Clone GH13033 Report

Search the DGRC for GH13033

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:130
Well:33
Vector:pOT2
Associated Gene/TranscriptIndy-2-RA
Protein status:GH13033.pep: gold
Preliminary Size:3996
Sequenced Size:4085

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4961 2001-01-01 Release 2 assignment
CG32921 2001-07-04 Blastp of sequenced clone
CG32921 2003-01-01 Sim4 clustering to Release 3
Indy-2 2008-04-29 Release 5.5 accounting
Indy-2 2008-08-15 Release 5.9 accounting
CG33934 2008-08-15 Release 5.9 accounting
Indy-2 2008-12-18 5.12 accounting
CG33934 2008-12-18 5.12 accounting
CG33934 2011-03-01 Transcript Validation

Clone Sequence Records

GH13033.complete Sequence

4085 bp (4085 high quality bases) assembled on 2001-07-04

GenBank Submission: AY060287

> GH13033.complete
ATCTAGTACTCCGTTGTCATAAGATCCAGTCACACACAAGTTTCCAACTC
ATATATATACACATTGTAAATTAACTTAGGCCTGTTAACTAAACAAGATG
GCAGAACCAGGAGAACAACGAAAATTCGTATTGGGACGCTGTTGTATTTT
CCACTGGCGCGGGAAGGCTTCAATAATTATACCCTTGATCACACTGCCAA
TTCTTATTTATGGCTTTCAGACCGACATGGCCGAGTTCAAGTGCCTGTGG
CTTATTGTTACCATGGCCCTGCTGTGGATCACCGAAACCCTACCGATATA
TGTCACGGCATTGTTTCCCCTTGTCTTTTGCCCTCTCCTTGGTCTTGTGA
ATGCCTCTATAGTCTGCAAACAGTACTTCACCGACACCATTGTGGTATTC
CTTGGTGGGCTTATTGTGGCCTTGGGAATTGAGTACAGTAATCTACACAC
CAGAATTGCCCTGAGGGTCATTCGGATTGTCGGTGGAAGTCCTAGACGTT
TATTCGTAGGCTTGATGAGCGTGAGCACGTTTATGGGATTGTGGATATCC
AACTCAGCCGGAACGGCCATGATGTGCCCCATTGTCAAAGCGCTGGTCAA
TGAATTGGATACCAACAAAATATTTCCCGTTTATATGACGCAAGAGGAAG
AACCAGTAGAGGAGGGAGAACCACCACATCCGTCGAAGATAACAGTAGCC
TTCTACGCTGGCATAGCCTACGCCTCCTCCATTGGGGGACTGGGAACACT
GATTGGCACAGGAACGAATCTGGTCTTTAGGGGCATATACACGGAGCGAT
TTCCCACTTCTACGGTGGAGATTACATTTGCCAACTTTATGTTCTACTCG
ATACCCTTGATGGTGATTGTAAACGTTACGCTGGTTATCATAGCTTTCCT
CATCACGCACATGGGACTGTTTCGACCAAATAGTAAAACCGGTAAAATCA
TTGCGGAGGCCAACACAAACAGGAAACTGATGGAGGATGTTTTGCGACAG
CGCCATATTGATTTGGGCCCAATGAGCTGTCATGAAATTCAAATGGCCAT
CGCCTTTGCTTTTATGATAGTGCTCCTAATTACCCGCAAGCCGGGATTCG
TTCCGGGTTGGAGCGATTTGATCAATAGAAAGGTAGTGGGAAGTGCATCG
GGACTGTCATTTATTGTTCTACTGATTTTTGCCTTGCCCACCCAATATAC
GTTCTTCAAGTACTGTTGCGGTAAAGGTCCGTTTACCGCCCAGGCGATCG
ATGCGATATTATCGTGGGAATATGTTTTACGCAACATTCCCTGGGGCCTA
TTATTTCTGCTGGGTGGTGGCTTTGCCTTGGCCGTGGCCAGCAGGGAAAC
TGGTTTGAACATAATGATCTCCAAGGCCATGCAAGTCCTCATCGGATTGC
CAAATATTGTGGTGCAGTCGATCACGTTTGTATTGGCCAATTTTTTCTCC
GCTTTCAACGCCAACGTTGTTGTGGCGAACATTGTGCTACCAATTTTATG
TGAAATGTCTCTCGCTCTGGAGCTACATCCTTTGATTTTAACTCTGCCAG
CTTGTTTGGGAATTAGCATGGTCTACTTTTTACCCGTGAGCACGCCGCCA
AATGCAATTGTTACCCAATATGCACATATTAAGACCAAATACTTTGCCTG
