BDGP Sequence Production Resources |
Search the DGRC for GH13356
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 133 |
Well: | 56 |
Vector: | pOT2 |
Associated Gene/Transcript | beta4GalNAcTA-RA |
Protein status: | GH13356.pep: gold |
Preliminary Size: | 1839 |
Sequenced Size: | 2269 |
Gene | Date | Evidence |
---|---|---|
CG8536 | 2000-02-14 | Blastp of sequenced clone |
CG8536 | 2001-01-01 | Release 2 assignment |
CG8561 | 2001-01-01 | Release 2 assignment |
CG8585 | 2001-01-01 | Release 2 assignment |
CG8536 | 2003-01-01 | Sim4 clustering to Release 3 |
beta4GalNAcTA | 2008-04-29 | Release 5.5 accounting |
beta4GalNAcTA | 2008-08-15 | Release 5.9 accounting |
RpL10Ab | 2008-08-15 | Release 5.9 accounting |
beta4GalNAcTA | 2008-12-18 | 5.12 accounting |
RpL10Ab | 2008-12-18 | 5.12 accounting |
2269 bp (2269 high quality bases) assembled on 2000-02-14
GenBank Submission: AF132158
> GH13356.complete AACTTGCCGGCCTTGTTCAAGCCAGGGCCAAGCAAACGAGGAATCTGCTT GATCAGCGACTCAGAGGCCAGGAAGGCATCATAGGACTTGGCCAGCTTCT TCACCAGCTTCTTGTTCTTGTTCAGCTTCTTCAGAGCCTCGGCATCCATG AAGTCGACGTTGTTGGCCTTGGCTTCGTCGCAATGCTGCTGATCGCCAAG GATGCACACCTTCATCTTGGGACGAGGAATGTGCTTCAACTTGACGGTGC CGGAGAAACGCTTGTCCTTCTGGGGATCGTAGTTCTTCAGGCCGATCTGC AGTTCCACCGTCTCGAGGAAGCCGCGCTTCTTCTTCGCCGAAGCCTCCAG GAGTCCATTGACGCCCTCATACAGCGTATCACGCGAAACCTTCGACGCCA TCTTTTCCTCGTGCCGGCGAATTTTAACGTTTTTGTTCGGTTGTCGAACG TTTTGCGCTTGAAAATGCCAGTTCGCAGCGCCTGGGCGTCGAGCAAGGTA TGATGCAATCCTCGGACCATGTACCTCTTCACCAAGGCGAATCTCATACG CTTCCTAGCCGGCGCGATATGCTTGTTGCTGGTGCTTAACTTTGTGGGCT TCCGTTCCGACGGAGGTAGCGCCACCTCCCTCAGCAAGCTCAGCATTCGG CGCGTGCACAAGTATGCTCATATCTACGGGAACGCTAGCAGCGATGGAGC CGGAGGCAGTGAAGCATCCAGGCTGCCCGCTTCCCCGCTCGCCTTATCAA AAGACAGAGAGCGGGACCAGGAGCTCAATGGCGGACCCAACTCTACCATA AGAACTGTGATTGCCACGGCAAACTTTACTTCCATTCCACAAGACTTAAC GCGCTTCCTGCTGGGCACAAAGAAATTTTTGCCCCCGCGACAGAAATCCA CATCCGCCCTCCTTGCCAACTGCACTGATCCCGATCCCCGTGATGGTGGA CCCATCACGCCCAACACGACACTGGAGTCACTGGACGTTATTGAGGCGGA GCTTGGACCTCTTTTGCGCCCTGGTGGCGCCTTCGAGCCTGAAAACTGCA ATGCCCAGCATCACGTGGCTATTGTTGTGCCCTTCCGCGATCGATACGCC CATCTATTACTTTTCCTGCGCAACATCCACCCATTTCTGATGAAGCAGCG CATCGCCTATCGCATTTTCATTGTAGAGCAGACCAACGGGAAGCCCTTTA ATCGGGCTGCCATGATGAACATTGGTTATTTGGAGGCCTTAAAGCTGTAC CAGTGGGATTGTTTTATATTCCACGATGTCGATCTTCTGCCTTTGGACGA CCGCAATCTTTACAACTGTCCACGTCAGCCGCGACACATGTCAGTGGCTA TAGACACGCTGAACTTCAGGTTGCCTTATCGATCAATATTTGGAGGTGTT TCCGCAATGACGCGTGAGCACTTTCAGGCCGTAAATGGGTTCTCAAACTC GTTCTTTGGCTGGGGCGGCGAGGATGACGACATGTCCAACAGGTTGAAGC ACGCAAACCTATTCATATCAAGGTATCCGGTCAACATAGCTCGCTACAAG ATGCTGAAGCATCAGAAGGAAAAGGCCAATCCTAAGCGCTATGAAAACTT ACAGAATGGCATGAGCAAAATAGAACAGGATGGAATCAACTCGATAAAGT ATTCTATCTACAGCATCAAACAATTTCCAACTTTCACTTGGTACTTAGCA GAGCTAAAGAACTCCGAGCGCAAAAGTTAGCCTGCATAAAAGACAGCGTT ACAATACGTGACCTTTCCAACTCTCAAATATGCGTATGTACAAAGGACAA CATTACTTTCACAAACGGTAGTCTCTTTTAATAGAATGACAGATCATGGC GGCATGGTTAGAATATTAGGCACATATTGTGTGTATGGTAGTAAGTCCAG TAACTATACTCATATTACGATGTAGTATACTTTTAATCCATCATTTAGCT TCAATTCGTAATCCAAGAACAACAATAAGAACTCGTCTCTGTAGCAATAA TCCTCCCGTTTCACTACTCAAAGTGCTCAATGATACTTATCTAAATAATA TACCTCTGTTGATTTTTGTATTGTTTTATGTTGTTTTTAGTTTTTTGTTG TTTCACTATAGTGTTTTTTAATAACTTCTCAAAAGAAAGCTACACCTATT CCTACAAGGTGAAATGTAGATATTACTTTTGTGATATGCAAATTGTTATT CGATCAGAACGATTTATACCAAAATAAACTTATAAAAACTTTTACTATAC CAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
