Clone GH13260 Report

Search the DGRC for GH13260

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:132
Well:60
Vector:pOT2
Associated Gene/Transcriptsu(r)-RC
Protein status:GH13260.pep: gold
Sequenced Size:3392

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
su(r) 2008-04-29 Picked prior to 5.5
su(r) 2008-08-15 Release 5.9 accounting
su(r) 2008-12-18 5.12 accounting

Clone Sequence Records

GH13260.complete Sequence

3392 bp assembled on 2008-05-16

GenBank Submission: BT032682

> GH13260.complete
TGAAGACCAATTCGAATTTTTCGTGTTTTTTTTTTTAGTCGCCAAACCGT
CGCCAGTCGATTTTCACTCCAGCTAGTGAATAGCTATTATTATTATTTTT
TTTCGCTGTGCTAATCTAAAGATTCTAATAAAAAAAAGTGTTCATAAATT
AGCTAATAACGTTCCTTCGATCGGTGAAACAGTGCCAGCAAGATGAGTCC
GCCCCAACTTTTGAGCAAGGACTCCCCAGATATTGAGGACCTGCTGTCGC
TAAATCCGCGAGTGAAGACGCAGTGCTCCGTGGTGCCCACCAAGCAGACG
AAGGAGAACAAGAAGCACTGGAAACGCAATGCGGATCACGCTGCTCCGCC
GTGCACCACGCTGGCCAACGACTTCTCGGACATCAAGCACACCACATTGT
CGGAGCGCGGAGCTCTAGAGGAGGCGGCCAGGTGCCTCAAATGCGCCGAT
GCTCCGTGCCAAAAGTCCTGTCCCACGCAGCTGGACATCAAGAGCTTCAT
TACGAGCATTGCGAATAAGAATTTCTATGGCGCCGCCAAGGCGATCTTCT
CCGACAATCCGCTGGGTCTGACCTGCGGCATGGTCTGTCCCACCAGCGAT
CTCTGCGTGGGCGGTTGCAATCTGCAGGCCTCCGAGGCGGGACCGATTAA
CATTGGTGGCCTCCAGCAGTTCGCCACCGAGGTGTTCAAGAAGATGGGCG
TGCGGCAGCGGAGGACACCGCAGGCGGAGGCCAATCCGCTGTCGCAAAAG
ATCGCCCTCGTGGGCGGCGGACCGGCATCGCTGTCGTGCGCCACCTTCCT
GGCCCGTCTGGGCTATCGGGATGTGACCATCTACGAGCGGAGAAGCTATC
TGGGTGGCCTGAGTGCCGCTGAAATTCCCCAGTATCGTCTGCCCATCGAT
GCGGTTAACTTTGAGATCGATTTGGTTCGCGATCTGGGCGTACGCATCGA
AACGGGTCGCTCGCTGGGCACCAAGGATTTGACCATCCAGGGACTCCTGT
CCACCGGCCATGATGCCGTCTTTGTGGGCATTGGCCTGCCGGAACCGAAG
CTGAATCCCATTTTCGCTGGCCTTCAGCCCAGCAATGGTTTCTACACCTC
GAAAAACTTCCTGCCCTTGGTGTCGGATGGCTCGAAACCGGGTTTGTGCG
CCTGCAAGGCAGCGGCCGGTTTACCCAAGCTCCATGGCAATGTCATCGTT
TTGGGTGCCGGTGATACGGCCTTCGATTGCGCCACTTCGGCGCTGAGATG
TGGTGCTAGGCGTGTGTTCGTCGTCTTCCGCAAAGGATCCTCCGGCATTC
GTGCTGTGCCCGAAGAGGTGGAGCTGGCGCGTGACGAACGCTGTGAGCTG
TTGCCGTACCTGAGTCCACGCAAAGTGATCGTCAAGGATGGCCTGATCAC
AGCCATGGAATTCTGTCGCACGGAGCAGAACGAAAACGATGAATGGGTGG