TTGCGGTATAGTGCCCACCATTATCGGGATTTCTGTGGCTCTGGTGAACA
CGAATACCTGGGGATTGATAATATTTCCAGAATCGAAAAGCTTTCCAGAT
TGGGCAAAGGAAATTAAGAATCAAACAAAAATATAATGATGGAACTAAAG
GGGTTTCAAATCTTGTTATAAATTCTATAAAAATGATGTTTTGGAACGCA
AAAAGTATATAAATTCAAATGAATTCTTGATCACAACCACGTCAAGCCCG
TTTATTATTTTTTATTTATTTTTTTTCGCGTTTAATGGATATCTGATAAC
CAAGGCACTCCTACATACAAATTTATCAGTTGTCAAAAATCATGTGTATT
TTTTTGTTCGAACTTCATTTCAAGTATTCCAGTAGGCAATGATATATTGG
TTCAAGTAAAATCGAAAAAATTCATTACGATCGTATTAGAAGCCAAGCAA
AATGGGAGATGCTGACGGAAAAATTGGAGGTGGTCAGGCCGTAAAGAGAT
GTTGCGGCTTCCATTGGAGGGGCAAGGCGACCGCCATGATTCCTCTCATC
ACATTGCCGATTATGATCTATGGGGTCTTGGAGAATAATTTGGCATTTCA
ATGCATGTATCTGGTGGCCAATATGGCGCTCTTCTGGATCACGGAAGCCA
TTCCTCTATATTTGACAGCTCTGTTTCCGGTCGTTTTTCTGCCACTGTTT
GGCATTTTGACTTCGGAAAAGGTGTGCAGCTTTTACTTTAGTGACACCGT
GGTTATGTTCATTGGGGGACTGCTTATTGCTCTGGCCATAGAATATAGCA
ATCTCCATCAACGTATTGCACTCAACACTATTCTAATAGTGGGCTGCAGT
CCGAGGCGCTTGCACTTCGGATTGGTCATGGTGACTTGCTTCATTTCGCT
CTGGATTTCAAACTCAGCAGCCACTGCCATGATGTGTCCAATAGTCAAAG
CAGTGCTCAATGAAATGGAAACTCAAAACATTTTTGCCATTTACAAGACG
CAGGAAGAGGAGCCAGTGGAAGAGGGAGACCCACCGCATCCGTCGACAAT
CTCGATGGCGTTCTATTTCGGCATCGCGTACTCTTCGTCAATCGGTGGTT
GTGGCACCTTGATCGGAACTGGGACGAACCTGACTTATAAGGGCTTATAC
GATACACGTTTTCCCAACTCCGACGAGAAGATTGACTTCCCCATCTTTAT
GGCGTACTCCGTTCCGTTCGTAGTGCTCGTGCTTATCTTTCTCACGTACT
TCTCGCTACAAGTCACACACATGGGTCTCTTCCGGCCGAATAGCAAAATT
GGTCAGGAGGTGAAGAAGGGCGCCGAGAGCCAGGACGTTGTCAAGGATGT
GATCAAGCAGCGCAAGGCAGAGCTAGGACCGATGAGCTGCCACGAGATTC
AAGTCGGTTTGCTCTTCGTTCTGATGATTTTCCTGCTCTTCACCCGAAAA
CCTGGTTTCTTTCCGGGATGGGCTGACTTTCTGAATGCCAAAGCCATTGG
CAGTGGTCCTCCAGTATTTTTCGCAACAATACTGCTCTTCGCGCTGCCCA
CACAGTACACCTTCTTCAAGTACTGCTGCGGAAAGGCTCCTTTCCCAGGA
CAAACTTTGGATGCCTGCCTGTCGTGGGTCTACTGCCAAAAGTACACCCC
CTTTGGCCTGGCCTTTCTGTTGGGAGGTGGATTTGCTTTGGCTGAGGGCA
GCAGGGTAAGCGGAATGGCCAAAATGCTGGGCGAGTCCTTAGCATTCGCT
GGTGAAATGCATTCCGTCCTCGTTATATCAATGTGTATTATAATCTCCCT
ATTCTGCACTGCATTCGCATCCAATGTGGCTATCTGCAATATTCTTATCC
CGATCTTCTCGGAAATGGCCCTGGCCATCGAAGTGCATCCCATGAAGCTG
ACTTTTCCGGCTGCCCTGGCCTGCAGCTTGGCTTTCCATCTGCCCGTAAG
CACTCCGCCTAATGCAATTATATCCGGCTTTACGGGTTTGAAAACAAAGT
ACATGGCCATCGCTGGGATTCTGCCTACATGTTGGGCCTTCCTATGTCTG
CTGTTCACCGGAACCGTGTGGACCATGCTGATCTATCCGGGGACGACGGA
ATTCCCCTCTTGGGCTATTTAGCTCCAATTATAAAATGCCTGCGAAGTGG
GGACAATCCATATCTACAGACATACGAAGACTCGAAGATTCAAGATGGAA
CATGTGAAAAATTTCTGGTATTCCCAATAATATTTCTGTCAAATCGAAAG
GCTTTGAGGTCAAATGAACTGGATCTTTGTTTTGGCAGCAATTTTGTTGA
GTTGCATGCCGCGTTTGGCAAAATTTTTAGGTGTGCTCACATTACTAATC
TTATGCGGTATTTCGTTTAATGGCTAATAAATAAAAAGCCCACAATTTGC
GGCAATAAAACCACAAAAAAAAAAAAAAAAAAAAA

