Clone GH13165 Report

Search the DGRC for GH13165

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:131
Well:65
Vector:pOT2
Associated Gene/TranscriptCG3121-RA
Protein status:GH13165.pep: gold
Preliminary Size:2257
Sequenced Size:2301

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3121 2001-01-01 Release 2 assignment
CG3121 2002-03-19 Blastp of sequenced clone
CG3121 2003-01-01 Sim4 clustering to Release 3
CG3121 2008-04-29 Release 5.5 accounting
CG3121 2008-08-15 Release 5.9 accounting
CG3121 2008-12-18 5.12 accounting

Clone Sequence Records

GH13165.complete Sequence

2301 bp (2301 high quality bases) assembled on 2002-03-19

GenBank Submission: AY094708

> GH13165.complete
TCAAACCATTACTCCTACAATTATTGGGTTTTCCCAAGCCAAACAACACA
TGCTTTTGAGGATTTTAGATCAGAGTCTCACTATTCCATCGCGATGGACA
GGGATTCCTGCCAAAATTTCTCATTAGACTCCACGAGCAGTTCCCATTTT
GCTCCTCCGCCAGTTTGCGCGCCCAGAAGGAAGAAGCCGGAGAAGCCCGC
AGCTGAGGAGGCATCTCCCGAATGCTCCAACGTCACATCGTCATCCTCGT
CCTCGACAACCACCATATCCATAGGCGCCTTCGATTCGCAATGCAACCTC
CACAACGCCCGGAATCCCGAGGCCCCGAACATTGGCTATGAGTTGAACGT
GGCCAAGTCCATATTGCAGAAGTATAGCACCCTCAGTGGGGACAACTTGT
TCGATCATCTTAGTGACATCATAAAGAGGGTGATTGACGAACGTCCTCCG
AATGTGATAGACTTCTTCGAGGAATTTAGCCGAAATGTTCGCGAACAGAA
GTTCCACTTGCCAGAACGCTTTCCGCCCAGTGGCGTGTTCGATGAGGTGC
GATCTTTCCGGGTGGCCAAGAAAATTCTCCAATCCATGAAGCTGCCCTAT
GTCGTTGAGGGTGAGGATCTGATGGGCGAAGACCTGTCCGTCGAGGATTT
GAGAACGAACGAGGATATGCGCATTGTCATCGACGATTCCATGCGATACT
TCGTCACATTCAACGAGCGAGTCCAGCAGCTGCAGTTCTATTGGACACAG
TGCGGATTTAGCATCAGCAACGACGACATCTTCCAGCTGGCCAGCGCCAT
GAACCGGCTGCAGACGCATCCCTCGATCATGCAATGCAGATTCTGGGGCT
GCATCAACGGACTGAAGGCCTCTTACTACATAGTGGAAGCTTCGCTCACC
CGCGAGGAAATCGCCTCGCGCTTGGTCATGATGGAGGAAGAGATGCGGCA
GAAGCAGATTCCGTTCCCGATGCGCAAGGACAGGGAGGACAAGCCACCGC
CGGCGCACATTGGGCCGGAGCTCACACCGGGCATCTATGGCTGGGAGGAA
TTTCCGCCTGAGGAGCTCGAGAAGATGAAGCCCAAGGCTGCGCCCGTTCC
CCTGGTGGAGGAGATGGAGCTCTACGACATTCCACCGGAGTTCATTGGCA
AGGGCTGCAATAGGTACTCCTATTTCGTTGTGAACTCGCTATTTGACGAC
TGGATCGAACTACCTATAGTGACCCCTCGACAGATTGTCGTTTCGCGGCA
GATCAAGAAGTTCCTAACAGGCGATCTGGAGGCGGATGTCATATCCTACC
CCTGCTTCCCTGGAAAGGAGAAACATTACCTACGGACTCTGATAGGTCGC
ATCACAGCGGGTACCTACATCGCTCCTGTGGGCTACTACAGGCGCATGAC
CAAGAAGGAGCAGCGGATGTTCGATGGCGAGGAAGAAGAAGAGGGCGAGG
AGGAGGAGGAGGAAGAAGAGGAGGAGGAGTTCAACGAAGGCGAGGAGGAG
CAAATAGAAGATAACGACGTAATGCTTTTGAAAAACGAGAAGTACGAGGC
GGAACCACTGGGTTCTCTGGCCACCCCGGTTGCTTGGGTTCATGTCAGGT
CCAATATTCTGAACCAACAAGGCCGCGTTGTCTGGTACGACGAGGAGAAG
GCCCGCAAGGAGCGCGAAAAGGCACTGGCCCTGTACCTGAAGATGCAGAT
GCTGGGCGAGATGGAAGAGGAGGTGGAGGAGGAGGAGGATGAGGAAGAAG
GCGAGGAGGAGGGCGAAGAAGAGGGCATGATCGAGGGCTTCAATCAGCCC
GAACTGGGTCCCAGTATCCTCTCCTCCTGTGCCAATGACATGAACCCCGA
GGTGCCAGTTTCCTGGCTCGCCCGCATGACCAGCAAGTACACGAATCAGA
AGGAGCGAATGCTCGTGATGCAGTCGAACGTCTGGCCAGGCGCCTACACG
TTCATCTTTGAGAAGACCTGCGAGTCGATATACTTGGGCTGGGGCCACAA
GTACTACGCCCGCAATATTCCCTTCAAGCACTTGCCGATGGTGCAGGAGG
AGTTCCCCCACAACCCAGAGGACTTCGTCGAGGCCAACGATCCGACTGTC
GAGGAGGAGGAAGCTTACAAGGCTTGGCTCCTCCGGAAGCAGCAGAAGGC
CGAGTATGTGGCCGAAGACATCGAAGACTACGATGATGACGAGTTCGCCG
ATCAGTATGACGACGACTGAGTTAAATGAAATTGCTTGTTTTTATGTTCT
CATTCAAGTTCTGCAATAAAATGTATTGGCTTTGAAAAAAAAAAAAAAAA
A

