Clone GH13213 Report

Search the DGRC for GH13213

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:132
Well:13
Vector:pOT2
Associated Gene/TranscriptCG32392-RB
Protein status:GH13213.pep: gold
Preliminary Size:2458
Sequenced Size:2514

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10099 2001-01-01 Release 2 assignment
CG32392 2001-07-04 Blastp of sequenced clone
CG32392 2008-04-29 Release 5.5 accounting
CG32392 2008-08-15 Release 5.9 accounting
CG32392 2008-12-18 5.12 accounting

Clone Sequence Records

GH13213.complete Sequence

2514 bp (2514 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051459

> GH13213.complete
CCATTCGAGCCGTGCGGTACGTGTTCCGCGACAAAATCAAACAATCAACC
AACGAACGCAACACCTGAGCGGCGCACAAAAGGGAAAAATATAGGAAAAG
TATTGATTAAGTTTTTCGGTGCGGCGGGTGAGAGAACCGTGTGGTGGCTA
TTTATAATGAACGAGGTGACCGGCGGCCGGGAGCAGGGATAACCGAGACG
GTAGCGGAGACCATGCCAGAGACGGAGCAGCAGCAGCACCCAGCACACTC
ACATCCTGAACTTAAGCCAGATCCACAGCCAGTGCCAGAACTGGAGCACC
TCACCGACAATAGACCGAATCGCGTGCAGAACTTCTCCTTCGCCAGCAGC
TATCCCTACGCACCAGGACGCGTCTCGTCCAGCTCCAATTCGAACACCAA
CTACAGCTCCACCAACTACAACGCCGGCGGCTTCAACGTCCAGCGCTATC
AGAGTCCCTACAATTTCCAGCACGTGGTGACCAACGCATTCTCGGTGCTG
CGCCATCAGCCCTCCGAGGAGCCCGAATTCGATTCCTATCCAACGCGACC
CCAACAGGCCATCGTGCGTCCGATTAGACGTGAGGCGGGCATAGCTGATA
ACCGTGATAATCATGTAGGGAATCCTCCACAGCGATCGCACTTCTCGCGC
AGCAACCAGGAGGTGCGCAGCTTCGCCGATGAGCTGAGCCAGAAGCTGCG
CTTCCTGGCGCCGGAGGAGCAGAACTACGGCGGTCGCCAGAGCGCCAATT
CCGGTGCCTGGATGGATCCAGCGATGTCGCAGCGACCACGATTCGAGACC
ACAGTGCCGCAGGGCATCTTCCTGCCGCCTCCGCATGAGGTCCAAATGAT
ACCGGCCACCATGCTGAGGAGGCATGTCTACGCCTACTCCTCATATCCCA
TGATCCTCCAAGGGTATCTCACCAAGGAGACCGGCAGTGAGAGCAAGGAG
CAGAAGGTGACCGCCACCCGGCTGAACGGTTTGCGTGCCACGGCGGCAGT
GGCGGCGGCCACAGCTGCGGCCTCCAAATCCTCCCGTAACGATACGCAAT
CCCTCGCCGGTGGACTCCACATCACCAAGGCTCAGTTCCAACAACAACTG
CAACAGCGTCGCTCCACCAGCAACAACAACAACAACAGCAGCAGCAACAT
CAGCGACAAGAGACCCGTCGTCCCGCCGCCGGAACCCTACAAGAACGTCA
TGTACGACCGTCGCGTCATAAAGGGCAGCAACTTCGGCAACGCCTCTCTG
GTGACGGATGTGGATCCCTTCGACAAGGCCGCCGAATTGAGGCGTCGCAA
TATGTTGCGCAAACGGACGATGCAGTGCCGCAATCAGAGAAATGTCCTGG
GCACACCGCCGCCGGTCAAGGGGCGGAAGCACGAGACCATACAGACGGAG
AAGTATCTGGAGAAGTTGGTGCAGCGTCCGCCGGAGTTCACCATCGACAC
GCAGACGGACCTGTTCCTCGAGAAGCCGCCGACGCCTCCGTTCATACCGG
CCAAGGTGGGCGTGGATGTGGCCACCGAGATCGGTGAGGGCGAACTCTTC
CACTTCGATGCCGAGGCGCAGCCAATCATCGATGTCCTGGTGGACGCCTG
CATTGAACAAAGCATGCTGGAGGTGGCTCACGAGATGGAACTGTCCAGTC
TGCGACGCAAACAGGAAGAATTCCTGGCCCAGAGGGAGGCGGAACTGGCC
GAGCTGCGCCGTTTGGAGGCTGAGGAGCTGCGCTTGCAGGCGGAGAAGGA
GCGTCGCCTGCGACAAGATGCGATTGCCAAGGAGCTGGACGCTGAGATGC
AGAAGAGCGTGACGGCGGCCAAGTTGCTCCAGGGACACATTGCCAGTCTG
GTGCCGGAGGTGCTGGAGAACATTGAGCCGGCCAGCGATGCCGTTAAGAA
GGAGCAGCTTATGAAGAGCGTCTGCCCGTGGTTGTCCGCCGAGGTGGCCG
AGGAAGTGGGCCATATAGTGGACTCGCGCGAGATTCTCACCGCCATCATT
CAGGAGATTATCAAGCAGCGTGCCGAGATCTATGCCGGCTACAAGGAACC
TGAATCGGAACCATCCGGACCGGATGCGGGCGTTTGTGAGGAGGAGGGCT
GTGCCATCGATGAGATGGAGGCGTGTCCCTGCGAATCGGAAACGGAAATG
GAGGAGTGCCCCGAACCGCCACCACCGGCTCCTCATCTCTAAGTGATTGC
GTTCGAGTTTTAGTTCATATATATATTTCGAGTGGGATACTGATTCCGCA
CACATGTAACACTAACACACTCCTGCTATTAAATCAAGGTTGGCTGCAAC
TTTGTGGTTGTGTCTGGTGAAGAACTCAATTCGCCGCAGGATTCGAATCG
AGCCTGGGCGCCAAACACAATTGCATAGCGGCGGCGGCGAAATGGCATCG
AAAAAATGGAATGGCATATTGTAAACTGGATACTTGTTAAAGGTTTTTGT
GTTACCGAAAATTCAACCAATAAAGCTCAACAAAATAAGCCGAACAAAAA
AAAAAAAAAAAAAA

