Clone GH13134 Report

Search the DGRC for GH13134

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:131
Well:34
Vector:pOT2
Associated Gene/Transcriptnrv2-RC
Protein status:GH13134.pep: gold
Preliminary Size:2181
Sequenced Size:2149

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9261 2001-01-01 Release 2 assignment
CG9261 2001-07-04 Blastp of sequenced clone
CG9261 2003-01-01 Sim4 clustering to Release 3
nrv2 2008-04-29 Release 5.5 accounting
nrv2 2008-08-15 Release 5.9 accounting
nrv2 2008-12-18 5.12 accounting

Clone Sequence Records

GH13134.complete Sequence

2149 bp (2149 high quality bases) assembled on 2001-07-04

GenBank Submission: AY060289

> GH13134.complete
CGGCGCACAGCGGTGTCAACTTGTCGTGTGCAGCGCATATCCAAAGTGTT
ACAGAGTAAAACCATCAGCCTTTCCAGCCATAGACCAAAGCCAACCGAGC
CTTACACGGGATCTACACCGAACTGCCCAGGAGTCCAGTTGGATACACGA
TCCACCTCACATATCCATACCCCTACACATTCCAATTTCCAATCCAGTGA
TTCGAAAACCTTTGCCCACGCGATCCCGATCACGAAACCGTTTAGCCGTT
GAACTGAGGAAGCGCCAGCCAAAGAAGAAGCCTGGTATAATGCCTACCAT
AACCGAGGATTGCATAGATGGATTCCAACAGTACTACTCGCGGCCACCGG
AGAGGCCCAAGAAGAAGTCCCTGAAGCAGATGGTCTACGACTCGGAGGAC
AACTCCTACTTCGGACGCTCGATGGACAGCTGGGCCAAAATCGGAATCTT
CTATGTGGCCTTCTACGGAGTCCTAGCCGCCCTCGTTGCCATCTGCATGT
GGGCCTTCTTCCAAACTCTCGATCCTCGCATTCCCAAGTGGACCCTGGAC
CGTTCCCTGATAGGTACAAATCCAGGTCTAGGTTTTCGACCCCTGCCACC
GGTGGACAATGTGGAAAGCACTTTGATCTGGTACAAGGGCACCCAACACG
AGAACTACAAGCACTGGACAGACTCCCTGGATGATTTCCTTGCGGTGTAC
AAAGTACCTGGTCTAACACCCGGCCGTGGTCAGAACATCTACAACTGCGA
CTACAACCAGCCGCCGCCAAAGGGTCAGGTGTGCGACGTGGACATCAAGA
CGTGGTCGCCGTGCACCAAGGAGAATAACTACAGCTACCACAAGAGTGCG
CCGTGTATCTTCCTCAAGCTGAACAAGATCTACGGCTGGATTCCGGAGTA
CTACAACAGATCGAATGACTTGCCCGCGAACATGCCCGCCAGCTTGAAGA
CCTACATCGCAGAGGTCGAGAAGACGCAGCCAGAAAAGCTAAACACCATT
TGGGTATCGTGCGAGGGCGAGAACCCAGCCGACCAGGAGAACATTGGTGC
TGTCAACTACCTGCCAATCAGGGGATTCCCCGGCTACTTCTATCCCTACC
AGAACTCCGAGGGCTACTTGAGTCCCCTGGTGGCGGTGCACTTCCAGCGC
CCCAAACGCGGAATCATCATCAACGTGGAGTGCAGGGCTTGGGCTCGCAA
CATCATACACGATCGCAAGGAGAGAATCGGATCGGTGCACTATGAGCTCC
TCATTGATTAAATTGTACCACACTATTACAACATAACATAATAGCAAACA
CAATAACAAGAATCTCCGATTAACAAGAATCTCGGTATCAGAGGTGTGTG
AGGACGATAAGTCTCGTCTAAGACAATCCTACCAGAGGCAAACCACCAGA
TGTTGTAGTGAAGATTGTGAAAGGTTCAGATTTTCGAATGTCATTAAAAA
TCCAAATTATTTAAACTTGTTTTCCGCGTTATAAAGCATACAAAATATAT
ATTCAAGACTTGCAACGCCTATAAACATACAAATTTTGAATTCCAATAAC
TTTTTATGCACTTTACGATGAAAGTTAGACGTAAGATTGTAAAGCTAAAC
CACCAAGATGGGAACTCAATGGACAGGATGGAACTAAACCAGCCTGAATC
TCGTTTGGCGCTGACCAGTAAATTTGGCGCTGACCAGTAAATAGTAAATC
AATCAAATGCAACAAATTTACAGCAATTAATCCAAACTGCCATTTCCAAT
GAATTAACAAACGAATCCCTAGATATTACAAATTTATAAAGAAAATTTAA
GAATCATTTTTGAGTCTGCCGCTATGTAACATGTAACCGAAAACAGACCA
ATTTTGTCTACCAAAAATCTAAATATTTACAGCTAGCTTCAGAATTTACC
ATATTTATTAATAACTTAGTCAAAAGTGAAGCCTATATACATATACATCA
CATTTTGATAGACGACAAAAGTGCAACATTTGGAAAACAGAAAATCGTAA
CTTCGGTTAACTTGTAAGCTTATGATATAATAATTGCGAAGATTGAAATT
TAAGGAAATAAATTGAGACGGCTAAGAGACACAAAACACTTTCAATTCCT
TTTCAATAAAAATCAAATGAAAGTAGTCAGAAAAAAAAAAAAAAAAAAA

