Clone GH13256 Report

Search the DGRC for GH13256

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:132
Well:56
Vector:pOT2
Associated Gene/TranscriptThiolase-RA
Protein status:GH13256.pep: gold
Preliminary Size:1610
Sequenced Size:1576

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4581 2001-01-01 Release 2 assignment
CG4581 2001-11-08 Blastp of sequenced clone
CG4581 2003-01-01 Sim4 clustering to Release 3
Thiolase 2008-04-29 Release 5.5 accounting
Thiolase 2008-08-15 Release 5.9 accounting
Thiolase 2008-12-18 5.12 accounting

Clone Sequence Records

GH13256.complete Sequence

1576 bp (1576 high quality bases) assembled on 2001-11-08

GenBank Submission: AY069124

> GH13256.complete
AAAAGCGAGAAAAGAAATCAGAAAACTTTCGCAAGATGAGCCTTCAAAAT
GTCTGCCGCAAGGGTAACGCCTTCAACCTGTTGAATGTCGCCAGGAAAGT
TCAATGCCGCGCTCTATCGGCCGCTGTGGCGAATCCACAACCGAAGCAGA
AGAACAGCCAGAATATCGTGCTCGTGGATGGAGTCCGCACACCCTTTCTG
ACCTCCGGAACCACCTACTCCAAGCTGATGCCCCATGAACTGGCCAGGCA
CTCGCTTTTGTCATTGCTGCAAAAGAACCGCCTGGACAAGGAGCTCATCG
ACTACATCGTGTACGGCAGCGTCATCCAGGAGGTGAAGACCTCCAACATT
GCCAGGGAGGCAGCCTTGGCAGCTGGATTCAGCAACAAGACACCTGCCCA
CACCGTCACCATGGCCTGCATCAGTTCCAATGCGGCCATCACCACGGGCA
TGGGTCTGATAGCCACCAACACCTACGATGTCATCGTTGCCGGCGGCGTG
GAGTTCATGTCCGATGTGCCCATTCGCCACTCCCGCAAGATGCGCTCCCT
GCTCCTGAAAGCCAACAAGGCAAAGACCCTGGGCCAGCGGCTGGCCCTGC
TGTCCACCTTCAGGCCAGACTTCCTGGCCCCCGAGCTGCCCGCCGTTGCG
GAGTTCTCCTCCGGCGAGACCATGGGACACTCGGCCGATCGCTTGGCATC
CGCCTTCAACGTATCCCGGAGCGAGCAGGACGAGTACGCCCTGCGATCCC
ACACACTGGCCAAGGAGGCCCAGGAGAAGGGCTACTTCACCGATCTGGTT
CCCTTCAAGGTGTCCGGCGTGGACCAGATCGTGGACAAGGACAACGGCAT
CCGCGTGTCTAGTCCCGAGAGCCTGGCAAAGCTGAGGCCCGCCTTTGTGA
AGCCCTACGGCACTGTGACAGCAGCCAACGCCTCCTTCCTCACGGACGGA
GCTTCTGCTTGCATTATCATGACCGAGGAGAAGGCCAAGCAGCTGGGCCT
CAAGCCCAAGGCCTATCTGCGCGACTTCCTGTTCGTGTCGCAGGATCCCG
TCAACCAGCTGCTGCTGGGACCCGCCTACGGAATTCCCAAGCTGCTCAAG
AAGGCTGGACTCACGCTGAAGGACATTGACTCGTGGGAGATCCACGAGGC
GTTCGCCGGACAGATCGTGGCCAATCTGAAGGCCCTGGACTCCGACTGGT
TCTGCAAGACTTACTTGGGCCTGAACGAGAAGGTCGGCACTCCCGACCTG
TCCAAGTGGAACAACTGGGGCGGTTCTCTGTCCATCGGCCACCCCTTCGC
CGCCACAGGAGTCCGCCTCTGCATGCACACCGCCAACCGCCTGGTGCGCG
AGGATGGCAAGTTGGGCGTGGTCGCCGCCTGCGCGGCCGGTGGACAGGGC
GTGGCTATGCTCATTGAGCGCTATCCGGGCGCCACAGCCGACTGAAATCG
CCAATTAATCGACAAGGAGGAGAGTGCAGTTTAACTGCGAGATTGCTAGC
TTTTATACACCTTACAACTACGTCTATACGAATAAAGAAATCTGAATTTT
AAAAAAAAAAAAAAAAAAAAAAAAAA