GH13213.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:36:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG32392-RB 2501 CG32392-RB 1..2499 1..2499 12495 100 Plus
CG32392-RA 1707 CG32392-RA 358..1694 1163..2499 6685 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:56:18
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 6752316..6753495 1162..1 5350 97.3 Minus
chr3L 24539361 chr3L 6749002..6749827 2495..1670 4055 99.4 Minus
chr3L 24539361 chr3L 6749892..6750308 1669..1253 2085 100 Minus
chr3L 24539361 chr3L 6750393..6750485 1253..1161 465 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:48:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:56:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6759941..6761102 1162..1 5810 100 Minus
3L 28110227 3L 6756625..6757454 2499..1670 4150 100 Minus
3L 28110227 3L 6757519..6757935 1669..1253 2085 100 Minus
3L 28110227 3L 6758020..6758112 1253..1161 465 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:58:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 6753041..6754202 1162..1 5810 100 Minus
3L 28103327 3L 6749725..6750554 2499..1670 4150 100 Minus
3L 28103327 3L 6750619..6751035 1669..1253 2085 100 Minus
3L 28103327 3L 6751120..6751212 1253..1161 465 100 Minus
Blast to na_te.dros performed 2019-03-16 16:56:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6952 213..452 178 58 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2347..2535 226..422 154 57.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2632..2838 226..437 120 54.9 Plus