GH13033.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG33934-RE 4064 CG33934-RE 1..4064 1..4064 20320 100 Plus
Indy-2-RA 4064 Indy-2-RA 1..4064 1..4064 20320 100 Plus
CG33934-RD 4061 CG33934-RD 1..4061 1..4064 20250 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:19:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 15869366..15869829 1646..2109 2320 100 Plus
chr3R 27901430 chr3R 15868056..15868392 796..1132 1685 100 Plus
chr3R 27901430 chr3R 15871074..15871413 2802..3141 1655 99.1 Plus
chr3R 27901430 chr3R 15872007..15872292 3517..3802 1370 98.6 Plus
chr3R 27901430 chr3R 15871747..15871942 3323..3518 980 100 Plus
chr3R 27901430 chr3R 15868918..15869112 1313..1507 975 100 Plus
chr3R 27901430 chr3R 15871481..15871663 3142..3324 915 100 Plus
chr3R 27901430 chr3R 15872355..15872528 3801..3974 870 100 Plus
chr3R 27901430 chr3R 15867221..15867370 349..498 750 100 Plus
chr3R 27901430 chr3R 15870259..15870408 2359..2508 750 100 Plus
chr3R 27901430 chr3R 15869167..15869306 1507..1646 700 100 Plus
chr3R 27901430 chr3R 15869887..15870022 2110..2245 680 100 Plus
chr3R 27901430 chr3R 15867872..15867998 670..796 635 100 Plus
chr3R 27901430 chr3R 15870890..15871015 2680..2805 630 100 Plus
chr3R 27901430 chr3R 15866695..15866814 1..120 600 100 Plus
chr3R 27901430 chr3R 15870076..15870193 2242..2359 590 100 Plus
chr3R 27901430 chr3R 15867041..15867157 233..349 585 100 Plus
chr3R 27901430 chr3R 15867562..15867677 498..613 580 100 Plus
chr3R 27901430 chr3R 15870461..15870576 2508..2623 580 100 Plus
chr3R 27901430 chr3R 15866872..15866985 120..233 555 99.1 Plus
chr3R 27901430 chr3R 15868465..15868561 1132..1228 485 100 Plus
chr3R 27901430 chr3R 15868616..15868706 1225..1315 455 100 Plus
chr3R 27901430 chr3R 15872580..15872669 3975..4064 420 97.8 Plus
chr3R 27901430 chr3R 15867760..15867815 614..669 280 100 Plus
chr3R 27901430 chr3R 15870776..15870831 2624..2679 280 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:48:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:19:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20045428..20045891 1646..2109 2320 100 Plus
3R 32079331 3R 20044118..20044454 796..1132 1685 100 Plus
3R 32079331 3R 20047136..20047475 2802..3141 1685 99.7 Plus
3R 32079331 3R 20048055..20048340 3517..3802 1430 100 Plus
3R 32079331 3R 20047795..20047990 3323..3518 980 100 Plus
3R 32079331 3R 20044980..20045174 1313..1507 975 100 Plus
3R 32079331 3R 20047543..20047725 3142..3324 915 100 Plus
3R 32079331 3R 20048402..20048575 3801..3974 870 100 Plus
3R 32079331 3R 20043283..20043432 349..498 750 100 Plus
3R 32079331 3R 20046321..20046470 2359..2508 750 100 Plus
3R 32079331 3R 20045229..20045368 1507..1646 700 100 Plus
3R 32079331 3R 20045949..20046084 2110..2245 680 100 Plus
3R 32079331 3R 20043934..20044060 670..796 635 100 Plus
3R 32079331 3R 20046952..20047077 2680..2805 630 100 Plus
3R 32079331 3R 20042757..20042876 1..120 600 100 Plus
3R 32079331 3R 20046138..20046255 2242..2359 590 100 Plus
3R 32079331 3R 20043103..20043219 233..349 585 100 Plus
3R 32079331 3R 20043624..20043739 498..613 580 100 Plus
3R 32079331 3R 20046523..20046638 2508..2623 580 100 Plus
3R 32079331 3R 20042934..20043047 120..233 570 100 Plus
3R 32079331 3R 20044527..20044623 1132..1228 485 100 Plus
3R 32079331 3R 20044678..20044768 1225..1315 455 100 Plus
3R 32079331 3R 20048627..20048717 3975..4065 455 100 Plus
3R 32079331 3R 20043822..20043877 614..669 280 100 Plus
3R 32079331 3R 20046838..20046893 2624..2679 280 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:58:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 19786259..19786722 1646..2109 2320 100 Plus
3R 31820162 3R 19784949..19785285 796..1132 1685 100 Plus
3R 31820162 3R 19787967..19788306 2802..3141 1685 99.7 Plus
3R 31820162 3R 19788886..19789171 3517..3802 1430 100 Plus
3R 31820162 3R 19788626..19788821 3323..3518 980 100 Plus
3R 31820162 3R 19785811..19786005 1313..1507 975 100 Plus
3R 31820162 3R 19788374..19788556 3142..3324 915 100 Plus
3R 31820162 3R 19789233..19789406 3801..3974 870 100 Plus
3R 31820162 3R 19787152..19787301 2359..2508 750 100 Plus
3R 31820162 3R 19784114..19784263 349..498 750 100 Plus
3R 31820162 3R 19786060..19786199 1507..1646 700 100 Plus
3R 31820162 3R 19786780..19786915 2110..2245 680 100 Plus
3R 31820162 3R 19784765..19784891 670..796 635 100 Plus
3R 31820162 3R 19787783..19787908 2680..2805 630 100 Plus
3R 31820162 3R 19783588..19783707 1..120 600 100 Plus
3R 31820162 3R 19786969..19787086 2242..2359 590 100 Plus
3R 31820162 3R 19783934..19784050 233..349 585 100 Plus
3R 31820162 3R 19787354..19787469 2508..2623 580 100 Plus
3R 31820162 3R 19784455..19784570 498..613 580 100 Plus
3R 31820162 3R 19783765..19783878 120..233 570 100 Plus
3R 31820162 3R 19785358..19785454 1132..1228 485 100 Plus
3R 31820162 3R 19789458..19789548 3975..4065 455 100 Plus
3R 31820162 3R 19785509..19785599 1225..1315 455 100 Plus
3R 31820162 3R 19787669..19787724 2624..2679 280 100 Plus
3R 31820162 3R 19784653..19784708 614..669 280 100 Plus
3R 31820162 3R 19787398..19787465 542..609 145 80.8 Plus
3R 31820162 3R 19784499..19784566 2552..2619 145 80.8 Plus
Blast to na_te.dros performed 2019-03-16 16:19:14
Subject Length Description Subject Range Query Range Score Percent Strand
Doc3-element 4740 Doc3-element DOC3 4740bp 4634..4680 1848..1802 118 72.3 Minus

