Clone GH13356 Report

Search the DGRC for GH13356

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:133
Well:56
Vector:pOT2
Associated Gene/Transcriptbeta4GalNAcTA-RA
Protein status:GH13356.pep: gold
Preliminary Size:1839
Sequenced Size:2269

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8536 2000-02-14 Blastp of sequenced clone
CG8536 2001-01-01 Release 2 assignment
CG8561 2001-01-01 Release 2 assignment
CG8585 2001-01-01 Release 2 assignment
CG8536 2003-01-01 Sim4 clustering to Release 3
beta4GalNAcTA 2008-04-29 Release 5.5 accounting
beta4GalNAcTA 2008-08-15 Release 5.9 accounting
RpL10Ab 2008-08-15 Release 5.9 accounting
beta4GalNAcTA 2008-12-18 5.12 accounting
RpL10Ab 2008-12-18 5.12 accounting

Clone Sequence Records

GH13356.complete Sequence

2269 bp (2269 high quality bases) assembled on 2000-02-14

GenBank Submission: AF132158

> GH13356.complete
AACTTGCCGGCCTTGTTCAAGCCAGGGCCAAGCAAACGAGGAATCTGCTT
GATCAGCGACTCAGAGGCCAGGAAGGCATCATAGGACTTGGCCAGCTTCT
TCACCAGCTTCTTGTTCTTGTTCAGCTTCTTCAGAGCCTCGGCATCCATG
AAGTCGACGTTGTTGGCCTTGGCTTCGTCGCAATGCTGCTGATCGCCAAG
GATGCACACCTTCATCTTGGGACGAGGAATGTGCTTCAACTTGACGGTGC
CGGAGAAACGCTTGTCCTTCTGGGGATCGTAGTTCTTCAGGCCGATCTGC
AGTTCCACCGTCTCGAGGAAGCCGCGCTTCTTCTTCGCCGAAGCCTCCAG
GAGTCCATTGACGCCCTCATACAGCGTATCACGCGAAACCTTCGACGCCA
TCTTTTCCTCGTGCCGGCGAATTTTAACGTTTTTGTTCGGTTGTCGAACG
TTTTGCGCTTGAAAATGCCAGTTCGCAGCGCCTGGGCGTCGAGCAAGGTA
TGATGCAATCCTCGGACCATGTACCTCTTCACCAAGGCGAATCTCATACG
CTTCCTAGCCGGCGCGATATGCTTGTTGCTGGTGCTTAACTTTGTGGGCT
TCCGTTCCGACGGAGGTAGCGCCACCTCCCTCAGCAAGCTCAGCATTCGG
CGCGTGCACAAGTATGCTCATATCTACGGGAACGCTAGCAGCGATGGAGC
CGGAGGCAGTGAAGCATCCAGGCTGCCCGCTTCCCCGCTCGCCTTATCAA
AAGACAGAGAGCGGGACCAGGAGCTCAATGGCGGACCCAACTCTACCATA
AGAACTGTGATTGCCACGGCAAACTTTACTTCCATTCCACAAGACTTAAC
GCGCTTCCTGCTGGGCACAAAGAAATTTTTGCCCCCGCGACAGAAATCCA
CATCCGCCCTCCTTGCCAACTGCACTGATCCCGATCCCCGTGATGGTGGA
CCCATCACGCCCAACACGACACTGGAGTCACTGGACGTTATTGAGGCGGA
GCTTGGACCTCTTTTGCGCCCTGGTGGCGCCTTCGAGCCTGAAAACTGCA
ATGCCCAGCATCACGTGGCTATTGTTGTGCCCTTCCGCGATCGATACGCC
CATCTATTACTTTTCCTGCGCAACATCCACCCATTTCTGATGAAGCAGCG
CATCGCCTATCGCATTTTCATTGTAGAGCAGACCAACGGGAAGCCCTTTA
ATCGGGCTGCCATGATGAACATTGGTTATTTGGAGGCCTTAAAGCTGTAC
CAGTGGGATTGTTTTATATTCCACGATGTCGATCTTCTGCCTTTGGACGA
CCGCAATCTTTACAACTGTCCACGTCAGCCGCGACACATGTCAGTGGCTA
TAGACACGCTGAACTTCAGGTTGCCTTATCGATCAATATTTGGAGGTGTT
TCCGCAATGACGCGTGAGCACTTTCAGGCCGTAAATGGGTTCTCAAACTC
GTTCTTTGGCTGGGGCGGCGAGGATGACGACATGTCCAACAGGTTGAAGC
ACGCAAACCTATTCATATCAAGGTATCCGGTCAACATAGCTCGCTACAAG
ATGCTGAAGCATCAGAAGGAAAAGGCCAATCCTAAGCGCTATGAAAACTT
ACAGAATGGCATGAGCAAAATAGAACAGGATGGAATCAACTCGATAAAGT
ATTCTATCTACAGCATCAAACAATTTCCAACTTTCACTTGGTACTTAGCA
GAGCTAAAGAACTCCGAGCGCAAAAGTTAGCCTGCATAAAAGACAGCGTT
ACAATACGTGACCTTTCCAACTCTCAAATATGCGTATGTACAAAGGACAA
CATTACTTTCACAAACGGTAGTCTCTTTTAATAGAATGACAGATCATGGC
GGCATGGTTAGAATATTAGGCACATATTGTGTGTATGGTAGTAAGTCCAG
TAACTATACTCATATTACGATGTAGTATACTTTTAATCCATCATTTAGCT
TCAATTCGTAATCCAAGAACAACAATAAGAACTCGTCTCTGTAGCAATAA
TCCTCCCGTTTCACTACTCAAAGTGCTCAATGATACTTATCTAAATAATA
TACCTCTGTTGATTTTTGTATTGTTTTATGTTGTTTTTAGTTTTTTGTTG
TTTCACTATAGTGTTTTTTAATAACTTCTCAAAAGAAAGCTACACCTATT
CCTACAAGGTGAAATGTAGATATTACTTTTGTGATATGCAAATTGTTATT
CGATCAGAACGATTTATACCAAAATAAACTTATAAAAACTTTTACTATAC
CAAAAAAAAAAAAAAAAAA