GH13134.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:36:35
Subject Length Description Subject Range Query Range Score Percent Strand
nrv2-RC 2726 nrv2-RC 587..2720 1..2134 10670 100 Plus
nrv2-RF 2262 nrv2-RF 84..2217 1..2134 10670 100 Plus
nrv2-RA 2132 nrv2-RA 374..2077 431..2134 8520 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6788817..6789792 2130..1158 4710 99.1 Minus
chr2L 23010047 chr2L 6795386..6795819 434..1 2155 99.8 Minus
chr2L 23010047 chr2L 6790080..6790377 988..691 1475 99.7 Minus
chr2L 23010047 chr2L 6789847..6790018 1158..987 815 98.3 Minus
chr2L 23010047 chr2L 6790748..6790891 577..434 720 100 Minus
chr2L 23010047 chr2L 6790567..6790689 695..573 615 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:48:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:57:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6789766..6790742 2134..1158 4885 100 Minus
2L 23513712 2L 6796337..6796770 434..1 2170 100 Minus
2L 23513712 2L 6791031..6791328 988..691 1475 99.7 Minus
2L 23513712 2L 6790798..6790969 1158..987 860 100 Minus
2L 23513712 2L 6791699..6791842 577..434 720 100 Minus
2L 23513712 2L 6791518..6791640 695..573 615 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:58:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6789766..6790742 2134..1158 4885 100 Minus
2L 23513712 2L 6796337..6796770 434..1 2170 100 Minus
2L 23513712 2L 6791031..6791328 988..691 1475 99.6 Minus
2L 23513712 2L 6790798..6790969 1158..987 860 100 Minus
2L 23513712 2L 6791699..6791842 577..434 720 100 Minus
2L 23513712 2L 6791518..6791640 695..573 615 100 Minus
Blast to na_te.dros performed 2019-03-16 08:57:17
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 925..961 1150..1185 119 83.8 Plus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 4633..4686 536..483 117 68.5 Minus

