGTAGCCGTGCCGGTGTTCCAAGCGATGCCCCAATCCATCGCCAGGA
TCGCCAATGTCGGTAAGGAGCACCGAACGGTGTCCAGTCACCCGAATTAC
CTTCAGTTCGAGGAGCCCAAGTTCGACCTAAAGGATGTTACCGTTGAAGA
GCTGGCCGCCGCTGCTAACGTAACAGTGGACACTATCAAGCACGCCATTT
ACGTCCGGGAGCAGCAGCTAAAGGCCGAACACCGGGCCCAACTGGCGGCC
AAGCTAAGGGAAGAGTTTATGCGCACCTCCACTGTGAGGACTACGACCAC
GACGACCACAACGACAACCACTACACCGCGCCCACAAAAGTCGCTGGCGG
AGCACAAGGTGTCCAAGGTAATGAATGCCCCTAAAGAGTACTATCCAGTG
GGCTACGATAAGAACTTTGACGACAACTTCAAATCCAAGGTGGACCTGCC
ACCTACAAGCTTCTCCTGCGCTAAGCAAAAGCACTTCCCCGGTCTCTACG
CTGACACCGACCTTGGCTGCATGGTATTCCACGTATGCGCCCTAACCGAT
GACGGCATGGTGCGGAAGTCGTTCCTTTGCCCGGAGAACACACTCTTCGA
CCAGACGATCTTAAAGTGCAACTGGTGGTTCTACGTCGACTGCAGCTCTA
GCACGAGCGTCTACGACTCCAACATTCCCATCTCAAAGAGCTATCAGCTG
ATGAAGTCGCTCACCTATTTCTCCAAGTACGCTGGCGGTCAGAGGCACGA
GCAGGGTGGAGACAAAGACGAGAATGCGCTGGACATCGATTCGCTGAGAG
AGTCGATGGAGGGCGTGGCCCGGCGCCAGGAGCAAGCCAAGAAGGCGGAG
CTGAGGGTGGAGGAGCAGCGCAGCATGCCCAAGGAGGACCATGAGCACGT
GGTGCCCGCGGAGGCAGAGCAGCAGCTATCCAACTAGGCTTAACTAGGCC
TATCCCAACGCTATCTGAGATCTAGGTTAAGAGTTCACGATCGAGCGCCT
CTGGTCGACTAGCCGTACGTAGTCAAGTCCTTTGCTAAAGTCAGCGGTTT
TCACACTCATCACTGAGAAAAACTATTCCCGGATCATATGTATACCGATT
CAAGGACGCCTATTTGTGGCGCTTCAACATATTGTATCACAGAGTCAAAA
TAATTTTCTCCATATCTATTAAAGAAAATGGATAATATATATGATTAAGA
TTATTTTGATCGCAAAATAGAGGACACTAGGGAACTGATATTATTATGAT
TTTTTCTCTGTTAAGTATCATCACTTCCTGTGGGCAGCTCCTGTACTGCA
GAGCGCCCCTTACACTTAGTCTCTTCCTAGCCATTAGGTGGATAATATCT
AGTTAAGTCCCATCAGTAAGTACATTTTGAGTTGGGCACTTATTTTTAGT
ACGTTCTACTATTTATTTATTGTACAAGTATTTCCCGCAAATTAAACGTC
GTTTGTTTAAAAATGTTCAAAAAAAAAAAAAAAAAAAAAA

GH13023.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:23:13
Subject Length Description Subject Range Query Range Score Percent Strand
mtg-RD 2268 mtg-RD 801..2268 1..1468 7340 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:25:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4085780..4086725 523..1468 4730 100 Plus
chr3R 27901430 chr3R 4085098..4085466 1..369 1830 99.7 Plus
chr3R 27901430 chr3R 4085552..4085712 366..526 805 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:48:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:25:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8259773..8260723 523..1473 4755 100 Plus
3R 32079331 3R 8259091..8259459 1..369 1845 100 Plus
3R 32079331 3R 8259545..8259705 366..526 805 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:45:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8000604..8001554 523..1473 4755 100 Plus
3R 31820162 3R 7999922..8000290 1..369 1845 100 Plus
3R 31820162 3R 8000376..8000536 366..526 805 100 Plus
Blast to na_te.dros performed on 2019-03-16 10:25:37 has no hits.