GH13356.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:39:36
Subject Length Description Subject Range Query Range Score Percent Strand
beta4GalNAcTA-RA 1927 beta4GalNAcTA-RA 92..1927 417..2252 9180 100 Plus
RpL10Ab-RA 949 RpL10Ab-RA 179..585 407..1 2035 100 Minus
RpL10Ab-RD 1029 RpL10Ab-RD 473..712 240..1 1200 100 Minus
RpL10Ab-RD 1029 RpL10Ab-RD 96..264 407..239 845 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:24:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 10147773..10148436 1588..2251 3275 99.5 Plus
chr2R 21145070 chr2R 10147001..10147426 945..1370 2130 100 Plus
chr2R 21145070 chr2R 10146641..10146946 642..947 1530 100 Plus
chr3L 24539361 chr3L 11814511..11814750 240..1 1200 100 Minus
chr2R 21145070 chr2R 10146348..10146574 417..643 1120 99.6 Plus
chr2R 21145070 chr2R 10147481..10147701 1368..1588 1090 99.5 Plus
chr3L 24539361 chr3L 11814053..11814210 396..239 790 100 Minus
chr3L 24539361 chr3L 24025421..24025678 1945..1695 450 80.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:49:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:24:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14260487..14261154 1588..2255 3340 100 Plus
2R 25286936 2R 14259715..14260140 945..1370 2130 100 Plus
2R 25286936 2R 14259355..14259660 642..947 1530 100 Plus
3L 28110227 3L 11823658..11823897 240..1 1200 100 Minus
2R 25286936 2R 14259062..14259288 417..643 1135 100 Plus
2R 25286936 2R 14260195..14260415 1368..1588 1105 100 Plus
3L 28110227 3L 11823200..11823357 396..239 790 100 Minus
3L 28110227 3L 24036514..24036771 1945..1695 450 80.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:00:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 14261686..14262353 1588..2255 3340 100 Plus
2R 25260384 2R 14260914..14261339 945..1370 2130 100 Plus
2R 25260384 2R 14260554..14260859 642..947 1530 100 Plus
3L 28103327 3L 11816758..11816997 240..1 1200 100 Minus
2R 25260384 2R 14260261..14260487 417..643 1135 100 Plus
2R 25260384 2R 14261394..14261614 1368..1588 1105 100 Plus
3L 28103327 3L 11816300..11816457 396..239 790 100 Minus
3L 28103327 3L 24029793..24029871 1773..1695 245 87.3 Minus
3L 28103327 3L 24029690..24029765 1875..1800 230 86.8 Minus
3L 28103327 3L 24029614..24029678 1945..1881 220 89.2 Minus
Blast to na_te.dros performed on 2019-03-16 19:24:33 has no hits.