GH13256.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:01:10
Subject Length Description Subject Range Query Range Score Percent Strand
Thiolase-RA 1654 Thiolase-RA 58..1613 1..1556 7765 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:20:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19752691..19753807 1550..434 5555 99.8 Minus
chr2R 21145070 chr2R 19753862..19754037 435..260 880 100 Minus
chr2R 21145070 chr2R 19754094..19754257 261..98 820 100 Minus
chr2R 21145070 chr2R 19754505..19754603 99..1 495 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:48:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:20:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23866642..23867764 1556..434 5600 99.9 Minus
2R 25286936 2R 23867819..23867994 435..260 880 100 Minus
2R 25286936 2R 23868051..23868214 261..98 820 100 Minus
2R 25286936 2R 23868462..23868560 99..1 495 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:25:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23867841..23868963 1556..434 5600 99.9 Minus
2R 25260384 2R 23869018..23869193 435..260 880 100 Minus
2R 25260384 2R 23869250..23869413 261..98 820 100 Minus
2R 25260384 2R 23869661..23869759 99..1 495 100 Minus
Blast to na_te.dros performed on 2019-03-15 15:20:45 has no hits.

GH13256.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:21:33 Download gff for GH13256.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19752691..19753806 435..1550 99 <- Minus
chr2R 19753863..19754037 260..434 100 <- Minus
chr2R 19754096..19754255 100..259 100 <- Minus
chr2R 19754505..19754603 1..99 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:40:06 Download gff for GH13256.complete
Subject Subject Range Query Range Percent Splice Strand
Thiolase-RA 1..1410 36..1445 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:34:42 Download gff for GH13256.complete
Subject Subject Range Query Range Percent Splice Strand
Thiolase-RA 1..1410 36..1445 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:24:58 Download gff for GH13256.complete
Subject Subject Range Query Range Percent Splice Strand
Thiolase-RA 1..1410 36..1445 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:02:14 Download gff for GH13256.complete
Subject Subject Range Query Range Percent Splice Strand
Thiolase-RA 1..1410 36..1445 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:03:08 Download gff for GH13256.complete
Subject Subject Range Query Range Percent Splice Strand
Thiolase-RA 1..1410 36..1445 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:14:22 Download gff for GH13256.complete
Subject Subject Range Query Range Percent Splice Strand
Thiolase-RA 57..1606 1..1550 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:34:42 Download gff for GH13256.complete
Subject Subject Range Query Range Percent Splice Strand
Thiolase-RA 57..1606 1..1550 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:24:58 Download gff for GH13256.complete
Subject Subject Range Query Range Percent Splice Strand
Thiolase-RA 44..1593 1..1550 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:02:14 Download gff for GH13256.complete
Subject Subject Range Query Range Percent Splice Strand
Thiolase-RA 57..1606 1..1550 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:03:08 Download gff for GH13256.complete
Subject Subject Range Query Range Percent Splice Strand
Thiolase-RA 44..1593 1..1550 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:21:33 Download gff for GH13256.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23866648..23867763 435..1550 100 <- Minus
2R 23867820..23867994 260..434 100 <- Minus
2R 23868053..23868212 100..259 100 <- Minus
2R 23868462..23868560 1..99 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:21:33 Download gff for GH13256.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23866648..23867763 435..1550 100 <- Minus
2R 23867820..23867994 260..434 100 <- Minus
2R 23868053..23868212 100..259 100 <- Minus
2R 23868462..23868560 1..99 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:21:33 Download gff for GH13256.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23866648..23867763 435..1550 100 <- Minus
2R 23867820..23867994 260..434 100 <- Minus
2R 23868053..23868212 100..259 100 <- Minus
2R 23868462..23868560 1..99 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:24:58 Download gff for GH13256.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19754171..19755286 435..1550 100 <- Minus
arm_2R 19755343..19755517 260..434 100 <- Minus
arm_2R 19755576..19755735 100..259 100 <- Minus
arm_2R 19755985..19756083 1..99 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:39:17 Download gff for GH13256.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23869037..23869211 260..434 100 <- Minus
2R 23869270..23869429 100..259 100 <- Minus
2R 23869679..23869777 1..99 100   Minus
2R 23867865..23868980 435..1550 100 <- Minus