AGGATGAGGAGCAGACGCAGCGCTTGAAGGCGAACTTTGTGATCTCCGCC
TTTGGGTCCGGCCTGGAGGATCAGGATGTCAAGGCGGCACTAGCGCCGTT
GCAATTCCGCGGCGAATTGCCCGTGGTGGACAGGGTGACGATGCAGAGCA
GTGTGAAACAGGTGTTCCTCGGCGGCGATCTCGCTGGAGTGGCCAACACC
ACGGTGGAGTCGGTCAATGATGGCAAGGTGGCCGCCTGGAGCATTCATTG
TCAACTGCAGGGCCTGCCACTGGACACGCCGGCTGCACTGCCGCTCTTCT
ATACGGACATCGATGCCGTGGACATATCGGTGGAGATGTGCGGCATCCGG
TTCGAGAATCCCTTTGGCCTGGCCTCCGCACCGCCCACCACCAGCACGGC
CATGATACGTCGCGCCTTCGAGCAGGGCTGGGGCTTTGTGGTGACCAAGA
CGTTCGGTCTGGACAAGGATCTGGTCACGAATGTCTCGCCGCGCATCGTC
AGGGGCACCACGTCGGGCTACAAGTATGGACCGCAGCAGGGCTGTTTCCT
GAACATCGAACTAATCTCGGAGAAGCGGGCCGAGTACTGGCTGAAATCGA
TTGGAGAACTGAAGCGTGACTTCCCCGAGAAGATCGTGATAGCCAGCATT
ATGTGCAGCTTCAACGAGGAAGACTGGACGGAGTTGGCCATTAAGGCGGA
GCAGTCGGGTGCCGATGCCCTCGAGCTGAATCTATCGTGTCCACATGGCA
TGGGCGAGCGAGGTATGGGCTTGGCCTGTGGCCAGGATCCCGAGTTGGTG
GAGCAGATCTCTCGCTGGGTGCGAAAGGCGGTCAAGCTGCCCTTCTTCAT
CAAGCTAACGCCAAACATTACGGATATCGTTTCCATTGCGGCGGCCGCAA
AGCGGGGAGGAGCCGATGGCGGATCGGCCATCAACACCGTTCAGGGACTG
ATGGGCCTCAAGGCGGACTCCACCGCCTGGCCGGCGATTGGCAAGGAGCA
GCGCACCACTTACGGCGGCGTCTCCGGCAATGCCACTCGTCCGATGGCTC
TGAAGGCCATCTCTGATATTGCCAACCGTGTGCCGGGATTCCCCATTCTC
GGTATCGGTGGCATCGATTCCGGTGAGGTTGCGCTGCAGTTTATTCATGC
GGGCGCCACTGTTCTGCAGATCTGCTCCTCCGTACAGAACCAGGACTTCA
CCGTCATCGAGGACTATTGCACGGCACTGAAGGCACTGCTCTACCTGAAG
GCGAATCCGCCACCAGTCGATGGTCCCTTCTGGGATGGCCAGTCACCACC
CACGCCGGTCCATCAGAAGGGCAAGCCCGTTGTCCGTTTGACCGGCGAGG
GCAAAGCCACGCTGGGTTTCTTTGGTCCCTACCAGCGGCAGCGCGACATC
AAGATGGCCGAGCTGCGAAGTCAGAAGGGAGCTCTTTGGGATGCCGAGCA
GGTGAAGGCCACTCCTCCGGCGTCCAATGGAGCACCCAATCCGGCACCAA
GAATCAAGGATGTGATCGGAGCAGCGCTAGACAAGATCGGGTCATACAAC
AAGCTGGATAACAAACAACAGAAGGTGGCGCTCATCGATGATGACATGTG
CATAAACTGCGGAAAGTGCTATATGACCTGCGCCGATTCCGGCTACCAGG
CCATCGAATTCGACAAGGACACCCACATTCCGCACGTGAACGACGATTGC
ACGGGCTGCACACTCTGCGTCTCCGTTTGTCCCATCATCGACTGCATCAC
CATGGTGCCCAAGAAGATTCCGCACGTGATCAAGCGAGGAGTCGAGGAGA
AGATCTTCTACACCCACGCTCTCAGCCAGTGCCAGTAAAAGTCCCTAGTT
CTACGCGAAATACCGATAGTAAATTCCAATCTATGTAATTCAATTAAATA
CAAAACATGTTTCAAAAGCAGAAAAAAAAAAAAAAAAAAAAA