GH13033.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:19:52 Download gff for GH13033.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 15866873..15866984 121..232 99 -> Plus
chr3R 15867041..15867157 233..349 100 -> Plus
chr3R 15867222..15867370 350..498 100 -> Plus
chr3R 15867563..15867677 499..613 100 -> Plus
chr3R 15867760..15867815 614..669 100 -> Plus
chr3R 15867872..15867997 670..795 100 -> Plus
chr3R 15869168..15869305 1508..1645 100 -> Plus
chr3R 15872580..15872669 3975..4064 97   Plus
chr3R 15866695..15866814 1..120 100 -> Plus
chr3R 15868056..15868391 796..1131 100 -> Plus
chr3R 15868465..15868559 1132..1226 100 -> Plus
chr3R 15868618..15868704 1227..1313 100 -> Plus
chr3R 15868919..15869112 1314..1507 100 -> Plus
chr3R 15869366..15869829 1646..2109 94 -> Plus
chr3R 15869887..15870019 2110..2242 100 -> Plus
chr3R 15870077..15870193 2243..2359 100 -> Plus
chr3R 15870260..15870408 2360..2508 100 -> Plus
chr3R 15870462..15870576 2509..2623 100 -> Plus
chr3R 15870776..15870831 2624..2679 100 -> Plus
chr3R 15870890..15871015 2680..2805 100 -> Plus
chr3R 15871078..15871413 2806..3141 99 -> Plus
chr3R 15871481..15871666 3142..3326 98 -> Plus
chr3R 15871751..15871941 3327..3517 100 -> Plus
chr3R 15872008..15872291 3518..3801 98 -> Plus
chr3R 15872356..15872528 3802..3974 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:39:31 Download gff for GH13033.complete
Subject Subject Range Query Range Percent Splice Strand
Indy-2-RB 1..1689 98..1786 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:27:21 Download gff for GH13033.complete
Subject Subject Range Query Range Percent Splice Strand
Indy-2-RB 1..1689 98..1786 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:08:26 Download gff for GH13033.complete
Subject Subject Range Query Range Percent Splice Strand
Indy-2-RA 1..1689 98..1786 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:00:37 Download gff for GH13033.complete
Subject Subject Range Query Range Percent Splice Strand
Indy-2-RB 1..1689 98..1786 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:25:41 Download gff for GH13033.complete
Subject Subject Range Query Range Percent Splice Strand
Indy-2-RA 1..1689 98..1786 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:26:49 Download gff for GH13033.complete
Subject Subject Range Query Range Percent Splice Strand
CG33934-RB 1..4065 1..4064 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:27:21 Download gff for GH13033.complete
Subject Subject Range Query Range Percent Splice Strand
CG33934-RE 1..4064 1..4064 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:08:26 Download gff for GH13033.complete
Subject Subject Range Query Range Percent Splice Strand
Indy-2-RA 1..4064 1..4064 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:00:37 Download gff for GH13033.complete
Subject Subject Range Query Range Percent Splice Strand
CG33934-RB 1..4065 1..4064 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:25:41 Download gff for GH13033.complete
Subject Subject Range Query Range Percent Splice Strand
CG33934-RE 1..4064 1..4064 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:19:52 Download gff for GH13033.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20047543..20047728 3142..3326 98 -> Plus
3R 20043625..20043739 499..613 100 -> Plus
3R 20043822..20043877 614..669 100 -> Plus
3R 20043934..20044059 670..795 100 -> Plus
3R 20045230..20045367 1508..1645 100 -> Plus
3R 20042757..20042876 1..120 100 -> Plus
3R 20042935..20043046 121..232 100 -> Plus
3R 20043103..20043219 233..349 100 -> Plus
3R 20043284..20043432 350..498 100 -> Plus
3R 20044118..20044453 796..1131 100 -> Plus
3R 20044527..20044621 1132..1226 100 -> Plus
3R 20044680..20044766 1227..1313 100 -> Plus
3R 20044981..20045174 1314..1507 100 -> Plus
3R 20045428..20045891 1646..2109 100 -> Plus
3R 20045949..20046081 2110..2242 100 -> Plus
3R 20046139..20046255 2243..2359 100 -> Plus
3R 20046322..20046470 2360..2508 100 -> Plus
3R 20046524..20046638 2509..2623 100 -> Plus
3R 20046838..20046893 2624..2679 100 -> Plus
3R 20046952..20047077 2680..2805 100 -> Plus
3R 20047140..20047475 2806..3141 100 -> Plus
3R 20047799..20047989 3327..3517 100 -> Plus
3R 20048056..20048339 3518..3801 100 -> Plus
3R 20048403..20048575 3802..3974 100 -> Plus
3R 20048627..20048716 3975..4064 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:19:52 Download gff for GH13033.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20047543..20047728 3142..3326 98 -> Plus
3R 20043625..20043739 499..613 100 -> Plus
3R 20043822..20043877 614..669 100 -> Plus
3R 20043934..20044059 670..795 100 -> Plus
3R 20045230..20045367 1508..1645 100 -> Plus
