Clone GH13214 Report

Search the DGRC for GH13214

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:132
Well:14
Vector:pOT2
Associated Gene/TranscriptIntS4-RA
Protein status:GH13214.pep: gold
Preliminary Size:3480
Sequenced Size:3472

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12113 2001-01-01 Release 2 assignment
CG12113 2001-07-04 Blastp of sequenced clone
CG12113 2003-01-01 Sim4 clustering to Release 3
l(1)G0095 2008-04-29 Release 5.5 accounting
l(1)G0095 2008-08-15 Release 5.9 accounting
l(1)G0095 2008-12-18 5.12 accounting

Clone Sequence Records

GH13214.complete Sequence

3472 bp (3472 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051460

> GH13214.complete
AACCAGGTGGAAGAGTGCAACTCTAGTCTGCATTGGTTGAATCGCGCAAA
GGAAAAGGAAACCATGGCGCTGGCCATTAAGAAGCGCGTAGGCACCTACG
TGGAAACGGTGGACGGGTCGCCGCCGGTGAAGAAGCTGCGTCTGCAAACG
CTGGCCGCTGATGCCAAGGGCGGGAAATCCGGAAAAGTGGGCAATGTGGA
GCGCAAGCTGACGGCGCTCAACCAATTGGACGCCTATGTGGGCAACCTGC
CCGCCGGTGCGTTGGTCCTGCCCACTGGGACACCAGTTGCTTCGACGGGA
GCCCCGTCAACAGGTGTCATCGGAAATCCGCCGGCTGCGGCGACTGGAGC
TCCCCCAATGACGGCCGCGAATAGCAGGGAACTGCTGGAGCTCTTGGTCA
AGATAACCGATGAGATATCCTATGAGGACGTGGAAATGGGCGAGCTTAAG
GAGGTGGCCAGCAAGATCTTCCAACTGTATCAGCTGCAGGAACGCGATAG
CGACACCTCCATCCGGGTGAAGCTGCTCGAGCTGCTGTCCGGATTGGGTT
GCGAGTGTGCCACCGAGCAGGCGCTTACCATGATCATCGACTACTTTATC
TTCTTGTTGAGGAAGGAGGTGTCCCAAAAGGTGCTCGCCCAGGGCATGAT
GTGCCTGTTTCGAATCGGGGAGCGCAGGAAGCACATGTTGCCCATATCGT
ACAAAACCCAGGTGGCCCACCTAGCCAAGGAGCAGCTGCGCTCCGGTTCG
GCGCATACGCAGAAGAACGCCATGCTGGTAATCGGTCGTTTTGCCACCAA
AATGGAGGGTGAGCGTCATTACGTATGGAAGTTAGCCTTCTACATCGACT
CGCAGGACTCGAGCGTTCGTGCCCAGGCTCTGCACGCCCTGCTGACCCTC
GGCGAACGGGGATCCCAACTGCCGGCGGTGCTCTATAAGCGTGCCGTCGA
GGCCATGAAGGATGACTACGAGTGTGTGCGCAAGGAAGCTCTACAGCTGG
TCTTCATGCTGGGCAATCGGCATCCGGACTACATTTTACCCTCGGACCGC
CAGCAGGAGGAGCTGCGCATGATAGACGCTGCGTTCAGCAAGGTCTGCGA
AGCCCTGTGCGATCTATCGCTGCAAATTCGCGTGCTCGCAGCGGAATTGC
TCGGTGGGATGACCGCCGTAAGCAGGGAGTTCCTACACCAGACACTCGAC
AAAAAGCTGATGAGCAATCTGCGCCGGAAGCGAACGGCGCACGAGAGAGG
TGCTCGCCTGGTGGCCAGCGGTGAGTGGTCATCGGGTAAACGGTGGGCGG
ACGATGCGCCGCAAGAGCACCTCGATGCTCAGAGCATCTCAATTATAGCC
AGCGGCGCCTGTGGCGCCCTTATACATGGCCTAGAGGATGAGTTCCTCGA
GGTGCGTACTGCGGCAGTGGCCTCCATGTGCAAGCTGGCCCTCTCTCGAC
CGGATTTCGCGGTGACCAGCCTAGATTTCCTTGTGGACATGTTCAACGAT
GAGATCGAGGATGTGCGGCTGAAGGCCATCTATAGTTTAACGGCCATTGC
CAAGCACATAGTGCTGCGCGAGGATCAGCTGGAGATAATGCTTGGATCGC
TTGAGGATTACTCCGTGGACGTGCGTGAGGGACTACATCTCATGCTGGGC
GCCTGTAGAGTGTCCACACAAACGTGCCTGCTAATGGTGGTGCAGAAGCT
GCTAGATGTGCTGGCCAAGTATCCACAGGATCGTAACTCCACCTATGCCT
GCATGCGCAAGATTGGCCAGAAGCATCCACATTTGGTGATGGCTGTCGCC
GTTCACCTGCTTTACGTGCATCCCTTTTTCGAGACGCCCGAACGCGATGT