GH13165.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:22:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG3121-RA 2289 CG3121-RA 7..2289 1..2283 11415 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:28:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19904225..19905145 590..1510 4440 98.8 Plus
chr2R 21145070 chr2R 19905197..19905972 1509..2284 3850 99.7 Plus
chr2R 21145070 chr2R 19903496..19903895 1..400 1985 99.8 Plus
chr2R 21145070 chr2R 19903976..19904168 399..591 905 97.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:48:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:28:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24018149..24019069 590..1510 4605 100 Plus
2R 25286936 2R 24019121..24019896 1509..2284 3880 100 Plus
2R 25286936 2R 24017421..24017820 1..400 2000 100 Plus
2R 25286936 2R 24017901..24018093 399..591 965 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:51:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 24019348..24020268 590..1510 4605 100 Plus
2R 25260384 2R 24020320..24021095 1509..2284 3880 100 Plus
2R 25260384 2R 24018620..24019019 1..400 2000 100 Plus
2R 25260384 2R 24019100..24019292 399..591 965 100 Plus
Blast to na_te.dros performed on 2019-03-16 14:28:46 has no hits.

GH13165.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:29:23 Download gff for GH13165.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19903496..19903893 1..398 99 -> Plus
chr2R 19903976..19904168 399..591 97 -> Plus
chr2R 19904227..19905063 592..1428 98 == Plus
chr2R 19905115..19905145 1480..1510 100 -> Plus
chr2R 19905199..19905400 1511..1712 100 == Plus
chr2R 19905463..19905972 1775..2284 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:39:45 Download gff for GH13165.complete
Subject Subject Range Query Range Percent Splice Strand
CG3121-RA 1..2127 94..2220 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:30:53 Download gff for GH13165.complete
Subject Subject Range Query Range Percent Splice Strand
CG3121-RA 1..2127 94..2220 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:27:23 Download gff for GH13165.complete
Subject Subject Range Query Range Percent Splice Strand
CG3121-RA 1..2127 94..2220 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:04:20 Download gff for GH13165.complete
Subject Subject Range Query Range Percent Splice Strand
CG3121-RA 1..2127 94..2220 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:32:54 Download gff for GH13165.complete
Subject Subject Range Query Range Percent Splice Strand
CG3121-RA 1..2127 94..2220 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:57:01 Download gff for GH13165.complete
Subject Subject Range Query Range Percent Splice Strand
CG3121-RA 1..2283 1..2283 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:30:52 Download gff for GH13165.complete
Subject Subject Range Query Range Percent Splice Strand
CG3121-RA 1..2283 1..2283 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:23 Download gff for GH13165.complete
Subject Subject Range Query Range Percent Splice Strand
CG3121-RA 1..2284 1..2284 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:04:20 Download gff for GH13165.complete
Subject Subject Range Query Range Percent Splice Strand
CG3121-RA 1..2283 1..2283 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:32:54 Download gff for GH13165.complete
Subject Subject Range Query Range Percent Splice Strand
CG3121-RA 1..2284 1..2284 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:29:23 Download gff for GH13165.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24019123..24019896 1511..2284 100   Plus
2R 24017421..24017818 1..398 100 -> Plus
2R 24017901..24018093 399..591 100 -> Plus
2R 24018151..24019069 592..1510 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:29:23 Download gff for GH13165.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24019123..24019896 1511..2284 100   Plus
2R 24017421..24017818 1..398 100 -> Plus
2R 24017901..24018093 399..591 100 -> Plus
2R 24018151..24019069 592..1510 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:29:23 Download gff for GH13165.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24019123..24019896 1511..2284 100   Plus
2R 24017421..24017818 1..398 100 -> Plus
2R 24017901..24018093 399..591 100 -> Plus
2R 24018151..24019069 592..1510 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:23 Download gff for GH13165.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19904944..19905341 1..398 100 -> Plus
arm_2R 19905424..19905616 399..591 100 -> Plus
arm_2R 19905674..19906592 592..1510 100 -> Plus
arm_2R 19906646..19907419 1511..2284 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:38:04 Download gff for GH13165.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24018638..24019035 1..398 100 -> Plus
2R 24019118..24019310 399..591 100 -> Plus
2R 24019368..24020286 592..1510 100 -> Plus
2R 24020340..24021113 1511..2284 100   Plus