GH13134.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:58:20 Download gff for GH13134.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6788817..6789792 1158..2130 99 <- Minus
chr2L 6789848..6790016 989..1157 98 <- Minus
chr2L 6790080..6790372 696..988 100 <- Minus
chr2L 6790567..6790686 576..695 100 <- Minus
chr2L 6790750..6790890 435..575 100 <- Minus
chr2L 6795386..6795819 1..434 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:39:43 Download gff for GH13134.complete
Subject Subject Range Query Range Percent Splice Strand
nrv2-RF 1..972 290..1261 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:27:24 Download gff for GH13134.complete
Subject Subject Range Query Range Percent Splice Strand
nrv2-RF 1..972 290..1261 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:55:20 Download gff for GH13134.complete
Subject Subject Range Query Range Percent Splice Strand
nrv2-RC 1..972 290..1261 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:00:39 Download gff for GH13134.complete
Subject Subject Range Query Range Percent Splice Strand
nrv2-RF 1..972 290..1261 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:54:42 Download gff for GH13134.complete
Subject Subject Range Query Range Percent Splice Strand
nrv2-RC 1..972 290..1261 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:26:52 Download gff for GH13134.complete
Subject Subject Range Query Range Percent Splice Strand
nrv2-RF 11..2140 1..2130 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:27:24 Download gff for GH13134.complete
Subject Subject Range Query Range Percent Splice Strand
nrv2-RF 11..2140 1..2130 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:55:20 Download gff for GH13134.complete
Subject Subject Range Query Range Percent Splice Strand
nrv2-RC 539..2668 1..2130 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:00:40 Download gff for GH13134.complete
Subject Subject Range Query Range Percent Splice Strand
nrv2-RF 11..2140 1..2130 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:54:42 Download gff for GH13134.complete
Subject Subject Range Query Range Percent Splice Strand
nrv2-RC 539..2668 1..2130 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:58:20 Download gff for GH13134.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6790799..6790967 989..1157 100 <- Minus
2L 6789770..6790742 1158..2130 100 <- Minus
2L 6791031..6791323 696..988 100 <- Minus
2L 6791518..6791637 576..695 100 <- Minus
2L 6791701..6791841 435..575 100 <- Minus
2L 6796337..6796770 1..434 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:58:20 Download gff for GH13134.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6790799..6790967 989..1157 100 <- Minus
2L 6789770..6790742 1158..2130 100 <- Minus
2L 6791031..6791323 696..988 100 <- Minus
2L 6791518..6791637 576..695 100 <- Minus
2L 6791701..6791841 435..575 100 <- Minus
2L 6796337..6796770 1..434 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:58:20 Download gff for GH13134.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6790799..6790967 989..1157 100 <- Minus
2L 6789770..6790742 1158..2130 100 <- Minus
2L 6791031..6791323 696..988 100 <- Minus
2L 6791518..6791637 576..695 100 <- Minus
2L 6791701..6791841 435..575 100 <- Minus
2L 6796337..6796770 1..434 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:55:20 Download gff for GH13134.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6791701..6791841 435..575 100 <- Minus
arm_2L 6791031..6791323 696..988 100 <- Minus
arm_2L 6790799..6790967 989..1157 100 <- Minus
arm_2L 6791518..6791637 576..695 100 <- Minus
arm_2L 6789770..6790742 1158..2130 100 <- Minus
arm_2L 6796337..6796770 1..434 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:38:30 Download gff for GH13134.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6791518..6791637 576..695 100 <- Minus
2L 6791701..6791841 435..575 100 <- Minus
2L 6791031..6791323 696..988 100 <- Minus
2L 6790799..6790967 989..1157 100 <- Minus
2L 6789770..6790742 1158..2130 100 <- Minus
2L 6796337..6796770 1..434 100   Minus