CGAGGATCCAGCGTATCTGTGCGTTCTGATACTTGTCTTCAATGCTGCAG
AACATTTGGTGCCCATTATCAGTTTGCTGCCCACGGCCACCCATCGCCAT
TACGCCTATCTGAGAGACTCGATGCCGAATCTGGTGCCCCAGTTGCCCAT
TGAGGGTGCGTCCTCGGCGAGTGCGACGCACAGGATCGATTCGGCTATGC
ACCAAGCGGGCAGTTCGGCGGAGTACCTGCAGATGATTCTCAGTCACATC
GAAGAGATCTTCACCATGACTGACGAGCGCTTGGAGCTGCTCCAGACTGC
CCAATCTAATCTGCAGCGCCTGGGATCCATTGATGCGGGCATGTACGGCA
CCTCAAACTTTCTAGAGACCTTCTTGGCGGCCCAGATCCAGATCGAACAG
ATGCAGCGTTGCGCCAGCACGCAACGAAGCAGGGTGCCCTTGAAGGAATC
ACTGGCAGCACTCATCCGAAACTGTCTCAAGCTGCAGCACACTTTCTCCG
GCCTCAATTACGGCGATATCTTGCAGGTGAAGCAGCTGCGCCTGAGGGCT
TGCGCGCTTCACTTGGTCCTCGTGGTCAGGGATCGCTCACAGAGTGCATT
GGGCCCGTGCCAGATGCTTTTGCAAACCGCCGGCGATATAAGTGAGTTCA
TCAAGGCGAATACGAAGGATGAGGAGGAGAAGCCACCGGTGGTAGAGACC
GATATGCCCATGAAAGAGTCGGTCAGTAGGGATGCCCAGCCGGATAGCTT
CACCCGCCAGCTGCTAATCAAACTGGATGGCATATCGGATCCCAAGCCGG
GTCGCGTCTTTCGCGAAATTCTGCCGCTGGTCCAGCAGGCTCCTCCGCTT
GCATTGCCACCCGCCAATGACAAAATACGCCGCTGTGTGGCCAACATCCT
TGAGCCGTGTCCGCTGCAATCGCAGGATAATGTAATTAAGGTCACGGCTG
GCCTGATAGCAGCCGTTCCTTTTGTTGCGGAAATCGACAATCTGCTGGAG
TCCCAGAAGGCGGACATGCGGATCAAGATCAAGTATCCGGACCAGCACAT
GCACACCGTGGTGCCGAAGCAGAGTGACTTCAAGCCCATTATGACGGAGC
AGGGCGAGCACAAGACCAATGTGCGCCTGCGCACCACAATCCTGCTGTCG
CACAGCGTTTGGACGGAGTCGTCGCTGGTGGAGATCCAACTGTGCCTGGC
CGTGCGTCCCGGCAGCGAACTGGAGCTCTGCAAGCCGGCAAAGGTGCTGT
TCGCACCCAAACCAGTCAGGCGGGGCATTTAGCCTGACTTCCAGGTAATG
GACTAGGTGCTTTTTGTCCTGGCGACGCGGAGCGAGAAGCTGACAAGGCC
ACACAGCCGCTGGAGGAGGAGGAGAAGGAGGGGGAGGAGGAGAGCCCAGG
GAATTGGCGCAACGAGCAACTGTTATTTAAATATATGTATGTGATTGTTT
AAGATACCATAGCAGTTGGTTGCCAAAGTTCTTTCTAAATCGAAAAAACC
GAATGTTTAGAGCATCAGTTGTGCGTAGCTTACTTATATCATAATCATAT
GTTTAAGATGAATTCATTTCAAATAAAGTGTGTACCATAAATCTTTAAAA
AAAAAAAAAAAAAAAAAAAAAA

GH13214.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:36:37
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0095-RA 3542 l(1)G0095-RA 89..3541 1..3453 17250 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:58:06
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8448315..8450480 2166..1 10800 99.9 Minus
chrX 22417052 chrX 8446957..8448238 3446..2165 6380 99.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:48:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:58:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8556596..8558761 2166..1 10830 100 Minus
X 23542271 X 8555232..8556520 3453..2165 6430 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:58:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 8564694..8566859 2166..1 10830 100 Minus
X 23527363 X 8563330..8564618 3453..2165 6430 99.9 Minus
Blast to na_te.dros performed on 2019-03-15 17:58:04 has no hits.