GH13260.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:02:33
Subject Length Description Subject Range Query Range Score Percent Strand
su(r)-RC 3448 su(r)-RC 39..3411 1..3373 16865 100 Plus
su(r)-RB 3374 su(r)-RB 175..3374 174..3373 16000 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:14:22
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 9089079..9091886 3043..236 14040 100 Minus
chrX 22417052 chrX 9093430..9093604 175..1 875 100 Minus
chrX 22417052 chrX 9088619..9088789 3371..3201 855 100 Minus
chrX 22417052 chrX 9088864..9089021 3200..3043 790 100 Minus
chrX 22417052 chrX 9091943..9092008 238..173 330 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:48:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:14:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9197268..9200075 3043..236 14040 100 Minus
X 23542271 X 9201618..9201792 175..1 875 100 Minus
X 23542271 X 9196806..9196978 3373..3201 865 100 Minus
X 23542271 X 9197053..9197210 3200..3043 790 100 Minus
X 23542271 X 9200132..9200197 238..173 330 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:57:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 9205366..9208173 3043..236 14040 100 Minus
X 23527363 X 9209716..9209890 175..1 875 100 Minus
X 23527363 X 9204904..9205076 3373..3201 865 100 Minus
X 23527363 X 9205151..9205308 3200..3043 790 100 Minus
X 23527363 X 9208230..9208295 238..173 330 100 Minus
Blast to na_te.dros performed on 2019-03-16 01:14:21 has no hits.

GH13260.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:15:03 Download gff for GH13260.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 9093432..9093604 1..173 100   Minus
chrX 9088864..9089021 3043..3200 100 <- Minus
chrX 9089080..9091884 238..3042 100 <- Minus
chrX 9091944..9092007 174..237 100 <- Minus
chrX 9088619..9088789 3201..3371 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:40:08 Download gff for GH13260.complete
Subject Subject Range Query Range Percent Splice Strand
su(r)-RC 1..3096 193..3288 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:59:57 Download gff for GH13260.complete
Subject Subject Range Query Range Percent Splice Strand
su(r)-RC 1..3096 193..3288 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:04:14 Download gff for GH13260.complete
Subject Subject Range Query Range Percent Splice Strand
su(r)-RC 1..3096 193..3288 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:59:28 Download gff for GH13260.complete
Subject Subject Range Query Range Percent Splice Strand
su(r)-RC 1..3096 193..3288 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:29:18 Download gff for GH13260.complete
Subject Subject Range Query Range Percent Splice Strand
su(r)-RC 1..3096 193..3288 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:25:06 Download gff for GH13260.complete
Subject Subject Range Query Range Percent Splice Strand
su(r)-RC 25..3395 1..3371 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:59:57 Download gff for GH13260.complete
Subject Subject Range Query Range Percent Splice Strand
su(r)-RC 25..3395 1..3371 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:04:14 Download gff for GH13260.complete
Subject Subject Range Query Range Percent Splice Strand
su(r)-RC 25..3395 1..3371 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:59:28 Download gff for GH13260.complete
Subject Subject Range Query Range Percent Splice Strand
su(r)-RC 25..3395 1..3371 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:29:18 Download gff for GH13260.complete
Subject Subject Range Query Range Percent Splice Strand
su(r)-RC 29..3399 1..3371 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:15:03 Download gff for GH13260.complete
Subject Subject Range Query Range Percent Splice Strand
X 9197053..9197210 3043..3200 100 <- Minus
X 9196808..9196978 3201..3371 100 <- Minus
X 9197269..9200073 238..3042 100 <- Minus
X 9200133..9200196 174..237 100 <- Minus
X 9201620..9201792 1..173 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:15:03 Download gff for GH13260.complete
Subject Subject Range Query Range Percent Splice Strand
X 9197053..9197210 3043..3200 100 <- Minus
X 9196808..9196978 3201..3371 100 <- Minus
X 9197269..9200073 238..3042 100 <- Minus
X 9200133..9200196 174..237 100 <- Minus
X 9201620..9201792 1..173 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:15:03 Download gff for GH13260.complete
Subject Subject Range Query Range Percent Splice Strand
X 9197053..9197210 3043..3200 100 <- Minus
X 9196808..9196978 3201..3371 100 <- Minus
X 9197269..9200073 238..3042 100 <- Minus
X 9200133..9200196 174..237 100 <- Minus
X 9201620..9201792 1..173 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:04:14 Download gff for GH13260.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9090841..9091011 3201..3371 100 <- Minus
arm_X 9091086..9091243 3043..3200 100 <- Minus
arm_X 9091302..9094106 238..3042 100 <- Minus
arm_X 9094166..9094229 174..237 100 <- Minus
arm_X 9095653..9095825 1..173 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:35:30 Download gff for GH13260.complete
Subject Subject Range Query Range Percent Splice Strand
X 9204906..9205076 3201..3371 100 <- Minus
X 9205151..9205308 3043..3200 100 <- Minus
X 9205367..9208171 238..3042 100 <- Minus
X 9208231..9208294 174..237 100 <- Minus
X 9209718..9209890 1..173 100   Minus