3R 20042757..20042876 1..120 100 -> Plus
3R 20042935..20043046 121..232 100 -> Plus
3R 20043103..20043219 233..349 100 -> Plus
3R 20043284..20043432 350..498 100 -> Plus
3R 20044118..20044453 796..1131 100 -> Plus
3R 20044527..20044621 1132..1226 100 -> Plus
3R 20044680..20044766 1227..1313 100 -> Plus
3R 20044981..20045174 1314..1507 100 -> Plus
3R 20045428..20045891 1646..2109 100 -> Plus
3R 20045949..20046081 2110..2242 100 -> Plus
3R 20046139..20046255 2243..2359 100 -> Plus
3R 20046322..20046470 2360..2508 100 -> Plus
3R 20046524..20046638 2509..2623 100 -> Plus
3R 20046838..20046893 2624..2679 100 -> Plus
3R 20046952..20047077 2680..2805 100 -> Plus
3R 20047140..20047475 2806..3141 100 -> Plus
3R 20047799..20047989 3327..3517 100 -> Plus
3R 20048056..20048339 3518..3801 100 -> Plus
3R 20048403..20048575 3802..3974 100 -> Plus
3R 20048627..20048716 3975..4064 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:19:52 Download gff for GH13033.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20047543..20047728 3142..3326 98 -> Plus
3R 20043625..20043739 499..613 100 -> Plus
3R 20043822..20043877 614..669 100 -> Plus
3R 20043934..20044059 670..795 100 -> Plus
3R 20045230..20045367 1508..1645 100 -> Plus
3R 20042757..20042876 1..120 100 -> Plus
3R 20042935..20043046 121..232 100 -> Plus
3R 20043103..20043219 233..349 100 -> Plus
3R 20043284..20043432 350..498 100 -> Plus
3R 20044118..20044453 796..1131 100 -> Plus
3R 20044527..20044621 1132..1226 100 -> Plus
3R 20044680..20044766 1227..1313 100 -> Plus
3R 20044981..20045174 1314..1507 100 -> Plus
3R 20045428..20045891 1646..2109 100 -> Plus
3R 20045949..20046081 2110..2242 100 -> Plus
3R 20046139..20046255 2243..2359 100 -> Plus
3R 20046322..20046470 2360..2508 100 -> Plus
3R 20046524..20046638 2509..2623 100 -> Plus
3R 20046838..20046893 2624..2679 100 -> Plus
3R 20046952..20047077 2680..2805 100 -> Plus
3R 20047140..20047475 2806..3141 100 -> Plus
3R 20047799..20047989 3327..3517 100 -> Plus
3R 20048056..20048339 3518..3801 100 -> Plus
3R 20048403..20048575 3802..3974 100 -> Plus
3R 20048627..20048716 3975..4064 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:08:26 Download gff for GH13033.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15869656..15869781 670..795 100 -> Plus
arm_3R 15873265..15873450 3142..3326 98 -> Plus
arm_3R 15873521..15873711 3327..3517 100 -> Plus
arm_3R 15868479..15868598 1..120 100 -> Plus
arm_3R 15868657..15868768 121..232 100 -> Plus
arm_3R 15868825..15868941 233..349 100 -> Plus
arm_3R 15869006..15869154 350..498 100 -> Plus
arm_3R 15869347..15869461 499..613 100 -> Plus
arm_3R 15869544..15869599 614..669 100 -> Plus
arm_3R 15869840..15870175 796..1131 100 -> Plus
arm_3R 15870249..15870343 1132..1226 100 -> Plus
arm_3R 15870402..15870488 1227..1313 100 -> Plus
arm_3R 15870703..15870896 1314..1507 100 -> Plus
arm_3R 15870952..15871089 1508..1645 100 -> Plus
arm_3R 15871150..15871613 1646..2109 100 -> Plus
arm_3R 15871671..15871803 2110..2242 100 -> Plus
arm_3R 15871861..15871977 2243..2359 100 -> Plus
arm_3R 15872044..15872192 2360..2508 100 -> Plus
arm_3R 15872246..15872360 2509..2623 100 -> Plus
arm_3R 15872560..15872615 2624..2679 100 -> Plus
arm_3R 15872674..15872799 2680..2805 100 -> Plus
arm_3R 15872862..15873197 2806..3141 100 -> Plus
arm_3R 15873778..15874061 3518..3801 100 -> Plus
arm_3R 15874125..15874297 3802..3974 100 -> Plus
arm_3R 15874349..15874438 3975..4064 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:38:27 Download gff for GH13033.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19789234..19789406 3802..3974 100 -> Plus
3R 19789458..19789547 3975..4064 100   Plus
3R 19788374..19788559 3142..3326 98 -> Plus
3R 19788630..19788820 3327..3517 100 -> Plus
3R 19788887..19789170 3518..3801 100 -> Plus
3R 19784949..19785284 796..1131 100 -> Plus
3R 19785358..19785452 1132..1226 100 -> Plus
3R 19785511..19785597 1227..1313 100 -> Plus
3R 19785812..19786005 1314..1507 100 -> Plus
3R 19786061..19786198 1508..1645 100 -> Plus
3R 19786259..19786722 1646..2109 100 -> Plus
3R 19786780..19786912 2110..2242 100 -> Plus
3R 19786970..19787086 2243..2359 100 -> Plus
3R 19787153..19787301 2360..2508 100 -> Plus
3R 19787355..19787469 2509..2623 100 -> Plus
3R 19787669..19787724 2624..2679 100 -> Plus
3R 19787783..19787908 2680..2805 100 -> Plus
3R 19787971..19788306 2806..3141 100 -> Plus
3R 19783588..19783707 1..120 100 -> Plus
3R 19783766..19783877 121..232 100 -> Plus
3R 19783934..19784050 233..349 100 -> Plus
3R 19784115..19784263 350..498 100 -> Plus
3R 19784456..19784570 499..613 100 -> Plus
3R 19784653..19784708 614..669 100 -> Plus
3R 19784765..19784890 670..795 100 -> Plus