beta4GalNAcTA-RA | 1927 | beta4GalNAcTA-RA | 92..1927 | 417..2252 | 9180 | 100 | Plus |
RpL10Ab-RA | 949 | RpL10Ab-RA | 179..585 | 407..1 | 2035 | 100 | Minus |
RpL10Ab-RD | 1029 | RpL10Ab-RD | 473..712 | 240..1 | 1200 | 100 | Minus |
RpL10Ab-RD | 1029 | RpL10Ab-RD | 96..264 | 407..239 | 845 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 10147773..10148436 | 1588..2251 | 3275 | 99.5 | Plus |
chr2R | 21145070 | chr2R | 10147001..10147426 | 945..1370 | 2130 | 100 | Plus |
chr2R | 21145070 | chr2R | 10146641..10146946 | 642..947 | 1530 | 100 | Plus |
chr3L | 24539361 | chr3L | 11814511..11814750 | 240..1 | 1200 | 100 | Minus |
chr2R | 21145070 | chr2R | 10146348..10146574 | 417..643 | 1120 | 99.6 | Plus |
chr2R | 21145070 | chr2R | 10147481..10147701 | 1368..1588 | 1090 | 99.5 | Plus |
chr3L | 24539361 | chr3L | 11814053..11814210 | 396..239 | 790 | 100 | Minus |
chr3L | 24539361 | chr3L | 24025421..24025678 | 1945..1695 | 450 | 80.8 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 14260487..14261154 | 1588..2255 | 3340 | 100 | Plus |
2R | 25286936 | 2R | 14259715..14260140 | 945..1370 | 2130 | 100 | Plus |
2R | 25286936 | 2R | 14259355..14259660 | 642..947 | 1530 | 100 | Plus |
3L | 28110227 | 3L | 11823658..11823897 | 240..1 | 1200 | 100 | Minus |
2R | 25286936 | 2R | 14259062..14259288 | 417..643 | 1135 | 100 | Plus |
2R | 25286936 | 2R | 14260195..14260415 | 1368..1588 | 1105 | 100 | Plus |
3L | 28110227 | 3L | 11823200..11823357 | 396..239 | 790 | 100 | Minus |
3L | 28110227 | 3L | 24036514..24036771 | 1945..1695 | 450 | 80.8 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 14261686..14262353 | 1588..2255 | 3340 | 100 | Plus |
2R | 25260384 | 2R | 14260914..14261339 | 945..1370 | 2130 | 100 | Plus |
2R | 25260384 | 2R | 14260554..14260859 | 642..947 | 1530 | 100 | Plus |
3L | 28103327 | 3L | 11816758..11816997 | 240..1 | 1200 | 100 | Minus |
2R | 25260384 | 2R | 14260261..14260487 | 417..643 | 1135 | 100 | Plus |
2R | 25260384 | 2R | 14261394..14261614 | 1368..1588 | 1105 | 100 | Plus |
3L | 28103327 | 3L | 11816300..11816457 | 396..239 | 790 | 100 | Minus |
3L | 28103327 | 3L | 24029793..24029871 | 1773..1695 | 245 | 87.3 | Minus |
3L | 28103327 | 3L | 24029690..24029765 | 1875..1800 | 230 | 86.8 | Minus |
3L | 28103327 | 3L | 24029614..24029678 | 1945..1881 | 220 | 89.2 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 10147483..10147701 | 1370..1588 | 99 | -> | Plus |
chr2R | 10146348..10146574 | 417..643 | 99 | -> | Plus |
chr2R | 10146643..10146944 | 644..945 | 100 | -> | Plus |
chr2R | 10147002..10147425 | 946..1369 | 100 | -> | Plus |
chr2R | 10147774..10148436 | 1589..2251 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
beta4GalNAcTA-RA | 1..1212 | 519..1730 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
beta4GalNAcTA-RA | 1..1212 | 519..1730 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
beta4GalNAcTA-RA | 1..1212 | 519..1730 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
beta4GalNAcTA-RA | 1..1212 | 519..1730 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
beta4GalNAcTA-RA | 1..1212 | 519..1730 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