GH13260.pep Sequence

Translation from 192 to 3287

> GH13260.pep
MSPPQLLSKDSPDIEDLLSLNPRVKTQCSVVPTKQTKENKKHWKRNADHA
APPCTTLANDFSDIKHTTLSERGALEEAARCLKCADAPCQKSCPTQLDIK
SFITSIANKNFYGAAKAIFSDNPLGLTCGMVCPTSDLCVGGCNLQASEAG
PINIGGLQQFATEVFKKMGVRQRRTPQAEANPLSQKIALVGGGPASLSCA
TFLARLGYRDVTIYERRSYLGGLSAAEIPQYRLPIDAVNFEIDLVRDLGV
RIETGRSLGTKDLTIQGLLSTGHDAVFVGIGLPEPKLNPIFAGLQPSNGF
YTSKNFLPLVSDGSKPGLCACKAAAGLPKLHGNVIVLGAGDTAFDCATSA
LRCGARRVFVVFRKGSSGIRAVPEEVELARDERCELLPYLSPRKVIVKDG
LITAMEFCRTEQNENDEWVEDEEQTQRLKANFVISAFGSGLEDQDVKAAL
APLQFRGELPVVDRVTMQSSVKQVFLGGDLAGVANTTVESVNDGKVAAWS
IHCQLQGLPLDTPAALPLFYTDIDAVDISVEMCGIRFENPFGLASAPPTT
STAMIRRAFEQGWGFVVTKTFGLDKDLVTNVSPRIVRGTTSGYKYGPQQG
CFLNIELISEKRAEYWLKSIGELKRDFPEKIVIASIMCSFNEEDWTELAI
KAEQSGADALELNLSCPHGMGERGMGLACGQDPELVEQISRWVRKAVKLP
FFIKLTPNITDIVSIAAAAKRGGADGGSAINTVQGLMGLKADSTAWPAIG
KEQRTTYGGVSGNATRPMALKAISDIANRVPGFPILGIGGIDSGEVALQF
IHAGATVLQICSSVQNQDFTVIEDYCTALKALLYLKANPPPVDGPFWDGQ
SPPTPVHQKGKPVVRLTGEGKATLGFFGPYQRQRDIKMAELRSQKGALWD
AEQVKATPPASNGAPNPAPRIKDVIGAALDKIGSYNKLDNKQQKVALIDD
DMCINCGKCYMTCADSGYQAIEFDKDTHIPHVNDDCTGCTLCVSVCPIID
CITMVPKKIPHVIKRGVEEKIFYTHALSQCQ*