GH13134.hyp Sequence

Translation from 1 to 1260

> GH13134.hyp
GAQRCQLVVCSAYPKCYRVKPSAFPAIDQSQPSLTRDLHRTAQESSWIHD
PPHISIPLHIPISNPVIRKPLPTRSRSRNRLAVELRKRQPKKKPGIMPTI
TEDCIDGFQQYYSRPPERPKKKSLKQMVYDSEDNSYFGRSMDSWAKIGIF
YVAFYGVLAALVAICMWAFFQTLDPRIPKWTLDRSLIGTNPGLGFRPLPP
VDNVESTLIWYKGTQHENYKHWTDSLDDFLAVYKVPGLTPGRGQNIYNCD
YNQPPPKGQVCDVDIKTWSPCTKENNYSYHKSAPCIFLKLNKIYGWIPEY
YNRSNDLPANMPASLKTYIAEVEKTQPEKLNTIWVSCEGENPADQENIGA
VNYLPIRGFPGYFYPYQNSEGYLSPLVAVHFQRPKRGIIINVECRAWARN
IIHDRKERIGSVHYELLID*

GH13134.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:39:00
Subject Length Description Subject Range Query Range Score Percent Strand
nrv2-PG 323 CG9261-PG 1..323 97..419 1792 100 Plus
nrv2-PF 323 CG9261-PF 1..323 97..419 1792 100 Plus
nrv2-PC 323 CG9261-PC 1..323 97..419 1792 100 Plus
nrv2-PE 322 CG9261-PE 21..322 118..419 1589 94.7 Plus
nrv2-PA 322 CG9261-PA 21..322 118..419 1589 94.7 Plus

GH13134.pep Sequence

Translation from 289 to 1260

> GH13134.pep
MPTITEDCIDGFQQYYSRPPERPKKKSLKQMVYDSEDNSYFGRSMDSWAK
IGIFYVAFYGVLAALVAICMWAFFQTLDPRIPKWTLDRSLIGTNPGLGFR
PLPPVDNVESTLIWYKGTQHENYKHWTDSLDDFLAVYKVPGLTPGRGQNI
YNCDYNQPPPKGQVCDVDIKTWSPCTKENNYSYHKSAPCIFLKLNKIYGW
IPEYYNRSNDLPANMPASLKTYIAEVEKTQPEKLNTIWVSCEGENPADQE
NIGAVNYLPIRGFPGYFYPYQNSEGYLSPLVAVHFQRPKRGIIINVECRA
WARNIIHDRKERIGSVHYELLID*