GH13356.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:25:47 Download gff for GH13356.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 10147483..10147701 1370..1588 99 -> Plus
chr2R 10146348..10146574 417..643 99 -> Plus
chr2R 10146643..10146944 644..945 100 -> Plus
chr2R 10147002..10147425 946..1369 100 -> Plus
chr2R 10147774..10148436 1589..2251 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:40:15 Download gff for GH13356.complete
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTA-RA 1..1212 519..1730 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:31:34 Download gff for GH13356.complete
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTA-RA 1..1212 519..1730 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:38:58 Download gff for GH13356.complete
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTA-RA 1..1212 519..1730 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:05:17 Download gff for GH13356.complete
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTA-RA 1..1212 519..1730 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:30:20 Download gff for GH13356.complete
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTA-RA 1..1212 519..1730 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:32:52 Download gff for GH13356.complete
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTA-RA 31..1865 417..2251 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:31:34 Download gff for GH13356.complete
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTA-RA 31..1865 417..2251 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:58 Download gff for GH13356.complete
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTA-RA 33..1867 417..2251 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:05:17 Download gff for GH13356.complete
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTA-RA 31..1865 417..2251 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:30:20 Download gff for GH13356.complete
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTA-RA 33..1867 417..2251 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:25:47 Download gff for GH13356.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14259062..14259288 417..643 100 -> Plus
2R 14259357..14259658 644..945 100 -> Plus
2R 14259716..14260139 946..1369 100 -> Plus
2R 14260197..14260415 1370..1588 100 -> Plus
2R 14260488..14261150 1589..2251 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:25:47 Download gff for GH13356.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14259062..14259288 417..643 100 -> Plus
2R 14259357..14259658 644..945 100 -> Plus
2R 14259716..14260139 946..1369 100 -> Plus
2R 14260197..14260415 1370..1588 100 -> Plus
2R 14260488..14261150 1589..2251 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:25:47 Download gff for GH13356.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14259062..14259288 417..643 100 -> Plus
2R 14259357..14259658 644..945 100 -> Plus
2R 14259716..14260139 946..1369 100 -> Plus
2R 14260197..14260415 1370..1588 100 -> Plus
2R 14260488..14261150 1589..2251 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:58 Download gff for GH13356.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10147702..10147920 1370..1588 100 -> Plus
arm_2R 10146567..10146793 417..643 100 -> Plus
arm_2R 10146862..10147163 644..945 100 -> Plus
arm_2R 10147221..10147644 946..1369 100 -> Plus
arm_2R 10147993..10148655 1589..2251 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:43:24 Download gff for GH13356.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14260261..14260487 417..643 100 -> Plus
2R 14260556..14260857 644..945 100 -> Plus
2R 14260915..14261338 946..1369 100 -> Plus
2R 14261396..14261614 1370..1588 100 -> Plus
2R 14261687..14262349 1589..2251 100   Plus

GH13356.pep Sequence

Translation from 518 to 1729

> GH13356.pep
MYLFTKANLIRFLAGAICLLLVLNFVGFRSDGGSATSLSKLSIRRVHKYA
HIYGNASSDGAGGSEASRLPASPLALSKDRERDQELNGGPNSTIRTVIAT
ANFTSIPQDLTRFLLGTKKFLPPRQKSTSALLANCTDPDPRDGGPITPNT
TLESLDVIEAELGPLLRPGGAFEPENCNAQHHVAIVVPFRDRYAHLLLFL
RNIHPFLMKQRIAYRIFIVEQTNGKPFNRAAMMNIGYLEALKLYQWDCFI
FHDVDLLPLDDRNLYNCPRQPRHMSVAIDTLNFRLPYRSIFGGVSAMTRE
HFQAVNGFSNSFFGWGGEDDDMSNRLKHANLFISRYPVNIARYKMLKHQK
EKANPKRYENLQNGMSKIEQDGINSIKYSIYSIKQFPTFTWYLAELKNSE
RKS*