GH13260.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:58:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19101-PA 1034 GF19101-PA 1..1034 1..1031 5058 90.7 Plus
Dana\GF10502-PA 2125 GF10502-PA 1656..2112 60..509 235 24.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18994-PA 1033 GG18994-PA 1..1033 1..1031 5374 97.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:58:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17755-PA 1033 GH17755-PA 1..1033 1..1031 4693 84.1 Plus
Dgri\GH15220-PA 2125 GH15220-PA 1652..2112 60..513 254 25.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:01
Subject Length Description Subject Range Query Range Score Percent Strand
su(r)-PC 1031 CG2194-PC 1..1031 1..1031 5408 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:58:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15089-PA 1035 GI15089-PA 1..1035 1..1031 4852 87.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26798-PA 393 GL26798-PA 1..393 637..1031 1783 83 Plus
Dper\GL26797-PA 223 GL26797-PA 1..127 1..128 473 69.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:58:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15293-PA 1027 GA15293-PA 1..1027 1..1031 4833 86.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:58:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13670-PA 922 GM13670-PA 1..841 1..841 4272 96.4 Plus
Dsec\GM13670-PA 922 GM13670-PA 842..922 951..1031 465 98.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:58:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16077-PA 1031 GD16077-PA 1..1031 1..1031 5476 99.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:58:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18897-PA 1031 GJ18897-PA 1..1031 1..1031 4836 86.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:58:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25544-PA 1033 GK25544-PA 1..1033 1..1031 4817 86.1 Plus
Dwil\GK24771-PA 1045 GK24771-PA 28..1038 7..1016 3129 59.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:58:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17405-PA 1031 GE17405-PA 1..1031 1..1031 5408 98.1 Plus

GH13260.hyp Sequence

Translation from 192 to 3287

> GH13260.hyp
MSPPQLLSKDSPDIEDLLSLNPRVKTQCSVVPTKQTKENKKHWKRNADHA
APPCTTLANDFSDIKHTTLSERGALEEAARCLKCADAPCQKSCPTQLDIK
SFITSIANKNFYGAAKAIFSDNPLGLTCGMVCPTSDLCVGGCNLQASEAG
PINIGGLQQFATEVFKKMGVRQRRTPQAEANPLSQKIALVGGGPASLSCA
TFLARLGYRDVTIYERRSYLGGLSAAEIPQYRLPIDAVNFEIDLVRDLGV
RIETGRSLGTKDLTIQGLLSTGHDAVFVGIGLPEPKLNPIFAGLQPSNGF
YTSKNFLPLVSDGSKPGLCACKAAAGLPKLHGNVIVLGAGDTAFDCATSA
LRCGARRVFVVFRKGSSGIRAVPEEVELARDERCELLPYLSPRKVIVKDG
LITAMEFCRTEQNENDEWVEDEEQTQRLKANFVISAFGSGLEDQDVKAAL
APLQFRGELPVVDRVTMQSSVKQVFLGGDLAGVANTTVESVNDGKVAAWS
IHCQLQGLPLDTPAALPLFYTDIDAVDISVEMCGIRFENPFGLASAPPTT
STAMIRRAFEQGWGFVVTKTFGLDKDLVTNVSPRIVRGTTSGYKYGPQQG
CFLNIELISEKRAEYWLKSIGELKRDFPEKIVIASIMCSFNEEDWTELAI
KAEQSGADALELNLSCPHGMGERGMGLACGQDPELVEQISRWVRKAVKLP
FFIKLTPNITDIVSIAAAAKRGGADGGSAINTVQGLMGLKADSTAWPAIG
KEQRTTYGGVSGNATRPMALKAISDIANRVPGFPILGIGGIDSGEVALQF
IHAGATVLQICSSVQNQDFTVIEDYCTALKALLYLKANPPPVDGPFWDGQ
SPPTPVHQKGKPVVRLTGEGKATLGFFGPYQRQRDIKMAELRSQKGALWD
AEQVKATPPASNGAPNPAPRIKDVIGAALDKIGSYNKLDNKQQKVALIDD
DMCINCGKCYMTCADSGYQAIEFDKDTHIPHVNDDCTGCTLCVSVCPIID
CITMVPKKIPHVIKRGVEEKIFYTHALSQCQ*

GH13260.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
su(r)-PC 1031 CG2194-PC 1..1031 1..1031 5408 100 Plus