Clone GH13132 Report

Search the DGRC for GH13132

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:131
Well:32
Vector:pOT2
Associated Gene/TranscriptCG11509-RA
Protein status:GH13132.pep: gold
Preliminary Size:888
Sequenced Size:761

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11509 2001-01-01 Release 2 assignment
CG11509 2001-10-10 Blastp of sequenced clone
CG11509 2003-01-01 Sim4 clustering to Release 3

Clone Sequence Records

GH13132.complete Sequence

761 bp (761 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060691

> GH13132.complete
CGATATTTAAAAATAAACTAAACTACAATAACAGCAACAGTAACAGTGCA
GTAACTACATGGCTATACATACATAAGTAAAATAGCAAATCCGAGGAAGT
AAGAGCAAATGACAGCTTACCCCCAGCATTCAATCGAATATGCATAGAAA
TAGAAACCGCAACCGAAACAGAAACCGAAACCAAAAGGTGTTGAGTGCAA
AAAGGATGCGGAATGGACGTGGATTCTGGTGTTCCAAGATGTTCCATTCG
GCTCCTTTCTACGCTCAGGATCAAGGACAAGCCAAATCAGTTAAATATCT
TATCTAGTTGGAAACACTCACTCGTACACAAACGCTTGCATACTTATAGC
TGTAGAAATATAACCCATACCAATATCAGTAACTACACCCACACCCACAA
CCACAGCCACAGCCACACCGATCGAAGATCAAGTCAGAATTCAAAAGGGA
AAACCAACAGCAGTAGTATGAATACAAAAAGCAACAGACAGAAGTTTCCT
TTGGCGACAATTTCGAATTGTTTTTCCCATAAGCTCGAACTTGAACTCGA
ACTCAAACTACAATAAAAACTATTAAGTTTTCCACTCTAGCCTAGTAAGA
AATGTACATTTTTGTCTCCTGTACGTTCACTTGTACATATTATAAGCAAG
GTGCCAGCACTAGAACTAACCCAAGCGGCAAGCCACTCCTACACACACAT
ATATATGCAAAGCAAAGTAACGAAATAACAAAAACAAAAAACAAAAAAAA
AAAAAAAAAAA

GH13132.complete Blast Records

Blast to MB8.fasta performed on 2010-07-15 20:12:31 has no hits.
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:09:11
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 1546154..1546895 1..742 3695 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:48:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:09:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1652321..1653079 1..759 3750 99.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:36:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 1660419..1661177 1..759 3750 99.6 Plus
Blast to na_te.dros performed 2019-03-15 18:09:10
Subject Length Description Subject Range Query Range Score Percent Strand
McClintock 6450 McClintock McCLINTOCK 6450bp 1120..1303 5..180 117 56.5 Plus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 1107..1154 693..740 114 70.8 Plus
BS 5142 BS BS 5142bp 1932..1984 387..440 114 70.4 Plus
F-element 4708 F-element F 4708bp 4669..4708 701..741 112 78 Plus

GH13132.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:09:48 Download gff for GH13132.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 1546154..1546875 1..722 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:54:44 Download gff for GH13132.complete
Subject Subject Range Query Range Percent Splice Strand
CG11509-RA 1..354 213..566 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 20:21:18 has no hits.
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:54:24 Download gff for GH13132.complete
Subject Subject Range Query Range Percent Splice Strand
CG11509-RA 1..354 213..566 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:54:44 Download gff for GH13132.complete
Subject Subject Range Query Range Percent Splice Strand
CG11509-RA 1..722 1..722 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 20:21:18 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:54:24 Download gff for GH13132.complete
Subject Subject Range Query Range Percent Splice Strand
CG11509-RA 1..722 1..722 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:09:48 Download gff for GH13132.complete
Subject Subject Range Query Range Percent Splice Strand
X 1652321..1653042 1..722 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:09:48 Download gff for GH13132.complete
Subject Subject Range Query Range Percent Splice Strand
X 1652321..1653042 1..722 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:09:48 Download gff for GH13132.complete
Subject Subject Range Query Range Percent Splice Strand
X 1652321..1653042 1..722 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:54:44 Download gff for GH13132.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1546354..1547075 1..722 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:57:57 Download gff for GH13132.complete
Subject Subject Range Query Range Percent Splice Strand
X 1660419..1661140 1..722 100   Plus

GH13132.pep Sequence

Translation from 212 to 565

> GH13132.pep
MDVDSGVPRCSIRLLSTLRIKDKPNQLNILSSWKHSLVHKRLHTYSCRNI
THTNISNYTHTHNHSHSHTDRRSSQNSKGKTNSSSMNTKSNRQKFPLATI
SNCFSHKLELELELKLQ*
Sequence GH13132.pep has no blast hits.

GH13132.hyp Sequence

Translation from 212 to 565

> GH13132.hyp
MDVDSGVPRCSIRLLSTLRIKDKPNQLNILSSWKHSLVHKRLHTYSCRNI
THTNISNYTHTHNHSHSHTDRRSSQNSKGKTNSSSMNTKSNRQKFPLATI
SNCFSHKLELELELKLQ*

GH13132.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:38:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG11509-PA 117 CG11509-PA 1..117 1..117 620 100 Plus