GH13356.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:06:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13490-PA 391 GF13490-PA 1..391 1..403 1860 86.1 Plus
Dana\GF18727-PA 323 GF18727-PA 94..322 166..395 525 44.3 Plus
Dana\beta4GalT7-PA 318 GF16319-PA 65..280 175..386 316 31.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:06:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20439-PA 403 GG20439-PA 1..403 1..403 2073 95 Plus
Dere\GG12042-PA 323 GG12042-PA 91..322 163..395 546 45.5 Plus
Dere\beta4GalT7-PA 322 GG11346-PA 73..283 179..385 282 33.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:06:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21793-PA 410 GH21793-PA 1..410 1..403 1621 78.2 Plus
Dgri\GH23682-PA 322 GH23682-PA 90..321 163..395 543 44.6 Plus
Dgri\GH22239-PA 310 GH22239-PA 61..272 179..386 318 32.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:41:57
Subject Length Description Subject Range Query Range Score Percent Strand
beta4GalNAcTA-PA 403 CG8536-PA 1..403 1..403 2117 100 Plus
beta4GalNAcTB-PA 323 CG14517-PA 91..322 163..395 551 45.5 Plus
beta4GalT7-PA 322 CG11780-PA 50..283 153..385 329 32 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:06:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20541-PA 406 GI20541-PA 1..406 1..403 1694 79.6 Plus
Dmoj\GI24526-PA 322 GI24526-PA 90..321 163..395 549 45.1 Plus
Dmoj\beta4GalT7-PA 309 GI22222-PA 62..268 181..383 315 33.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:06:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10126-PA 196 GL10126-PA 1..196 208..403 1040 95.9 Plus
Dper\GL23283-PA 322 GL23283-PA 95..321 168..395 503 43.9 Plus
Dper\GL10125-PA 153 GL10125-PA 1..139 1..143 420 66 Plus
Dper\GL24409-PA 569 GL24409-PA 319..529 178..384 330 33.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:06:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21145-PA 399 GA21145-PA 1..399 1..403 1808 84.4 Plus
Dpse\GA13048-PA 322 GA13048-PA 95..321 168..395 504 43.9 Plus
Dpse\GA11195-PA 321 GA11195-PA 49..281 163..384 329 31.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:06:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21525-PA 403 GM21525-PA 1..403 1..403 2132 98.3 Plus
Dsec\GM12269-PA 323 GM12269-PA 91..322 163..395 552 45.1 Plus
Dsec\beta4GalT7-PA 195 GM17784-PA 72..193 179..302 215 37.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:06:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11035-PA 414 GD11035-PA 1..414 1..403 2112 95.7 Plus
Dsim\GD18000-PA 323 GD18000-PA 91..322 163..395 547 45.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:06:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22392-PA 406 GJ22392-PA 1..406 1..403 1643 79.2 Plus
Dvir\GJ22594-PA 322 GJ22594-PA 90..321 163..395 541 43.8 Plus
Dvir\GJ24343-PA 308 GJ24343-PA 59..267 179..383 310 32.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:06:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20782-PA 384 GK20782-PA 1..384 1..403 1626 77.6 Plus
Dwil\GK22603-PA 316 GK22603-PA 84..315 163..395 523 43.3 Plus
Dwil\GK14189-PA 319 GK14189-PA 70..281 179..386 321 33 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:06:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13570-PA 403 GE13570-PA 1..403 1..403 2079 95.5 Plus
Dyak\GE10481-PA 323 GE10481-PA 91..322 163..395 546 45.1 Plus
Dyak\beta4GalT7-PA 322 GE23542-PA 50..284 153..386 323 31.8 Plus

GH13356.hyp Sequence

Translation from 518 to 1729

> GH13356.hyp
MYLFTKANLIRFLAGAICLLLVLNFVGFRSDGGSATSLSKLSIRRVHKYA
HIYGNASSDGAGGSEASRLPASPLALSKDRERDQELNGGPNSTIRTVIAT
ANFTSIPQDLTRFLLGTKKFLPPRQKSTSALLANCTDPDPRDGGPITPNT
TLESLDVIEAELGPLLRPGGAFEPENCNAQHHVAIVVPFRDRYAHLLLFL
RNIHPFLMKQRIAYRIFIVEQTNGKPFNRAAMMNIGYLEALKLYQWDCFI
FHDVDLLPLDDRNLYNCPRQPRHMSVAIDTLNFRLPYRSIFGGVSAMTRE
HFQAVNGFSNSFFGWGGEDDDMSNRLKHANLFISRYPVNIARYKMLKHQK
EKANPKRYENLQNGMSKIEQDGINSIKYSIYSIKQFPTFTWYLAELKNSE
RKS*

GH13356.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:41:34
Subject Length Description Subject Range Query Range Score Percent Strand
beta4GalNAcTA-PA 403 CG8536-PA 1..403 1..403 2117 100 Plus
beta4GalNAcTB-PA 323 CG14517-PA 91..322 163..395 551 45.5 Plus
beta4GalT7-PA 322 CG11780-PA 50..283 153..385 329 32 Plus