GH13033.pep Sequence

Translation from 97 to 1785

> GH13033.pep
MAEPGEQRKFVLGRCCIFHWRGKASIIIPLITLPILIYGFQTDMAEFKCL
WLIVTMALLWITETLPIYVTALFPLVFCPLLGLVNASIVCKQYFTDTIVV
FLGGLIVALGIEYSNLHTRIALRVIRIVGGSPRRLFVGLMSVSTFMGLWI
SNSAGTAMMCPIVKALVNELDTNKIFPVYMTQEEEPVEEGEPPHPSKITV
AFYAGIAYASSIGGLGTLIGTGTNLVFRGIYTERFPTSTVEITFANFMFY
SIPLMVIVNVTLVIIAFLITHMGLFRPNSKTGKIIAEANTNRKLMEDVLR
QRHIDLGPMSCHEIQMAIAFAFMIVLLITRKPGFVPGWSDLINRKVVGSA
SGLSFIVLLIFALPTQYTFFKYCCGKGPFTAQAIDAILSWEYVLRNIPWG
LLFLLGGGFALAVASRETGLNIMISKAMQVLIGLPNIVVQSITFVLANFF
SAFNANVVVANIVLPILCEMSLALELHPLILTLPACLGISMVYFLPVSTP
PNAIVTQYAHIKTKYFACCGIVPTIIGISVALVNTNTWGLIIFPESKSFP
DWAKEIKNQTKI*