GH13256.hyp Sequence

Translation from 2 to 1444

> GH13256.hyp
KREKKSENFRKMSLQNVCRKGNAFNLLNVARKVQCRALSAAVANPQPKQK
NSQNIVLVDGVRTPFLTSGTTYSKLMPHELARHSLLSLLQKNRLDKELID
YIVYGSVIQEVKTSNIAREAALAAGFSNKTPAHTVTMACISSNAAITTGM
GLIATNTYDVIVAGGVEFMSDVPIRHSRKMRSLLLKANKAKTLGQRLALL
STFRPDFLAPELPAVAEFSSGETMGHSADRLASAFNVSRSEQDEYALRSH
TLAKEAQEKGYFTDLVPFKVSGVDQIVDKDNGIRVSSPESLAKLRPAFVK
PYGTVTAANASFLTDGASACIIMTEEKAKQLGLKPKAYLRDFLFVSQDPV
NQLLLGPAYGIPKLLKKAGLTLKDIDSWEIHEAFAGQIVANLKALDSDWF
CKTYLGLNEKVGTPDLSKWNNWGGSLSIGHPFAATGVRLCMHTANRLVRE
DGKLGVVAACAAGGQGVAMLIERYPGATAD*

GH13256.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:40:13
Subject Length Description Subject Range Query Range Score Percent Strand
Thiolase-PA 469 CG4581-PA 1..469 12..480 2385 100 Plus
CG9149-PA 392 CG9149-PA 3..390 54..473 446 30 Plus
CG10932-PB 410 CG10932-PB 25..409 55..473 441 29.1 Plus
CG10932-PA 410 CG10932-PA 25..409 55..473 441 29.1 Plus
yip2-PA 398 CG4600-PA 5..396 52..472 400 32.1 Plus

GH13256.pep Sequence

Translation from 35 to 1444

> GH13256.pep
MSLQNVCRKGNAFNLLNVARKVQCRALSAAVANPQPKQKNSQNIVLVDGV
RTPFLTSGTTYSKLMPHELARHSLLSLLQKNRLDKELIDYIVYGSVIQEV
KTSNIAREAALAAGFSNKTPAHTVTMACISSNAAITTGMGLIATNTYDVI
VAGGVEFMSDVPIRHSRKMRSLLLKANKAKTLGQRLALLSTFRPDFLAPE
LPAVAEFSSGETMGHSADRLASAFNVSRSEQDEYALRSHTLAKEAQEKGY
FTDLVPFKVSGVDQIVDKDNGIRVSSPESLAKLRPAFVKPYGTVTAANAS
FLTDGASACIIMTEEKAKQLGLKPKAYLRDFLFVSQDPVNQLLLGPAYGI
PKLLKKAGLTLKDIDSWEIHEAFAGQIVANLKALDSDWFCKTYLGLNEKV
GTPDLSKWNNWGGSLSIGHPFAATGVRLCMHTANRLVREDGKLGVVAACA
AGGQGVAMLIERYPGATAD*