GH13023.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:26:51 Download gff for GH13023.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4085098..4085464 1..367 99 -> Plus
chr3R 4085554..4085709 368..523 100 -> Plus
chr3R 4085781..4086725 524..1468 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:39:30 Download gff for GH13023.complete
Subject Subject Range Query Range Percent Splice Strand
CG7549-RA 627..1563 1..937 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:08:01 Download gff for GH13023.complete
Subject Subject Range Query Range Percent Splice Strand
mtg-RD 801..1737 1..937 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:01:13 Download gff for GH13023.complete
Subject Subject Range Query Range Percent Splice Strand
mtg-RE 735..1671 1..937 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:38:46 Download gff for GH13023.complete
Subject Subject Range Query Range Percent Splice Strand
CG7549-RA 627..1563 1..937 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:07:17 Download gff for GH13023.complete
Subject Subject Range Query Range Percent Splice Strand
mtg-RH 228..1164 1..937 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:58:17 Download gff for GH13023.complete
Subject Subject Range Query Range Percent Splice Strand
CG7549-RB 1..1468 1..1468 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:08:01 Download gff for GH13023.complete
Subject Subject Range Query Range Percent Splice Strand
mtg-RD 801..2268 1..1468 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:01:13 Download gff for GH13023.complete
Subject Subject Range Query Range Percent Splice Strand
mtg-RE 931..2398 1..1468 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:38:47 Download gff for GH13023.complete
Subject Subject Range Query Range Percent Splice Strand
CG7549-RB 1..1468 1..1468 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:07:17 Download gff for GH13023.complete
Subject Subject Range Query Range Percent Splice Strand
mtg-RH 766..2233 1..1468 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:26:51 Download gff for GH13023.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8259091..8259457 1..367 100 -> Plus
3R 8259547..8259702 368..523 100 -> Plus
3R 8259774..8260718 524..1468 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:26:51 Download gff for GH13023.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8259091..8259457 1..367 100 -> Plus
3R 8259547..8259702 368..523 100 -> Plus
3R 8259774..8260718 524..1468 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:26:51 Download gff for GH13023.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8259091..8259457 1..367 100 -> Plus
3R 8259547..8259702 368..523 100 -> Plus
3R 8259774..8260718 524..1468 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:01:13 Download gff for GH13023.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4084813..4085179 1..367 100 -> Plus
arm_3R 4085269..4085424 368..523 100 -> Plus
arm_3R 4085496..4086440 524..1468 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:16:12 Download gff for GH13023.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7999922..8000288 1..367 100 -> Plus
3R 8000378..8000533 368..523 100 -> Plus
3R 8000605..8001549 524..1468 100   Plus

GH13023.hyp Sequence

Translation from 1 to 936

> GH13023.hyp
PVAVPVFQAMPQSIARIANVGKEHRTVSSHPNYLQFEEPKFDLKDVTVEE
LAAAANVTVDTIKHAIYVREQQLKAEHRAQLAAKLREEFMRTSTVRTTTT
TTTTTTTTPRPQKSLAEHKVSKVMNAPKEYYPVGYDKNFDDNFKSKVDLP
PTSFSCAKQKHFPGLYADTDLGCMVFHVCALTDDGMVRKSFLCPENTLFD
QTILKCNWWFYVDCSSSTSVYDSNIPISKSYQLMKSLTYFSKYAGGQRHE
QGGDKDENALDIDSLRESMEGVARRQEQAKKAELRVEEQRSMPKEDHEHV
VPAEAEQQLSN*

GH13023.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:38:12
Subject Length Description Subject Range Query Range Score Percent Strand
mtg-PH 387 CG7549-PH 77..387 1..311 1628 100 Plus
mtg-PG 387 CG7549-PG 77..387 1..311 1628 100 Plus
mtg-PF 515 CG7549-PF 205..515 1..311 1628 100 Plus
mtg-PE 556 CG7549-PE 246..556 1..311 1628 100 Plus
CG32036-PC 173 CG32036-PC 26..160 119..244 178 29.6 Plus

