GH13132.complete Sequence
761 bp (761 high quality bases) assembled on 2001-10-10
GenBank Submission: AY060691
> GH13132.complete
CGATATTTAAAAATAAACTAAACTACAATAACAGCAACAGTAACAGTGCA
GTAACTACATGGCTATACATACATAAGTAAAATAGCAAATCCGAGGAAGT
AAGAGCAAATGACAGCTTACCCCCAGCATTCAATCGAATATGCATAGAAA
TAGAAACCGCAACCGAAACAGAAACCGAAACCAAAAGGTGTTGAGTGCAA
AAAGGATGCGGAATGGACGTGGATTCTGGTGTTCCAAGATGTTCCATTCG
GCTCCTTTCTACGCTCAGGATCAAGGACAAGCCAAATCAGTTAAATATCT
TATCTAGTTGGAAACACTCACTCGTACACAAACGCTTGCATACTTATAGC
TGTAGAAATATAACCCATACCAATATCAGTAACTACACCCACACCCACAA
CCACAGCCACAGCCACACCGATCGAAGATCAAGTCAGAATTCAAAAGGGA
AAACCAACAGCAGTAGTATGAATACAAAAAGCAACAGACAGAAGTTTCCT
TTGGCGACAATTTCGAATTGTTTTTCCCATAAGCTCGAACTTGAACTCGA
ACTCAAACTACAATAAAAACTATTAAGTTTTCCACTCTAGCCTAGTAAGA
AATGTACATTTTTGTCTCCTGTACGTTCACTTGTACATATTATAAGCAAG
GTGCCAGCACTAGAACTAACCCAAGCGGCAAGCCACTCCTACACACACAT
ATATATGCAAAGCAAAGTAACGAAATAACAAAAACAAAAAACAAAAAAAA
AAAAAAAAAAA
GH13132.complete Blast Records
Blast to MB8.fasta performed on 2010-07-15 20:12:31 has no hits.
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:09:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chrX | 22417052 | chrX | 1546154..1546895 | 1..742 | 3695 | 99.9 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:48:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:09:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1652321..1653079 | 1..759 | 3750 | 99.6 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:36:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23527363 | X | 1660419..1661177 | 1..759 | 3750 | 99.6 | Plus |
Blast to na_te.dros performed 2019-03-15 18:09:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
McClintock | 6450 | McClintock McCLINTOCK 6450bp | 1120..1303 | 5..180 | 117 | 56.5 | Plus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 1107..1154 | 693..740 | 114 | 70.8 | Plus |
BS | 5142 | BS BS 5142bp | 1932..1984 | 387..440 | 114 | 70.4 | Plus |
F-element | 4708 | F-element F 4708bp | 4669..4708 | 701..741 | 112 | 78 | Plus |
GH13132.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:09:48 Download gff for
GH13132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrX | 1546154..1546875 | 1..722 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:54:44 Download gff for
GH13132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11509-RA | 1..354 | 213..566 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 20:21:18 has no hits.
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:54:24 Download gff for
GH13132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11509-RA | 1..354 | 213..566 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:54:44 Download gff for
GH13132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11509-RA | 1..722 | 1..722 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 20:21:18 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:54:24 Download gff for
GH13132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11509-RA | 1..722 | 1..722 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:09:48 Download gff for
GH13132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1652321..1653042 | 1..722 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:09:48 Download gff for
GH13132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1652321..1653042 | 1..722 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:09:48 Download gff for
GH13132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1652321..1653042 | 1..722 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:54:44 Download gff for
GH13132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1546354..1547075 | 1..722 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:57:57 Download gff for
GH13132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1660419..1661140 | 1..722 | 100 | | Plus |
GH13132.pep Sequence
Translation from 212 to 565
> GH13132.pep
MDVDSGVPRCSIRLLSTLRIKDKPNQLNILSSWKHSLVHKRLHTYSCRNI
THTNISNYTHTHNHSHSHTDRRSSQNSKGKTNSSSMNTKSNRQKFPLATI
SNCFSHKLELELELKLQ*
Sequence GH13132.pep has no blast hits.
GH13132.hyp Sequence
Translation from 212 to 565
> GH13132.hyp
MDVDSGVPRCSIRLLSTLRIKDKPNQLNILSSWKHSLVHKRLHTYSCRNI
THTNISNYTHTHNHSHSHTDRRSSQNSKGKTNSSSMNTKSNRQKFPLATI
SNCFSHKLELELELKLQ*
GH13132.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:38:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11509-PA | 117 | CG11509-PA | 1..117 | 1..117 | 620 | 100 | Plus |