Clone GH13040 Report

Search the DGRC for GH13040

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:130
Well:40
Vector:pOT2
Associated Gene/Transcriptmlt-RA
Protein status:GH13040.pep: gold
Preliminary Size:1896
Sequenced Size:2192

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12214 2001-01-01 Release 2 assignment
CG12214 2001-07-04 Blastp of sequenced clone
CG12214 2003-01-01 Sim4 clustering to Release 3
CG12214 2008-04-29 Release 5.5 accounting
CG12214 2008-08-15 Release 5.9 accounting
CG12214 2008-12-18 5.12 accounting

Clone Sequence Records

GH13040.complete Sequence

2192 bp (2192 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051458

> GH13040.complete
GTGGCATTGCGAGCGGACGGAGAGTGATTCGGAAAAGCAGAATAGCTGAA
AAGCGGAAAAGCTGGCCACTGCGACAAAGGTTAAGCAGCAGCGACAAACA
CAAAACGACAACAAAGGGAAAACGCATCTAAGCTGGCGCAGAGATCCCAA
AAAAAATACACTCCAAAAACCAGCCCAGACCAACGCACTTTGGGTTTCTT
TGTTACGATCTTTTTAACATCGAGTCGAAGCACGGAGTCAAAAAAGTCTT
CGAATTAGTGCGCAATATTTAACGGAATAACAAGAAACACAACGAACGCG
AAACGTGCGCAATAATTTGTTTAAAATCAATGAAGACTGCAACTGCGCAA
AACTGAAAAATTGCATCATAGCCAACACAGAACGGGGCAGGGAAAAGTCT
ATGAGCGCGGAAAAGTGGAAAATCAATAGGGGGCAGAATAAGTAAAGCCC
GAATAAATATAGGGGGATCCAAAACCAATCCCATCTAAGTAATCATCAAA
AGTGCAAGTTCGCTATGCCTTCCCTTTTGGAGGCGCTGGAGCGCAAGTAC
TTCGCAGAATGCGAATTCGAGAATGCCCACCAACCGGAACTCCACAAACG
AAGCGACCTGCCCAATGACTTTACGGTCACCAAGTGCGGCGGACGCATGG
AGTTCTCCATCTTCATACCCCGCCTATCCCCGCTGACCAGTGTGCCAGCC
TTGCTAGTCCTCAACGACTGTGACATCGATTCGGCCGGGGACTTCGACAG
CATCCGGGAGAAGTGCCAGCGGGTGAGGGAACTGGATCTGGCCCAGAACA
AGCTGAGCGACTGGTCGGAGGTCTTCAGCATACTGGAGCACATGCCGCGC
ATTGAGTTCCTCAACCTGAGCAAGAACCAGCTGGCCAGTCCGATCGGCAC
GTTGCCCACGGCTCCCACGATCAATCTGAAGAGCCTGGTGCTGAACGGCA
CCTACTTGGACTGGGCCTGCGTGGATACCCTGCTGAAGAATTTGCCCGTG
CTCCAGGAACTGCATCTCAGCCTGAACAACTACAGGCAGGTGCTGATCGA
TGCTGAGGAGGCGGAACAGCGGCTGCAGGAAACGGAAACGCCAGAGGAAA
CCGAGCGGCGAATCACCAAAGCACATCCTGCTCTAAAGACCCTGCATTTC
ACCGGTAATCCCGTCGAGCACTGGCAGGAAATCTGCCGGCTGGGCCGGCT
GTTTCCCAACCTCGAGGCCCTCGTTCTGGCAGACTGTCCCATCAAATCGC
TGCAGGCCGAGGAGAGCAGCGAGACACATAGATACTTCCCCAGCCTGAGG
CTTTTGAACCTAAGTTCCGCGCAACTGGATAGCTGGGCGGCCATCGATGA
GCTGGCCAAGTTTAGCGAGCTACGCAACCTCCGTGTGAAACACTGGCCCC
TCTGGGAAAGTCTGGAGTGCACGGAGCACGAGAGAAGGCAGCTCCTGATA
GCCAGGCTGCCCAACGTGGAGATGCTCAACGGAGGCGGCAAGATCAGTAG
CGATGAGCGCGTCGACTCGGAGCGAGCTTTTGTCAGATACTATATGGACA
AGCCGGAGGAGGAACGGCCTGCGCGCTACCAAGAGCTTCTGCAGATCCAC
GGCAAGCTGGATCCCTTGGTCAATGTGAGCCTGAAACCAGACAAGCGGGT
CAAGGTCCTGTTCACCTACAACGATGTGAGCGAGAGCCGGTTCGTGGACA
TCTATCTGACCGTCAACGATTTGAAGGTGAAGCTGGAGAAGCTGGTGGGT
CTGGCGCCCAACAAGATGCGCCTCTACTATCTGGATCAGGACTACAAGGA
ATTCGGGCCGGAGGAGATGAGGTACCCCAACAAGCAGTTGTACAGCTACA
ACATCCAGTCGGGCGACGAGATCATCATCGATGCCAAGAAGTGAGGCGCG
ACGTATGGGCTACATGCTTCCGTATCTGGAGAGGATTACCATTAACCCGA
ACCGCCCTTCGTCCCCCGCCTGGTGCTACAACTTGTGATCTTGTACACGA
ATCATTTACATTTACTTTACTCTACTGTTAGTGCCGTTCTGTTCTCCGCA
GCGAACCCCTGTGTACATACGTTCTGAAAATGGCCAAGCGAGCATTACTG
CGCACCCACATCGTATATTTTAATTATTACTGCCTAACCTAAGCCACACA
CAAAATACAAATACAAACCACCACAAAAAAAAAAAAAAAAAA