beta4GalNAcTA-RA | 31..1865 | 417..2251 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
beta4GalNAcTA-RA | 31..1865 | 417..2251 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
beta4GalNAcTA-RA | 33..1867 | 417..2251 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
beta4GalNAcTA-RA | 31..1865 | 417..2251 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
beta4GalNAcTA-RA | 33..1867 | 417..2251 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14259062..14259288 | 417..643 | 100 | -> | Plus |
2R | 14259357..14259658 | 644..945 | 100 | -> | Plus |
2R | 14259716..14260139 | 946..1369 | 100 | -> | Plus |
2R | 14260197..14260415 | 1370..1588 | 100 | -> | Plus |
2R | 14260488..14261150 | 1589..2251 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14259062..14259288 | 417..643 | 100 | -> | Plus |
2R | 14259357..14259658 | 644..945 | 100 | -> | Plus |
2R | 14259716..14260139 | 946..1369 | 100 | -> | Plus |
2R | 14260197..14260415 | 1370..1588 | 100 | -> | Plus |
2R | 14260488..14261150 | 1589..2251 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14259062..14259288 | 417..643 | 100 | -> | Plus |
2R | 14259357..14259658 | 644..945 | 100 | -> | Plus |
2R | 14259716..14260139 | 946..1369 | 100 | -> | Plus |
2R | 14260197..14260415 | 1370..1588 | 100 | -> | Plus |
2R | 14260488..14261150 | 1589..2251 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 10147702..10147920 | 1370..1588 | 100 | -> | Plus |
arm_2R | 10146567..10146793 | 417..643 | 100 | -> | Plus |
arm_2R | 10146862..10147163 | 644..945 | 100 | -> | Plus |
arm_2R | 10147221..10147644 | 946..1369 | 100 | -> | Plus |
arm_2R | 10147993..10148655 | 1589..2251 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14260261..14260487 | 417..643 | 100 | -> | Plus |
2R | 14260556..14260857 | 644..945 | 100 | -> | Plus |
2R | 14260915..14261338 | 946..1369 | 100 | -> | Plus |
2R | 14261396..14261614 | 1370..1588 | 100 | -> | Plus |
2R | 14261687..14262349 | 1589..2251 | 100 | Plus |
Translation from 518 to 1729
> GH13356.pep MYLFTKANLIRFLAGAICLLLVLNFVGFRSDGGSATSLSKLSIRRVHKYA HIYGNASSDGAGGSEASRLPASPLALSKDRERDQELNGGPNSTIRTVIAT ANFTSIPQDLTRFLLGTKKFLPPRQKSTSALLANCTDPDPRDGGPITPNT TLESLDVIEAELGPLLRPGGAFEPENCNAQHHVAIVVPFRDRYAHLLLFL RNIHPFLMKQRIAYRIFIVEQTNGKPFNRAAMMNIGYLEALKLYQWDCFI FHDVDLLPLDDRNLYNCPRQPRHMSVAIDTLNFRLPYRSIFGGVSAMTRE HFQAVNGFSNSFFGWGGEDDDMSNRLKHANLFISRYPVNIARYKMLKHQK EKANPKRYENLQNGMSKIEQDGINSIKYSIYSIKQFPTFTWYLAELKNSE RKS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13490-PA | 391 | GF13490-PA | 1..391 | 1..403 | 1860 | 86.1 | Plus |
Dana\GF18727-PA | 323 | GF18727-PA | 94..322 | 166..395 | 525 | 44.3 | Plus |
Dana\beta4GalT7-PA | 318 | GF16319-PA | 65..280 | 175..386 | 316 | 31.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20439-PA | 403 | GG20439-PA | 1..403 | 1..403 | 2073 | 95 | Plus |
Dere\GG12042-PA | 323 | GG12042-PA | 91..322 | 163..395 | 546 | 45.5 | Plus |
Dere\beta4GalT7-PA | 322 | GG11346-PA | 73..283 | 179..385 | 282 | 33.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21793-PA | 410 | GH21793-PA | 1..410 | 1..403 | 1621 | 78.2 | Plus |
Dgri\GH23682-PA | 322 | GH23682-PA | 90..321 | 163..395 | 543 | 44.6 | Plus |