GH13023.pep Sequence

Translation from 28 to 936

> GH13023.pep
MPQSIARIANVGKEHRTVSSHPNYLQFEEPKFDLKDVTVEELAAAANVTV
DTIKHAIYVREQQLKAEHRAQLAAKLREEFMRTSTVRTTTTTTTTTTTTP
RPQKSLAEHKVSKVMNAPKEYYPVGYDKNFDDNFKSKVDLPPTSFSCAKQ
KHFPGLYADTDLGCMVFHVCALTDDGMVRKSFLCPENTLFDQTILKCNWW
FYVDCSSSTSVYDSNIPISKSYQLMKSLTYFSKYAGGQRHEQGGDKDENA
LDIDSLRESMEGVARRQEQAKKAELRVEEQRSMPKEDHEHVVPAEAEQQL
SN*

GH13023.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:01:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22990-PA 515 GF22990-PA 209..515 1..302 1426 91.5 Plus
Dana\GF18106-PA 1141 GF18106-PA 855..933 133..215 193 37.3 Plus
Dana\GF17664-PA 407 GF17664-PA 180..250 140..215 186 46.1 Plus
Dana\GF24659-PA 172 GF24659-PA 34..139 100..215 182 33.1 Plus
Dana\GF16520-PA 620 GF16520-PA 45..117 143..220 180 44.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:01:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24032-PA 517 GG24032-PA 216..517 1..302 1627 98.3 Plus
Dere\GG13941-PA 401 GG13941-PA 183..253 140..215 190 47.4 Plus
Dere\GG20015-PA 641 GG20015-PA 47..119 143..220 182 44.3 Plus
Dere\GG13930-PA 1128 GG13930-PA 92..158 140..212 181 43.8 Plus
Dere\GG14031-PA 173 GG14031-PA 38..140 101..215 172 31.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:01:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14202-PA 508 GH14202-PA 212..497 1..282 1228 82.8 Plus
Dgri\GH19216-PA 971 GH19216-PA 664..812 133..290 198 32.5 Plus
Dgri\GH15150-PA 152 GH15150-PA 42..118 139..215 187 40.3 Plus
Dgri\GH18295-PA 399 GH18295-PA 176..246 140..215 187 46.1 Plus
Dgri\GH18294-PA 1152 GH18294-PA 92..158 140..212 179 42.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:32
Subject Length Description Subject Range Query Range Score Percent Strand
mtg-PF 515 CG7549-PF 214..515 1..302 1583 100 Plus
mtg-PE 556 CG7549-PE 255..556 1..302 1583 100 Plus
mtg-PH 387 CG7549-PH 86..387 1..302 1583 100 Plus
mtg-PG 387 CG7549-PG 86..387 1..302 1583 100 Plus
CG14607-PB 401 CG14607-PB 183..253 140..215 182 47.4 Plus
CG14304-PC 942 CG14304-PC 655..733 133..215 182 38.6 Plus
CG14304-PB 1136 CG14304-PB 849..927 133..215 182 38.6 Plus
CG14304-PA 1136 CG14304-PA 849..927 133..215 182 38.6 Plus
CG32036-PC 173 CG32036-PC 26..160 110..235 178 29.6 Plus
CG14880-PA 637 CG14880-PA 47..119 143..220 168 44.3 Plus
CG14880-PB 637 CG14880-PB 47..119 143..220 168 44.3 Plus
thw-PC 1137 CG14608-PC 105..177 140..218 168 41.8 Plus
CG13643-PE 806 CG13643-PE 48..123 139..214 157 42.9 Plus
CG13643-PC 807 CG13643-PC 48..123 139..214 157 42.9 Plus
CG13643-PB 807 CG13643-PB 48..123 139..214 157 42.9 Plus
CG13675-PD 355 CG13675-PD 69..191 144..289 154 28.4 Plus
CG13675-PC 151 CG13675-PC 69..135 144..215 152 40.3 Plus
CG14301-PB 196 CG14301-PB 97..168 140..215 152 39.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:01:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22111-PA 514 GI22111-PA 208..514 1..302 1257 81.4 Plus
Dmoj\GI24105-PA 404 GI24105-PA 171..248 133..215 191 43.4 Plus
Dmoj\GI24252-PA 1098 GI24252-PA 788..866 133..215 191 37.3 Plus