GH13040.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:36:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG12214-RB 2511 CG12214-RB 315..2509 1..2192 10875 99.7 Plus
CG12214-RA 2197 CG12214-RA 1..2195 1..2192 10875 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:27:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 6043932..6046110 2174..1 10645 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:48:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:27:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10156372..10158566 2192..1 10865 99.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:58:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 10157571..10159765 2192..1 10875 99.7 Minus
Blast to na_te.dros performed 2019-03-16 10:27:27
Subject Length Description Subject Range Query Range Score Percent Strand
McClintock 6450 McClintock McCLINTOCK 6450bp 874..1094 240..461 133 54 Plus

GH13040.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:28:21 Download gff for GH13040.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 6043932..6046110 1..2174 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:39:34 Download gff for GH13040.complete
Subject Subject Range Query Range Percent Splice Strand
CG12214-RA 1..1380 515..1894 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:27:23 Download gff for GH13040.complete
Subject Subject Range Query Range Percent Splice Strand
CG12214-RA 1..1380 515..1894 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:01:51 Download gff for GH13040.complete
Subject Subject Range Query Range Percent Splice Strand
mlt-RB 1..1380 515..1894 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:00:38 Download gff for GH13040.complete
Subject Subject Range Query Range Percent Splice Strand
CG12214-RA 1..1380 515..1894 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:08:58 Download gff for GH13040.complete
Subject Subject Range Query Range Percent Splice Strand
mlt-RB 1..1380 515..1894 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:26:50 Download gff for GH13040.complete
Subject Subject Range Query Range Percent Splice Strand
CG12214-RA 1..2177 1..2174 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:27:22 Download gff for GH13040.complete
Subject Subject Range Query Range Percent Splice Strand
CG12214-RA 1..2177 1..2174 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:01:51 Download gff for GH13040.complete
Subject Subject Range Query Range Percent Splice Strand
mlt-RB 366..2542 1..2174 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:00:38 Download gff for GH13040.complete
Subject Subject Range Query Range Percent Splice Strand
CG12214-RA 1..2177 1..2174 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:08:58 Download gff for GH13040.complete
Subject Subject Range Query Range Percent Splice Strand
mlt-RB 366..2542 1..2174 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:28:21 Download gff for GH13040.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10156390..10158566 1..2174 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:28:21 Download gff for GH13040.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10156390..10158566 1..2174 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:28:21 Download gff for GH13040.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10156390..10158566 1..2174 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:01:51 Download gff for GH13040.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6043895..6046071 1..2174 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:38:29 Download gff for GH13040.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10157589..10159765 1..2174 99   Minus