GH13165.hyp Sequence

Translation from 1 to 2219

> GH13165.hyp
SNHYSYNYWVFPSQTTHAFEDFRSESHYSIAMDRDSCQNFSLDSTSSSHF
APPPVCAPRRKKPEKPAAEEASPECSNVTSSSSSSTTTISIGAFDSQCNL
HNARNPEAPNIGYELNVAKSILQKYSTLSGDNLFDHLSDIIKRVIDERPP
NVIDFFEEFSRNVREQKFHLPERFPPSGVFDEVRSFRVAKKILQSMKLPY
VVEGEDLMGEDLSVEDLRTNEDMRIVIDDSMRYFVTFNERVQQLQFYWTQ
CGFSISNDDIFQLASAMNRLQTHPSIMQCRFWGCINGLKASYYIVEASLT
REEIASRLVMMEEEMRQKQIPFPMRKDREDKPPPAHIGPELTPGIYGWEE
FPPEELEKMKPKAAPVPLVEEMELYDIPPEFIGKGCNRYSYFVVNSLFDD
WIELPIVTPRQIVVSRQIKKFLTGDLEADVISYPCFPGKEKHYLRTLIGR
ITAGTYIAPVGYYRRMTKKEQRMFDGEEEEEGEEEEEEEEEEEFNEGEEE
QIEDNDVMLLKNEKYEAEPLGSLATPVAWVHVRSNILNQQGRVVWYDEEK
ARKEREKALALYLKMQMLGEMEEEVEEEEDEEEGEEEGEEEGMIEGFNQP
ELGPSILSSCANDMNPEVPVSWLARMTSKYTNQKERMLVMQSNVWPGAYT
FIFEKTCESIYLGWGHKYYARNIPFKHLPMVQEEFPHNPEDFVEANDPTV
EEEEAYKAWLLRKQQKAEYVAEDIEDYDDDEFADQYDDD*

GH13165.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG3121-PA 708 CG3121-PA 1..708 32..739 3757 100 Plus

GH13165.pep Sequence

Translation from 93 to 2219

> GH13165.pep
MDRDSCQNFSLDSTSSSHFAPPPVCAPRRKKPEKPAAEEASPECSNVTSS
SSSSTTTISIGAFDSQCNLHNARNPEAPNIGYELNVAKSILQKYSTLSGD
NLFDHLSDIIKRVIDERPPNVIDFFEEFSRNVREQKFHLPERFPPSGVFD
EVRSFRVAKKILQSMKLPYVVEGEDLMGEDLSVEDLRTNEDMRIVIDDSM
RYFVTFNERVQQLQFYWTQCGFSISNDDIFQLASAMNRLQTHPSIMQCRF
WGCINGLKASYYIVEASLTREEIASRLVMMEEEMRQKQIPFPMRKDREDK
PPPAHIGPELTPGIYGWEEFPPEELEKMKPKAAPVPLVEEMELYDIPPEF
IGKGCNRYSYFVVNSLFDDWIELPIVTPRQIVVSRQIKKFLTGDLEADVI
SYPCFPGKEKHYLRTLIGRITAGTYIAPVGYYRRMTKKEQRMFDGEEEEE
GEEEEEEEEEEEFNEGEEEQIEDNDVMLLKNEKYEAEPLGSLATPVAWVH
VRSNILNQQGRVVWYDEEKARKEREKALALYLKMQMLGEMEEEVEEEEDE
EEGEEEGEEEGMIEGFNQPELGPSILSSCANDMNPEVPVSWLARMTSKYT
NQKERMLVMQSNVWPGAYTFIFEKTCESIYLGWGHKYYARNIPFKHLPMV
QEEFPHNPEDFVEANDPTVEEEEAYKAWLLRKQQKAEYVAEDIEDYDDDE
FADQYDDD*

GH13165.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:22:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12889-PA 711 GF12889-PA 1..711 1..708 2848 83 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:22:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22920-PA 693 GG22920-PA 1..693 1..708 3111 92.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:22:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20165-PA 712 GH20165-PA 7..694 5..691 2366 69.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:34:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG3121-PA 708 CG3121-PA 1..708 1..708 3757 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:22:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18866-PA 714 GI18866-PA 3..700 2..697 2419 68.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:22:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11649-PA 714 GL11649-PA 1..688 1..685 2714 78.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:22:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16095-PA 713 GA16095-PA 1..688 1..685 2667 79 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:22:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16080-PA 435 GM16080-PA 1..430 1..430 2267 97.4 Plus
Dsec\GM16082-PA 267 GM16082-PA 1..267 442..708 1376 98.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:22:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11821-PA 332 GD11821-PA 1..304 1..304 1506 96.1 Plus
Dsim\GD15458-PA 274 GD15458-PA 1..274 435..708 1404 98.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20436-PA 713 GJ20436-PA 1..697 1..696 2369 69.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:23:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21932-PA 715 GK21932-PA 3..695 1..693 2529 74.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14357-PA 714 GE14357-PA 1..714 1..708 3649 95.4 Plus