GH13033.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:04:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17635-PA 556 GF17635-PA 1..555 1..553 1600 53.5 Plus
Dana\GF10804-PA 585 GF10804-PA 31..577 13..554 1338 46 Plus
Dana\GF14052-PA 458 GF14052-PA 15..439 79..526 279 22.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:04:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23703-PA 562 GG23703-PA 1..562 1..562 2337 79.9 Plus
Dere\GG23714-PA 505 GG23714-PA 1..505 50..554 1485 54.7 Plus
Dere\GG15722-PA 590 GG15722-PA 40..578 19..554 1305 46.5 Plus
Dere\GG10343-PA 531 GG10343-PA 14..529 1..535 336 23.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:04:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17290-PA 556 GH17290-PA 3..556 6..555 1673 56 Plus
Dgri\GH17192-PA 653 GH17192-PA 20..585 2..561 1286 44.4 Plus
Dgri\GH11690-PA 469 GH11690-PA 11..445 75..525 379 25.5 Plus
Dgri\GH17301-PA 81 GH17301-PA 10..72 148..234 190 48.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:08:32
Subject Length Description Subject Range Query Range Score Percent Strand
Indy-2-PB 562 CG33933-PB 1..562 1..562 2897 100 Plus
Indy-2-PA 562 CG33933-PA 1..562 1..562 2897 100 Plus
CG33934-PE 556 CG33934-PE 16..555 14..553 1643 55 Plus
CG33934-PD 555 CG33934-PD 16..554 14..553 1625 54.8 Plus
CG33934-PC 555 CG33934-PC 16..554 14..553 1625 54.8 Plus
Indy-PD 572 CG3979-PD 22..560 19..554 1368 47.1 Plus
Indy-PA 572 CG3979-PA 22..560 19..554 1368 47.1 Plus
Indy-PC 572 CG3979-PC 22..560 19..554 1368 47.1 Plus
Indy-PB 590 CG3979-PB 40..578 19..554 1368 47.1 Plus
CG7309-PC 528 CG7309-PC 24..510 16..525 409 24.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:04:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13959-PA 643 GI13959-PA 22..572 19..562 1286 45 Plus
Dmoj\GI22444-PA 472 GI22444-PA 1..465 56..520 1277 52 Plus
Dmoj\GI17135-PA 454 GI17135-PA 1..433 84..525 277 23.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:04:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12087-PA 559 GL12087-PA 1..558 1..555 1669 56 Plus
Dper\GL12086-PA 580 GL12086-PA 1..568 1..561 1598 55.8 Plus
Dper\GL25253-PA 558 GL25253-PA 30..547 14..554 1109 43.3 Plus
Dper\GL19025-PA 534 GL19025-PA 16..514 3..526 449 23.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:04:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17201-PA 559 GA17201-PA 1..558 1..555 1661 55.6 Plus
Dpse\Indy-2-PA 580 GA26188-PA 1..568 1..561 1602 56 Plus
Dpse\GA23740-PA 587 GA23740-PA 30..576 14..554 1288 46.2 Plus
Dpse\GA20251-PA 534 GA20251-PA 16..514 3..526 440 23.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:04:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17692-PA 562 GM17692-PA 1..562 1..562 2558 91.8 Plus
