Clone GH13458 Report

Search the DGRC for GH13458

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:134
Well:58
Vector:pOT2
Associated Gene/TranscriptEla-RA
Protein status:GH13458.pep: gold
Preliminary Size:1218
Sequenced Size:1215

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7021 2001-01-01 Release 2 assignment
CG7021 2002-01-03 Blastp of sequenced clone
CG7021 2003-01-01 Sim4 clustering to Release 3
Ela 2008-04-29 Release 5.5 accounting
Ela 2008-08-15 Release 5.9 accounting
Ela 2008-12-18 5.12 accounting

Clone Sequence Records

GH13458.complete Sequence

1215 bp (1215 high quality bases) assembled on 2002-01-03

GenBank Submission: AY075334

> GH13458.complete
AAGACGCCATGTTAAGCAGGAGGGTCATCGCATTCGCCGCTCTGGCCCTC
ATCCAGATAGCCAGCGGTCAGGCCTCGCAATTCAGCAGGGACGAAAGTCA
GGAGGATCAGAAGACGGAGTTTAACCTGGCCTCCACTCTGACGGGAGGCA
TTACCAGCAGTCGCCATCGCCAGCGGGCCAATCTCAATTCGCAACTTTAT
CCTGGCCTTGGTCAGCTGGGATCGGGTTATGCGGGCGCAACTGGATCCAT
CGACGATGCCCATGGCCATGAGCAGGGTGGCTCTGGCGTACGAGTGGCCA
GTACGAACTCCGTTGTTTTTCCTGGCAACCAGTCACCAAATCCGGCACTC
ACAATTACAGGAGGTCACCAGATTCCCGCTTATCCGCCTCCGGGTTTTCC
TGGACAACAGGCTCCAGTTCCGTACCCAGCTGCAGGAGGCTCTTCAGGAG
GATCCTCATCATCCGGTGGTTACCAAAGTGCAGGTGCTGTTTCTCCTCCT
GGCTATCCTGTTGCTGGAGCAGTTCCTGCTCAGTATCCGGTGGGAGTTCC
TCCCCAGCAGCCAGTGGGTGCAGGAGCACCTGGTTACTTCCCGGGAACTG
GTGCCTATCCTGGCTATCCCTACCCCGGAGTATACTTGCCACAGTACCCA
GCGTACCCTCAACCAGCCCAGTTCCCCGCCTATGGAGTGCTACCCGGAGC
TGTGGCTCAACCAGGAGTTCCTGGAGTAGCTGGAGTTCCGGGAGCACCTG
GAGTGGCAGGAGTGCCCGGAGCAGCTGGTCAGGCTCCTGCCACCAGCGGC
ATGAACTATCATCGCTATCCGGCTCACAATCCCGCTGATCCGAGCCATTG
GGACCATCATTTCTCGATGAACACCGAGTACAAGGAGGATGGCGTCCACA
AGGGACCATTTGGAGTGCTGAACAATCACAATGCCTTTGGCTATGGCAGT
GGATATGGGGGCGGATACAACGGTGCCTTCAACTCGCCGGCCTACTGAAG
CTGGCCGACATCATGGGTGGACCTCGGTGGTGGTGGTAGTGGTAATGGTG
TTGGTGGGGCGTGAAGTAATCCGAGTCGTAGTCATAACTTCGCTGCTGCC
TCCTTGGCCAGAGGCAGCTGTCTTTGCCTATCATCCTGTGTGTCCCTGCG
AAATAAACTTGATTTCTGCACACCCAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAA

GH13458.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
Ela-RA 1550 Ela-RA 119..1295 1..1177 5885 100 Plus
Ela.c 2241 Ela.c 119..1295 1..1177 5885 100 Plus
Ela.a 1550 Ela.a 119..1295 1..1177 5885 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:41:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 20689196..20689889 482..1175 3470 100 Plus
chr3R 27901430 chr3R 20688548..20689032 1..485 2425 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:49:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24866010..24866705 482..1177 3480 100 Plus
3R 32079331 3R 24865362..24865846 1..485 2425 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:02:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 24606841..24607536 482..1177 3480 100 Plus
3R 31820162 3R 24606193..24606677 1..485 2425 100 Plus
Blast to na_te.dros performed on 2019-03-16 00:41:13 has no hits.

GH13458.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:42:15 Download gff for GH13458.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 20688548..20689030 1..483 100 -> Plus
chr3R 20689198..20689889 484..1175 95   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:40:27 Download gff for GH13458.complete
Subject Subject Range Query Range Percent Splice Strand
Ela-RA 1..990 9..998 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:56:44 Download gff for GH13458.complete
Subject Subject Range Query Range Percent Splice Strand
Ela-RA 1..990 9..998 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:51:42 Download gff for GH13458.complete
Subject Subject Range Query Range Percent Splice Strand
Ela-RA 1..990 9..998 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:21:33 Download gff for GH13458.complete
Subject Subject Range Query Range Percent Splice Strand
Ela-RA 1..990 9..998 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:09:22 Download gff for GH13458.complete
Subject Subject Range Query Range Percent Splice Strand
Ela-RA 1..990 9..998 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:21:04 Download gff for GH13458.complete
Subject Subject Range Query Range Percent Splice Strand
Ela-RA 12..1186 1..1175 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:56:44 Download gff for GH13458.complete
Subject Subject Range Query Range Percent Splice Strand
Ela-RA 12..1186 1..1175 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:51:42 Download gff for GH13458.complete
Subject Subject Range Query Range Percent Splice Strand
Ela-RA 13..1187 1..1175 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:21:33 Download gff for GH13458.complete
Subject Subject Range Query Range Percent Splice Strand
Ela-RA 12..1186 1..1175 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:09:22 Download gff for GH13458.complete
Subject Subject Range Query Range Percent Splice Strand
Ela-RA 13..1187 1..1175 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:42:15 Download gff for GH13458.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24865362..24865844 1..483 100 -> Plus
3R 24866012..24866703 484..1175 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:42:15 Download gff for GH13458.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24865362..24865844 1..483 100 -> Plus
3R 24866012..24866703 484..1175 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:42:15 Download gff for GH13458.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24865362..24865844 1..483 100 -> Plus
3R 24866012..24866703 484..1175 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:51:42 Download gff for GH13458.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20691084..20691566 1..483 100 -> Plus
arm_3R 20691734..20692425 484..1175 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:56:20 Download gff for GH13458.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24606193..24606675 1..483 100 -> Plus
3R 24606843..24607534 484..1175 100   Plus