GH13256.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:29:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12060-PA 470 GF12060-PA 1..470 1..469 2410 95.3 Plus
Dana\GF21242-PA 414 GF21242-PA 29..413 44..462 436 29.3 Plus
Dana\GF24451-PA 392 GF24451-PA 3..390 43..462 426 29.5 Plus
Dana\GF15724-PA 398 GF15724-PA 5..396 41..461 413 33.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:29:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19986-PA 469 GG19986-PA 1..469 1..469 2470 98.1 Plus
Dere\GG14778-PA 392 GG14778-PA 3..390 43..462 454 30.1 Plus
Dere\GG17603-PA 410 GG17603-PA 25..409 44..462 444 29.3 Plus
Dere\GG10063-PA 398 GG10063-PA 5..396 41..461 409 33.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:29:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20195-PA 405 GH20195-PA 1..405 65..469 2022 90.6 Plus
Dgri\GH17897-PA 409 GH17897-PA 19..408 39..462 456 29.7 Plus
Dgri\GH15449-PA 392 GH15449-PA 3..390 43..462 443 30.1 Plus
Dgri\GH11301-PA 398 GH11301-PA 5..396 41..461 416 32.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:22
Subject Length Description Subject Range Query Range Score Percent Strand
Thiolase-PA 469 CG4581-PA 1..469 1..469 2385 100 Plus
CG9149-PA 392 CG9149-PA 3..390 43..462 446 30 Plus
CG10932-PB 410 CG10932-PB 25..409 44..462 441 29.1 Plus
CG10932-PA 410 CG10932-PA 25..409 44..462 441 29.1 Plus
yip2-PA 398 CG4600-PA 5..396 41..461 400 32.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:29:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20722-PA 469 GI20722-PA 1..469 1..469 2227 87.8 Plus
Dmoj\GI13050-PA 392 GI13050-PA 3..390 43..462 500 32.7 Plus
Dmoj\GI15420-PA 408 GI15420-PA 22..407 43..462 450 28.5 Plus
Dmoj\GI17721-PA 398 GI17721-PA 5..396 41..461 432 33.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:29:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10924-PA 471 GL10924-PA 1..471 1..469 2381 94.1 Plus
Dper\GL16175-PA 392 GL16175-PA 3..390 43..462 486 32.5 Plus
Dper\GL14584-PA 412 GL14584-PA 25..411 42..462 435 28.5 Plus
Dper\GL18942-PA 398 GL18942-PA 5..396 41..461 411 32.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:29:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18273-PA 471 GA18273-PA 1..471 1..469 2381 94.1 Plus
Dpse\GA21576-PA 392 GA21576-PA 3..390 43..462 484 32.5 Plus
Dpse\GA10651-PA 412 GA10651-PA 25..411 42..462 434 28.5 Plus
Dpse\GA18290-PA 398 GA18290-PA 5..396 41..461 411 32.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:29:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15500-PA 469 GM15500-PA 1..469 1..469 2491 99.1 Plus
Dsec\GM14397-PA 392 GM14397-PA 3..390 43..462 449 29.7 Plus
Dsec\GM11967-PA 410 GM11967-PA 25..409 44..462 444 29.1 Plus
Dsec\GM17755-PA 398 GM17755-PA 5..396 41..461 413 32.8 Plus
Dsec\GM12955-PA 311 GM12955-PA 3..299 43..354 303 28.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:29:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25003-PA 469 GD25003-PA 1..469 1..469 2491 99.1 Plus
Dsim\GD13606-PA 392 GD13606-PA 3..390 43..462 448 29.7 Plus
Dsim\GD24579-PA 410 GD24579-PA 25..409 44..462 442 29.1 Plus
Dsim\GD23636-PA 397 GD23636-PA 29..395 66..461 412 33.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20459-PA 443 GJ20459-PA 8..443 35..469 2185 92 Plus
Dvir\GJ12146-PA 392 GJ12146-PA 3..390 43..462 469 31.1 Plus
Dvir\GJ16378-PA 408 GJ16378-PA 22..407 43..462 452 30 Plus
Dvir\GJ17549-PA 398 GJ17549-PA 5..396 41..461 425 32.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15863-PA 473 GK15863-PA 1..473 1..469 2317 90.9 Plus
Dwil\GK20386-PA 392 GK20386-PA 3..390 43..462 470 31.1 Plus
Dwil\GK10115-PA 413 GK10115-PA 27..412 43..462 430 28.5 Plus
Dwil\GK18280-PA 398 GK18280-PA 5..396 41..461 405 31.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:29:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11519-PA 469 GE11519-PA 1..469 1..469 2476 98.3 Plus
Dyak\GE21141-PA 392 GE21141-PA 3..390 43..462 453 29.9 Plus
Dyak\GE17503-PA 410 GE17503-PA 25..409 44..462 440 29.3 Plus
Dyak\yip2-PA 398 GE18877-PA 5..396 41..461 417 32.7 Plus