GH13214.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:58:55 Download gff for GH13214.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8446957..8448236 2167..3446 97 <- Minus
chrX 8448315..8450480 1..2166 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:39:54 Download gff for GH13214.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0095-RA 1..3069 64..3132 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:27:26 Download gff for GH13214.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0095-RA 1..3069 64..3132 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:51:33 Download gff for GH13214.complete
Subject Subject Range Query Range Percent Splice Strand
IntS4-RA 1..3069 64..3132 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:00:42 Download gff for GH13214.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0095-RA 1..3069 64..3132 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:51:33 Download gff for GH13214.complete
Subject Subject Range Query Range Percent Splice Strand
IntS4-RA 1..3069 64..3132 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:26:56 Download gff for GH13214.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0095-RA 1..3442 1..3442 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:27:26 Download gff for GH13214.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0095-RA 1..3442 1..3442 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:51:33 Download gff for GH13214.complete
Subject Subject Range Query Range Percent Splice Strand
IntS4-RA 21..3466 1..3446 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:00:42 Download gff for GH13214.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0095-RA 1..3442 1..3442 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:51:33 Download gff for GH13214.complete
Subject Subject Range Query Range Percent Splice Strand
IntS4-RA 21..3466 1..3446 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:58:55 Download gff for GH13214.complete
Subject Subject Range Query Range Percent Splice Strand
X 8555239..8556518 2167..3446 100 <- Minus
X 8556596..8558761 1..2166 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:58:55 Download gff for GH13214.complete
Subject Subject Range Query Range Percent Splice Strand
X 8555239..8556518 2167..3446 100 <- Minus
X 8556596..8558761 1..2166 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:58:55 Download gff for GH13214.complete
Subject Subject Range Query Range Percent Splice Strand
X 8555239..8556518 2167..3446 100 <- Minus
X 8556596..8558761 1..2166 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:51:33 Download gff for GH13214.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8449272..8450551 2167..3446 100 <- Minus
arm_X 8450629..8452794 1..2166 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:38:33 Download gff for GH13214.complete
Subject Subject Range Query Range Percent Splice Strand
X 8563337..8564616 2167..3446 100 <- Minus
X 8564694..8566859 1..2166 100   Minus

GH13214.hyp Sequence

Translation from 1 to 3131

> GH13214.hyp
NQVEECNSSLHWLNRAKEKETMALAIKKRVGTYVETVDGSPPVKKLRLQT
LAADAKGGKSGKVGNVERKLTALNQLDAYVGNLPAGALVLPTGTPVASTG
APSTGVIGNPPAAATGAPPMTAANSRELLELLVKITDEISYEDVEMGELK
EVASKIFQLYQLQERDSDTSIRVKLLELLSGLGCECATEQALTMIIDYFI
FLLRKEVSQKVLAQGMMCLFRIGERRKHMLPISYKTQVAHLAKEQLRSGS
AHTQKNAMLVIGRFATKMEGERHYVWKLAFYIDSQDSSVRAQALHALLTL
GERGSQLPAVLYKRAVEAMKDDYECVRKEALQLVFMLGNRHPDYILPSDR
QQEELRMIDAAFSKVCEALCDLSLQIRVLAAELLGGMTAVSREFLHQTLD
KKLMSNLRRKRTAHERGARLVASGEWSSGKRWADDAPQEHLDAQSISIIA
SGACGALIHGLEDEFLEVRTAAVASMCKLALSRPDFAVTSLDFLVDMFND
EIEDVRLKAIYSLTAIAKHIVLREDQLEIMLGSLEDYSVDVREGLHLMLG
ACRVSTQTCLLMVVQKLLDVLAKYPQDRNSTYACMRKIGQKHPHLVMAVA
VHLLYVHPFFETPERDVEDPAYLCVLILVFNAAEHLVPIISLLPTATHRH
YAYLRDSMPNLVPQLPIEGASSASATHRIDSAMHQAGSSAEYLQMILSHI
EEIFTMTDERLELLQTAQSNLQRLGSIDAGMYGTSNFLETFLAAQIQIEQ
MQRCASTQRSRVPLKESLAALIRNCLKLQHTFSGLNYGDILQVKQLRLRA
CALHLVLVVRDRSQSALGPCQMLLQTAGDISEFIKANTKDEEEKPPVVET
DMPMKESVSRDAQPDSFTRQLLIKLDGISDPKPGRVFREILPLVQQAPPL
ALPPANDKIRRCVANILEPCPLQSQDNVIKVTAGLIAAVPFVAEIDNLLE
SQKADMRIKIKYPDQHMHTVVPKQSDFKPIMTEQGEHKTNVRLRTTILLS
HSVWTESSLVEIQLCLAVRPGSELELCKPAKVLFAPKPVRRGI*