Dgri\GH22239-PA | 310 | GH22239-PA | 61..272 | 179..386 | 318 | 32.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
beta4GalNAcTA-PA | 403 | CG8536-PA | 1..403 | 1..403 | 2117 | 100 | Plus |
beta4GalNAcTB-PA | 323 | CG14517-PA | 91..322 | 163..395 | 551 | 45.5 | Plus |
beta4GalT7-PA | 322 | CG11780-PA | 50..283 | 153..385 | 329 | 32 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20541-PA | 406 | GI20541-PA | 1..406 | 1..403 | 1694 | 79.6 | Plus |
Dmoj\GI24526-PA | 322 | GI24526-PA | 90..321 | 163..395 | 549 | 45.1 | Plus |
Dmoj\beta4GalT7-PA | 309 | GI22222-PA | 62..268 | 181..383 | 315 | 33.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10126-PA | 196 | GL10126-PA | 1..196 | 208..403 | 1040 | 95.9 | Plus |
Dper\GL23283-PA | 322 | GL23283-PA | 95..321 | 168..395 | 503 | 43.9 | Plus |
Dper\GL10125-PA | 153 | GL10125-PA | 1..139 | 1..143 | 420 | 66 | Plus |
Dper\GL24409-PA | 569 | GL24409-PA | 319..529 | 178..384 | 330 | 33.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21145-PA | 399 | GA21145-PA | 1..399 | 1..403 | 1808 | 84.4 | Plus |
Dpse\GA13048-PA | 322 | GA13048-PA | 95..321 | 168..395 | 504 | 43.9 | Plus |
Dpse\GA11195-PA | 321 | GA11195-PA | 49..281 | 163..384 | 329 | 31.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21525-PA | 403 | GM21525-PA | 1..403 | 1..403 | 2132 | 98.3 | Plus |
Dsec\GM12269-PA | 323 | GM12269-PA | 91..322 | 163..395 | 552 | 45.1 | Plus |
Dsec\beta4GalT7-PA | 195 | GM17784-PA | 72..193 | 179..302 | 215 | 37.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11035-PA | 414 | GD11035-PA | 1..414 | 1..403 | 2112 | 95.7 | Plus |
Dsim\GD18000-PA | 323 | GD18000-PA | 91..322 | 163..395 | 547 | 45.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22392-PA | 406 | GJ22392-PA | 1..406 | 1..403 | 1643 | 79.2 | Plus |
Dvir\GJ22594-PA | 322 | GJ22594-PA | 90..321 | 163..395 | 541 | 43.8 | Plus |
Dvir\GJ24343-PA | 308 | GJ24343-PA | 59..267 | 179..383 | 310 | 32.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20782-PA | 384 | GK20782-PA | 1..384 | 1..403 | 1626 | 77.6 | Plus |
Dwil\GK22603-PA | 316 | GK22603-PA | 84..315 | 163..395 | 523 | 43.3 | Plus |
Dwil\GK14189-PA | 319 | GK14189-PA | 70..281 | 179..386 | 321 | 33 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE13570-PA | 403 | GE13570-PA | 1..403 | 1..403 | 2079 | 95.5 | Plus |
Dyak\GE10481-PA | 323 | GE10481-PA | 91..322 | 163..395 | 546 | 45.1 | Plus |
Dyak\beta4GalT7-PA | 322 | GE23542-PA | 50..284 | 153..386 | 323 | 31.8 | Plus |
Translation from 518 to 1729
> GH13356.hyp MYLFTKANLIRFLAGAICLLLVLNFVGFRSDGGSATSLSKLSIRRVHKYA HIYGNASSDGAGGSEASRLPASPLALSKDRERDQELNGGPNSTIRTVIAT ANFTSIPQDLTRFLLGTKKFLPPRQKSTSALLANCTDPDPRDGGPITPNT TLESLDVIEAELGPLLRPGGAFEPENCNAQHHVAIVVPFRDRYAHLLLFL RNIHPFLMKQRIAYRIFIVEQTNGKPFNRAAMMNIGYLEALKLYQWDCFI FHDVDLLPLDDRNLYNCPRQPRHMSVAIDTLNFRLPYRSIFGGVSAMTRE HFQAVNGFSNSFFGWGGEDDDMSNRLKHANLFISRYPVNIARYKMLKHQK EKANPKRYENLQNGMSKIEQDGINSIKYSIYSIKQFPTFTWYLAELKNSE RKS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
beta4GalNAcTA-PA | 403 | CG8536-PA | 1..403 | 1..403 | 2117 | 100 | Plus |
beta4GalNAcTB-PA | 323 | CG14517-PA | 91..322 | 163..395 | 551 | 45.5 | Plus |
beta4GalT7-PA | 322 | CG11780-PA | 50..283 | 153..385 | 329 | 32 | Plus |