GH13458.hyp Sequence

Translation from 2 to 997

> GH13458.hyp
DAMLSRRVIAFAALALIQIASGQASQFSRDESQEDQKTEFNLASTLTGGI
TSSRHRQRANLNSQLYPGLGQLGSGYAGATGSIDDAHGHEQGGSGVRVAS
TNSVVFPGNQSPNPALTITGGHQIPAYPPPGFPGQQAPVPYPAAGGSSGG
SSSSGGYQSAGAVSPPGYPVAGAVPAQYPVGVPPQQPVGAGAPGYFPGTG
AYPGYPYPGVYLPQYPAYPQPAQFPAYGVLPGAVAQPGVPGVAGVPGAPG
VAGVPGAAGQAPATSGMNYHRYPAHNPADPSHWDHHFSMNTEYKEDGVHK
GPFGVLNNHNAFGYGSGYGGGYNGAFNSPAY*

GH13458.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:42:35
Subject Length Description Subject Range Query Range Score Percent Strand
Ela-PC 329 CG7021-PC 1..329 3..331 1788 100 Plus
Ela-PA 329 CG7021-PA 1..329 3..331 1788 100 Plus
Ela-PB 309 CG7021-PB 1..309 3..331 1647 93.6 Plus
Cpr47Ef-PD 601 CG13214-PD 336..548 67..272 160 33.5 Plus
Sec24CD-PA 1193 CG10882-PA 150..360 81..280 158 31.4 Plus

GH13458.pep Sequence

Translation from 8 to 997

> GH13458.pep
MLSRRVIAFAALALIQIASGQASQFSRDESQEDQKTEFNLASTLTGGITS
SRHRQRANLNSQLYPGLGQLGSGYAGATGSIDDAHGHEQGGSGVRVASTN
SVVFPGNQSPNPALTITGGHQIPAYPPPGFPGQQAPVPYPAAGGSSGGSS
SSGGYQSAGAVSPPGYPVAGAVPAQYPVGVPPQQPVGAGAPGYFPGTGAY
PGYPYPGVYLPQYPAYPQPAQFPAYGVLPGAVAQPGVPGVAGVPGAPGVA
GVPGAAGQAPATSGMNYHRYPAHNPADPSHWDHHFSMNTEYKEDGVHKGP
FGVLNNHNAFGYGSGYGGGYNGAFNSPAY*

GH13458.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16999-PA 290 GF16999-PA 1..287 1..326 657 55.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:59:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11330-PA 349 GG11330-PA 18..330 1..310 1157 76.9 Plus
Dere\GG11329-PA 167 GG11329-PA 18..81 1..77 262 75.3 Plus
Dere\GG11329-PA 167 GG11329-PA 81..156 188..271 249 69 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:59:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17061-PA 316 GH17061-PA 7..316 5..329 435 40.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
Elal-PC 329 CG7021-PC 1..329 1..329 1788 100 Plus
Elal-PA 329 CG7021-PA 1..329 1..329 1788 100 Plus
Elal-PB 309 CG7021-PB 1..309 1..329 1647 93.6 Plus
Cpr47Ef-PD 601 CG13214-PD 336..548 65..270 160 33.5 Plus
Sec24CD-PA 1193 CG10882-PA 150..360 79..278 158 31.4 Plus
Sec24CD-PA 1193 CG10882-PA 273..445 121..301 158 32.8 Plus
Sec24CD-PB 1193 CG10882-PB 150..360 79..278 158 31.4 Plus
Sec24CD-PB 1193 CG10882-PB 273..445 121..301 158 32.8 Plus
Sec24CD-PC 1231 CG10882-PC 150..360 79..278 158 31.4 Plus
Sec24CD-PC 1231 CG10882-PC 273..445 121..301 158 32.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:59:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10571-PA 266 GI10571-PA 21..266 22..329 305 39.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13939-PA 298 GL13939-PA 1..298 1..329 496 50.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20038-PD 328 GA20038-PD 1..328 1..329 506 51.6 Plus
Dpse\GA20038-PC 307 GA20038-PC 1..307 1..329 489 50 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26638-PA 244 GM26638-PA 11..244 104..329 767 77.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21140-PA 262 GD21140-PA 48..262 120..329 808 88.6 Plus
Dsim\GD15184-PA 159 GD15184-PA 18..159 1..142 661 90.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22927-PA 68 GJ22927-PA 20..63 21..64 178 72.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22428-PA 277 GK22428-PA 8..275 12..327 461 44.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23525-PA 333 GE23525-PA 18..333 1..329 1133 79.5 Plus