GH13214.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:39:44
Subject Length Description Subject Range Query Range Score Percent Strand
IntS4-PA 1022 CG12113-PA 1..1022 22..1043 5167 100 Plus

GH13214.pep Sequence

Translation from 63 to 3131

> GH13214.pep
MALAIKKRVGTYVETVDGSPPVKKLRLQTLAADAKGGKSGKVGNVERKLT
ALNQLDAYVGNLPAGALVLPTGTPVASTGAPSTGVIGNPPAAATGAPPMT
AANSRELLELLVKITDEISYEDVEMGELKEVASKIFQLYQLQERDSDTSI
RVKLLELLSGLGCECATEQALTMIIDYFIFLLRKEVSQKVLAQGMMCLFR
IGERRKHMLPISYKTQVAHLAKEQLRSGSAHTQKNAMLVIGRFATKMEGE
RHYVWKLAFYIDSQDSSVRAQALHALLTLGERGSQLPAVLYKRAVEAMKD
DYECVRKEALQLVFMLGNRHPDYILPSDRQQEELRMIDAAFSKVCEALCD
LSLQIRVLAAELLGGMTAVSREFLHQTLDKKLMSNLRRKRTAHERGARLV
ASGEWSSGKRWADDAPQEHLDAQSISIIASGACGALIHGLEDEFLEVRTA
AVASMCKLALSRPDFAVTSLDFLVDMFNDEIEDVRLKAIYSLTAIAKHIV
LREDQLEIMLGSLEDYSVDVREGLHLMLGACRVSTQTCLLMVVQKLLDVL
AKYPQDRNSTYACMRKIGQKHPHLVMAVAVHLLYVHPFFETPERDVEDPA
YLCVLILVFNAAEHLVPIISLLPTATHRHYAYLRDSMPNLVPQLPIEGAS
SASATHRIDSAMHQAGSSAEYLQMILSHIEEIFTMTDERLELLQTAQSNL
QRLGSIDAGMYGTSNFLETFLAAQIQIEQMQRCASTQRSRVPLKESLAAL
IRNCLKLQHTFSGLNYGDILQVKQLRLRACALHLVLVVRDRSQSALGPCQ
MLLQTAGDISEFIKANTKDEEEKPPVVETDMPMKESVSRDAQPDSFTRQL
LIKLDGISDPKPGRVFREILPLVQQAPPLALPPANDKIRRCVANILEPCP
LQSQDNVIKVTAGLIAAVPFVAEIDNLLESQKADMRIKIKYPDQHMHTVV
PKQSDFKPIMTEQGEHKTNVRLRTTILLSHSVWTESSLVEIQLCLAVRPG
SELELCKPAKVLFAPKPVRRGI*

GH13214.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21815-PA 1024 GF21815-PA 1..1024 1..1022 4591 85 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19041-PA 1027 GG19041-PA 1..1027 1..1022 5133 93.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24735-PA 1036 GH24735-PA 1..1036 1..1022 4273 78.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:14
Subject Length Description Subject Range Query Range Score Percent Strand
IntS4-PA 1022 CG12113-PA 1..1022 1..1022 5167 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14774-PA 1004 GI14774-PA 1..1004 1..1022 4355 81 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22679-PA 463 GL22679-PA 1..463 567..1022 2086 84.9 Plus
Dper\GL22668-PA 472 GL22668-PA 15..450 39..459 1535 70 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:06:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11407-PA 1025 GA11407-PA 1..1025 1..1022 4442 81.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:06:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21257-PA 1004 GM21257-PA 1..1004 1..1022 5248 96.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:06:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19026-PA 261 GD19026-PA 1..257 1..257 1210 94.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18819-PA 1004 GJ18819-PA 1..1004 1..1022 4393 81.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:06:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25115-PA 1056 GK25115-PA 1..1056 1..1022 4399 80.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:06:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17446-PA 1025 GE17446-PA 1..1025 1..1022 5140 94.8 Plus