GH13213.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:57:16 Download gff for GH13213.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 6749002..6749827 1670..2495 99 <- Minus
chr3L 6749892..6750307 1254..1669 100 <- Minus
chr3L 6750393..6750485 1161..1253 100 == Minus
chr3L 6752396..6753495 1..1088 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:39:53 Download gff for GH13213.complete
Subject Subject Range Query Range Percent Splice Strand
CG32392-RB 1..1980 213..2192 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:27:25 Download gff for GH13213.complete
Subject Subject Range Query Range Percent Splice Strand
CG32392-RB 1..1980 213..2192 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:49:32 Download gff for GH13213.complete
Subject Subject Range Query Range Percent Splice Strand
CG32392-RB 1..1980 213..2192 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:00:41 Download gff for GH13213.complete
Subject Subject Range Query Range Percent Splice Strand
CG32392-RB 1..1980 213..2192 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:47:55 Download gff for GH13213.complete
Subject Subject Range Query Range Percent Splice Strand
CG32392-RB 1..1980 213..2192 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:26:54 Download gff for GH13213.complete
Subject Subject Range Query Range Percent Splice Strand
CG32392-RB 1..2495 1..2495 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:27:25 Download gff for GH13213.complete
Subject Subject Range Query Range Percent Splice Strand
CG32392-RB 1..2495 1..2495 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:49:32 Download gff for GH13213.complete
Subject Subject Range Query Range Percent Splice Strand
CG32392-RB 13..2507 1..2495 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:00:41 Download gff for GH13213.complete
Subject Subject Range Query Range Percent Splice Strand
CG32392-RB 1..2495 1..2495 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:47:55 Download gff for GH13213.complete
Subject Subject Range Query Range Percent Splice Strand
CG32392-RB 13..2507 1..2495 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:57:16 Download gff for GH13213.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6756629..6757454 1670..2495 100 <- Minus
3L 6757519..6757934 1254..1669 100 <- Minus
3L 6758020..6758110 1163..1253 100 <- Minus
3L 6759941..6761102 1..1162 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:57:16 Download gff for GH13213.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6756629..6757454 1670..2495 100 <- Minus
3L 6757519..6757934 1254..1669 100 <- Minus
3L 6758020..6758110 1163..1253 100 <- Minus
3L 6759941..6761102 1..1162 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:57:16 Download gff for GH13213.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6756629..6757454 1670..2495 100 <- Minus
3L 6757519..6757934 1254..1669 100 <- Minus
3L 6758020..6758110 1163..1253 100 <- Minus
3L 6759941..6761102 1..1162 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:49:32 Download gff for GH13213.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6749729..6750554 1670..2495 100 <- Minus
arm_3L 6750619..6751034 1254..1669 100 <- Minus
arm_3L 6751120..6751210 1163..1253 100 <- Minus
arm_3L 6753041..6754202 1..1162 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:38:32 Download gff for GH13213.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6749729..6750554 1670..2495 100 <- Minus
3L 6750619..6751034 1254..1669 100 <- Minus
3L 6751120..6751210 1163..1253 100 <- Minus
3L 6753041..6754202 1..1162 100   Minus