Dmoj\GI12087-PA 172 GI12087-PA 63..139 139..215 184 39 Plus
Dmoj\GI23649-PA 625 GI23649-PA 35..107 143..220 180 44.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:01:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23358-PA 538 GL23358-PA 255..538 18..302 1271 88.1 Plus
Dper\GL12430-PA 403 GL12430-PA 171..248 133..215 185 42.2 Plus
Dper\GL12429-PA 1215 GL12429-PA 92..158 140..212 179 43.8 Plus
Dper\GL22245-PA 658 GL22245-PA 45..117 143..220 176 43 Plus
Dper\GL17963-PA 209 GL17963-PA 103..179 139..215 175 37.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:02:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20431-PB 566 GA20431-PB 265..566 1..302 1351 87.8 Plus
Dpse\GA12893-PA 1184 GA12893-PA 901..972 140..215 192 42.1 Plus
Dpse\GA13106-PA 403 GA13106-PA 171..248 133..215 186 42.2 Plus
Dpse\GA13107-PB 1142 GA13107-PB 92..158 140..212 178 43.8 Plus
Dpse\GA13317-PA 658 GA13317-PA 45..117 143..220 176 43 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:02:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23712-PA 504 GM23712-PA 203..504 1..302 1641 99 Plus
Dsec\GM18696-PA 1152 GM18696-PA 865..943 133..215 197 38.6 Plus
Dsec\GM10943-PA 395 GM10943-PA 177..248 140..216 194 46.8 Plus
Dsec\GM15438-PA 641 GM15438-PA 47..119 143..220 181 44.3 Plus
Dsec\GM24865-PA 173 GM24865-PA 38..140 101..215 174 31.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:02:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18525-PA 201 GD18525-PA 65..201 166..302 733 97.8 Plus
Dsim\GD19923-PA 395 GD19923-PA 177..247 140..215 191 47.4 Plus
Dsim\GD20294-PA 641 GD20294-PA 47..119 143..220 181 44.3 Plus
Dsim\GD12917-PA 173 GD12917-PA 38..140 101..215 173 30.4 Plus
Dsim\GD18253-PA 804 GD18253-PA 48..124 139..215 167 42.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:02:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24228-PA 499 GJ24228-PA 193..499 1..302 1304 83.6 Plus
Dvir\GJ10824-PA 1126 GJ10824-PA 826..904 133..215 193 37.3 Plus
Dvir\GJ10929-PA 405 GJ10929-PA 172..249 133..215 189 42.2 Plus
Dvir\GJ13358-PA 177 GJ13358-PA 68..144 139..215 185 39 Plus
Dvir\GJ10927-PA 1173 GJ10927-PA 93..159 140..212 179 42.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:02:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13177-PA 493 GK13177-PA 186..493 1..302 1336 84.6 Plus
Dwil\GK14170-PA 1051 GK14170-PA 756..834 133..215 196 38.6 Plus
Dwil\GK10820-PA 391 GK10820-PA 142..266 93..243 194 33.8 Plus
Dwil\GK10466-PA 174 GK10466-PA 48..140 111..215 184 33.3 Plus
Dwil\GK10819-PA 1146 GK10819-PA 92..158 140..212 180 43.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:02:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25858-PA 515 GE25858-PA 214..515 1..302 1627 98 Plus
Dyak\GE24914-PA 400 GE24914-PA 182..252 140..215 190 47.4 Plus
Dyak\GE26319-PA 641 GE26319-PA 47..119 143..220 181 44.3 Plus
Dyak\GE24913-PA 1058 GE24913-PA 91..157 140..212 181 43.8 Plus
Dyak\GE21234-PA 174 GE21234-PA 39..141 101..215 174 31.3 Plus