GH13040.pep Sequence

Translation from 514 to 1893

> GH13040.pep
MPSLLEALERKYFAECEFENAHQPELHKRSDLPNDFTVTKCGGRMEFSIF
IPRLSPLTSVPALLVLNDCDIDSAGDFDSIREKCQRVRELDLAQNKLSDW
SEVFSILEHMPRIEFLNLSKNQLASPIGTLPTAPTINLKSLVLNGTYLDW
ACVDTLLKNLPVLQELHLSLNNYRQVLIDAEEAEQRLQETETPEETERRI
TKAHPALKTLHFTGNPVEHWQEICRLGRLFPNLEALVLADCPIKSLQAEE
SSETHRYFPSLRLLNLSSAQLDSWAAIDELAKFSELRNLRVKHWPLWESL
ECTEHERRQLLIARLPNVEMLNGGGKISSDERVDSERAFVRYYMDKPEEE
RPARYQELLQIHGKLDPLVNVSLKPDKRVKVLFTYNDVSESRFVDIYLTV
NDLKVKLEKLVGLAPNKMRLYYLDQDYKEFGPEEMRYPNKQLYSYNIQSG
DEIIIDAKK*

GH13040.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:05:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12136-PA 469 GF12136-PA 1..469 1..459 2216 90 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25228-PA 459 GG25228-PA 1..459 1..459 2393 98 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20121-PA 496 GH20121-PA 1..496 1..459 2013 77.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
mlt-PC 459 CG12214-PC 1..459 1..459 2390 100 Plus
mlt-PA 459 CG12214-PA 1..459 1..459 2390 100 Plus
mlt-PB 459 CG12214-PB 1..459 1..459 2390 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:05:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20213-PA 488 GI20213-PA 1..488 1..459 2055 80.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:05:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10489-PA 462 GL10489-PA 1..462 1..459 2088 84.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:05:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11483-PA 466 GA11483-PA 1..466 1..459 2121 84.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:05:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20547-PA 459 GM20547-PA 1..459 1..459 2430 99.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:05:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD26002-PA 459 GD26002-PA 1..459 1..459 2425 99.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:05:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20163-PA 491 GJ20163-PA 1..491 1..459 2032 78.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:05:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10690-PA 454 GK10690-PA 1..454 1..459 1967 80.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:05:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21743-PA 459 GE21743-PA 1..459 1..459 2402 98.3 Plus

GH13040.hyp Sequence

Translation from 514 to 1893

> GH13040.hyp
MPSLLEALERKYFAECEFENAHQPELHKRSDLPNDFTVTKCGGRMEFSIF
IPRLSPLTSVPALLVLNDCDIDSAGDFDSIREKCQRVRELDLAQNKLSDW
SEVFSILEHMPRIEFLNLSKNQLASPIGTLPTAPTINLKSLVLNGTYLDW
ACVDTLLKNLPVLQELHLSLNNYRQVLIDAEEAEQRLQETETPEETERRI
TKAHPALKTLHFTGNPVEHWQEICRLGRLFPNLEALVLADCPIKSLQAEE
SSETHRYFPSLRLLNLSSAQLDSWAAIDELAKFSELRNLRVKHWPLWESL
ECTEHERRQLLIARLPNVEMLNGGGKISSDERVDSERAFVRYYMDKPEEE
RPARYQELLQIHGKLDPLVNVSLKPDKRVKVLFTYNDVSESRFVDIYLTV
NDLKVKLEKLVGLAPNKMRLYYLDQDYKEFGPEEMRYPNKQLYSYNIQSG
DEIIIDAKK*

GH13040.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
mlt-PC 459 CG12214-PC 1..459 1..459 2390 100 Plus
mlt-PA 459 CG12214-PA 1..459 1..459 2390 100 Plus
mlt-PB 459 CG12214-PB 1..459 1..459 2390 100 Plus