GH13213.pep Sequence

Translation from 212 to 2191

> GH13213.pep
MPETEQQQHPAHSHPELKPDPQPVPELEHLTDNRPNRVQNFSFASSYPYA
PGRVSSSSNSNTNYSSTNYNAGGFNVQRYQSPYNFQHVVTNAFSVLRHQP
SEEPEFDSYPTRPQQAIVRPIRREAGIADNRDNHVGNPPQRSHFSRSNQE
VRSFADELSQKLRFLAPEEQNYGGRQSANSGAWMDPAMSQRPRFETTVPQ
GIFLPPPHEVQMIPATMLRRHVYAYSSYPMILQGYLTKETGSESKEQKVT
ATRLNGLRATAAVAAATAAASKSSRNDTQSLAGGLHITKAQFQQQLQQRR
STSNNNNNSSSNISDKRPVVPPPEPYKNVMYDRRVIKGSNFGNASLVTDV
DPFDKAAELRRRNMLRKRTMQCRNQRNVLGTPPPVKGRKHETIQTEKYLE
KLVQRPPEFTIDTQTDLFLEKPPTPPFIPAKVGVDVATEIGEGELFHFDA
EAQPIIDVLVDACIEQSMLEVAHEMELSSLRRKQEEFLAQREAELAELRR
LEAEELRLQAEKERRLRQDAIAKELDAEMQKSVTAAKLLQGHIASLVPEV
LENIEPASDAVKKEQLMKSVCPWLSAEVAEEVGHIVDSREILTAIIQEII
KQRAEIYAGYKEPESEPSGPDAGVCEEEGCAIDEMEACPCESETEMEECP
EPPPPAPHL*

GH13213.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:05:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10886-PA 408 GF10886-PA 78..408 326..659 1601 91.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:05:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15023-PA 411 GG15023-PA 69..411 317..659 1765 96.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:05:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17973-PA 665 GH17973-PA 15..663 28..653 2169 69.6 Plus
Dgri\GH16107-PA 404 GH16107-PA 75..402 326..653 1493 84.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG32392-PB 659 CG32392-PB 1..659 1..659 3422 100 Plus
CG32392-PA 411 CG32392-PA 69..411 317..659 1765 99.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:05:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12376-PA 686 GI12376-PA 16..686 28..659 2214 69.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13231-PA 699 GL13231-PA 358..686 317..645 1586 90 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:05:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28596-PA 644 GA28596-PA 34..628 40..642 2247 77.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:05:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13816-PA 723 GM13816-PA 83..706 32..642 2643 88.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:05:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13109-PA 413 GD13109-PA 72..413 318..659 1768 98.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:05:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12266-PA 671 GJ12266-PA 15..671 28..659 2191 71 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:05:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12574-PA 737 GK12574-PA 71..727 1..649 2111 67.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:06:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20467-PA 411 GE20467-PA 78..411 326..659 1615 97 Plus

GH13213.hyp Sequence

Translation from 212 to 2191

> GH13213.hyp
MPETEQQQHPAHSHPELKPDPQPVPELEHLTDNRPNRVQNFSFASSYPYA
PGRVSSSSNSNTNYSSTNYNAGGFNVQRYQSPYNFQHVVTNAFSVLRHQP
SEEPEFDSYPTRPQQAIVRPIRREAGIADNRDNHVGNPPQRSHFSRSNQE
VRSFADELSQKLRFLAPEEQNYGGRQSANSGAWMDPAMSQRPRFETTVPQ
GIFLPPPHEVQMIPATMLRRHVYAYSSYPMILQGYLTKETGSESKEQKVT
ATRLNGLRATAAVAAATAAASKSSRNDTQSLAGGLHITKAQFQQQLQQRR
STSNNNNNSSSNISDKRPVVPPPEPYKNVMYDRRVIKGSNFGNASLVTDV
DPFDKAAELRRRNMLRKRTMQCRNQRNVLGTPPPVKGRKHETIQTEKYLE
KLVQRPPEFTIDTQTDLFLEKPPTPPFIPAKVGVDVATEIGEGELFHFDA
EAQPIIDVLVDACIEQSMLEVAHEMELSSLRRKQEEFLAQREAELAELRR
LEAEELRLQAEKERRLRQDAIAKELDAEMQKSVTAAKLLQGHIASLVPEV
LENIEPASDAVKKEQLMKSVCPWLSAEVAEEVGHIVDSREILTAIIQEII
KQRAEIYAGYKEPESEPSGPDAGVCEEEGCAIDEMEACPCESETEMEECP
EPPPPAPHL*

GH13213.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:39:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG32392-PB 659 CG32392-PB 1..659 1..659 3422 100 Plus
CG32392-PA 411 CG32392-PA 69..411 317..659 1765 99.7 Plus