Dsec\GM17693-PA 518 GM17693-PA 11..517 47..553 1502 53.5 Plus
Dsec\GM14919-PA 590 GM14919-PA 22..578 3..554 1320 46.5 Plus
Dsec\GM11292-PA 528 GM11292-PA 14..505 1..520 377 25.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:04:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19335-PA 562 GD19335-PA 1..562 1..562 2452 91.8 Plus
Dsim\GD19336-PA 518 GD19336-PA 11..517 47..553 1489 54 Plus
Dsim\GD12325-PA 1005 GD12325-PA 437..993 3..554 1327 46.5 Plus
Dsim\GD22211-PA 249 GD22211-PA 9..228 296..522 210 26.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:04:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11006-PA 554 GJ11006-PA 2..552 5..551 1624 54.4 Plus
Dvir\GJ13740-PA 643 GJ13740-PA 22..572 19..562 1273 44.6 Plus
Dvir\GJ16173-PA 529 GJ16173-PA 14..526 3..538 412 25.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:04:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22372-PA 514 GK22372-PA 1..498 56..553 1574 58.2 Plus
Dwil\GK20442-PA 572 GK20442-PA 14..561 14..554 1277 45.5 Plus
Dwil\GK22371-PA 342 GK22371-PA 14..238 14..238 811 64.9 Plus
Dwil\GK15228-PA 558 GK15228-PA 15..539 3..544 429 26.2 Plus
Dwil\GK22371-PA 342 GK22371-PA 236..331 465..560 276 52.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:04:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25645-PA 555 GE25645-PA 1..555 8..562 2337 83.6 Plus
Dyak\GE25646-PA 723 GE25646-PA 11..514 47..551 1490 53.7 Plus
Dyak\GE22053-PA 590 GE22053-PA 22..578 3..554 1311 46.2 Plus
Dyak\GE25646-PA 723 GE25646-PA 507..722 336..553 526 45.9 Plus
Dyak\GE13176-PA 460 GE13176-PA 11..439 75..522 333 25.2 Plus

GH13033.hyp Sequence

Translation from 97 to 1785

> GH13033.hyp
MAEPGEQRKFVLGRCCIFHWRGKASIIIPLITLPILIYGFQTDMAEFKCL
WLIVTMALLWITETLPIYVTALFPLVFCPLLGLVNASIVCKQYFTDTIVV
FLGGLIVALGIEYSNLHTRIALRVIRIVGGSPRRLFVGLMSVSTFMGLWI
SNSAGTAMMCPIVKALVNELDTNKIFPVYMTQEEEPVEEGEPPHPSKITV
AFYAGIAYASSIGGLGTLIGTGTNLVFRGIYTERFPTSTVEITFANFMFY
SIPLMVIVNVTLVIIAFLITHMGLFRPNSKTGKIIAEANTNRKLMEDVLR
QRHIDLGPMSCHEIQMAIAFAFMIVLLITRKPGFVPGWSDLINRKVVGSA
SGLSFIVLLIFALPTQYTFFKYCCGKGPFTAQAIDAILSWEYVLRNIPWG
LLFLLGGGFALAVASRETGLNIMISKAMQVLIGLPNIVVQSITFVLANFF
SAFNANVVVANIVLPILCEMSLALELHPLILTLPACLGISMVYFLPVSTP
PNAIVTQYAHIKTKYFACCGIVPTIIGISVALVNTNTWGLIIFPESKSFP
DWAKEIKNQTKI*

GH13033.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:38:21
Subject Length Description Subject Range Query Range Score Percent Strand
Indy-2-PB 562 CG33933-PB 1..562 1..562 2897 100 Plus
Indy-2-PA 562 CG33933-PA 1..562 1..562 2897 100 Plus
CG33934-PE 556 CG33934-PE 16..555 14..553 1643 55 Plus
CG33934-PD 555 CG33934-PD 16..554 14..553 1625 54.8 Plus
CG33934-PC 555 CG33934-PC 16..554 14..553 1625 54.8 Plus