GH13134.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:05:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14479-PA 323 GF14479-PA 1..323 1..323 1661 93.5 Plus
Dana\GF14332-PA 311 GF14332-PA 8..311 14..323 872 50.6 Plus
Dana\GF14480-PA 309 GF14480-PA 16..309 20..323 681 42.5 Plus
Dana\GF18471-PA 386 GF18471-PA 24..260 22..308 194 25.5 Plus
Dana\GF18472-PA 378 GF18472-PA 36..276 32..320 159 24.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:05:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23580-PA 323 GG23580-PA 1..323 1..323 1692 96.6 Plus
Dere\GG21302-PA 311 GG21302-PA 8..311 14..323 861 50.3 Plus
Dere\GG23582-PA 309 GG23582-PA 16..309 20..323 651 42.2 Plus
Dere\GG21303-PA 204 GG21303-PA 30..204 148..323 548 54.5 Plus
Dere\GG16108-PA 345 GG16108-PA 20..274 18..320 213 22.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:05:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10786-PA 323 GH10786-PA 1..323 1..323 1606 88.9 Plus
Dgri\GH13318-PA 311 GH13318-PA 8..311 14..323 838 48.9 Plus
Dgri\GH10787-PA 309 GH10787-PA 9..309 13..323 618 39.3 Plus
Dgri\GH22397-PA 277 GH22397-PA 25..274 21..320 229 23 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:56:55
Subject Length Description Subject Range Query Range Score Percent Strand
nrv2-PG 323 CG9261-PG 1..323 1..323 1792 100 Plus
nrv2-PF 323 CG9261-PF 1..323 1..323 1792 100 Plus
nrv2-PC 323 CG9261-PC 1..323 1..323 1792 100 Plus
nrv2-PE 322 CG9261-PE 21..322 22..323 1589 94.7 Plus
nrv2-PA 322 CG9261-PA 21..322 22..323 1589 94.7 Plus
nrv2-PD 322 CG9261-PD 21..322 22..323 1589 94.7 Plus
nrv3-PE 313 CG8663-PE 8..313 14..323 886 50.3 Plus
nrv3-PD 311 CG8663-PD 8..311 14..323 884 50.3 Plus
nrv3-PC 311 CG8663-PC 8..311 14..323 884 50.3 Plus
nrv3-PA 311 CG8663-PA 8..311 14..323 884 50.3 Plus
nrv1-PB 309 CG9258-PB 16..309 20..323 654 42.2 Plus
nrv1-PA 309 CG9258-PA 16..309 20..323 654 42.2 Plus
CG11703-PA 353 CG11703-PA 20..274 18..320 239 25 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:05:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17298-PA 323 GI17298-PA 1..323 1..323 1537 85.8 Plus
Dmoj\GI12264-PA 310 GI12264-PA 8..310 14..323 841 48.7 Plus
Dmoj\GI17299-PA 309 GI17299-PA 11..309 15..323 668 42.3 Plus
Dmoj\GI16930-PA 276 GI16930-PA 34..271 30..320 180 25.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25960-PA 323 GL25960-PA 1..323 1..323 1655 93.8 Plus
Dper\GL26665-PA 311 GL26665-PA 8..311 14..323 859 50 Plus
Dper\GL25961-PA 309 GL25961-PA 20..309 24..323 659 42.6 Plus
Dper\GL25223-PA 321 GL25223-PA 23..321 20..323 543 37.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21652-PA 323 GA21652-PA 1..323 1..323 1659 94.1 Plus
Dpse\GA21243-PA 311 GA21243-PA 8..311 14..323 859 50 Plus
Dpse\GA21650-PA 309 GA21650-PA 20..309 24..323 657 42.1 Plus
Dpse\GA22950-PA 321 GA22950-PA 23..321 20..323 548 37.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:05:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13825-PA 323 GM13825-PA 1..323 1..323 1731 99.4 Plus
Dsec\GM23414-PA 311 GM23414-PA 8..311 14..323 861 50.3 Plus
Dsec\GM13836-PA 309 GM13836-PA 16..309 20..323 652 41.8 Plus
Dsec\GM26920-PA 347 GM26920-PA 20..274 18..320 233 24 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22540-PA 340 GD22540-PA 1..340 1..323 1685 92.9 Plus
Dsim\GD22541-PA 309 GD22541-PA 16..309 20..323 659 42.2 Plus
Dsim\GD20125-PA 347 GD20125-PA 20..274 18..320 237 24.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15658-PA 323 GJ15658-PA 1..323 1..323 1590 89.8 Plus
Dvir\GJ17853-PA 311 GJ17853-PA 8..311 14..323 843 48.2 Plus
Dvir\GJ15669-PA 309 GJ15669-PA 10..309 14..323 650 41.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24210-PA 323 GK24210-PA 1..323 1..323 1614 90.7 Plus
Dwil\GK18742-PA 311 GK18742-PA 8..311 14..323 864 50 Plus
Dwil\GK24211-PA 309 GK24211-PA 16..309 20..323 664 42.2 Plus
Dwil\GK13483-PA 345 GK13483-PA 34..262 30..311 168 24.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18402-PA 323 GE18402-PA 1..323 1..323 1696 96.6 Plus
Dyak\GE12918-PA 311 GE12918-PA 8..311 14..323 863 50.3 Plus
Dyak\GE18403-PA 309 GE18403-PA 16..309 20..323 655 42.2 Plus
Dyak\GE25144-PA 348 GE25144-PA 20..273 18..320 241 24.4 Plus